Wall clock time and date at job start Mon Mar 30 2020 03:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47014 * 2 1 4 4 N 1.46493 * 109.47368 * 120.00072 * 2 1 3 5 5 N 1.40125 * 126.49585 * 300.02616 * 4 2 1 6 6 N 1.28668 * 108.93699 * 179.97438 * 5 4 2 7 7 C 1.34844 * 109.63629 * 359.97438 * 6 5 4 8 8 C 1.41492 * 126.02044 * 179.97438 * 7 6 5 9 9 H 1.08003 * 119.99478 * 173.50461 * 8 7 6 10 10 C 1.39730 * 120.00117 * 353.50672 * 8 7 6 11 11 N 1.30984 * 120.00012 * 359.97438 * 10 8 7 12 12 Si 1.86808 * 120.00046 * 179.97438 * 10 8 7 13 13 H 1.48492 * 109.46968 * 59.99765 * 12 10 8 14 14 H 1.48498 * 109.46864 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.46844 * 299.99881 * 12 10 8 16 16 C 1.35024 * 126.49194 * 119.71047 * 4 2 1 17 17 C 1.50698 * 126.77105 * 0.02562 * 16 4 2 18 18 C 1.52997 * 117.50016 * 132.41795 * 17 16 4 19 19 C 1.53003 * 117.49895 * 63.79081 * 17 16 4 20 20 H 1.08999 * 109.47543 * 59.99550 * 1 2 3 21 21 H 1.08999 * 109.46810 * 299.99469 * 1 2 3 22 22 H 1.09003 * 109.46957 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.46810 * 240.00531 * 2 1 3 24 24 H 1.08999 * 109.47333 * 300.00579 * 3 2 1 25 25 H 1.08999 * 109.46899 * 60.00585 * 3 2 1 26 26 H 1.09004 * 109.47146 * 180.02562 * 3 2 1 27 27 H 0.97009 * 120.00042 * 179.97438 * 11 10 8 28 28 H 1.09007 * 115.55122 * 278.12662 * 17 16 4 29 29 H 1.08998 * 117.50215 * 359.97438 * 18 17 16 30 30 H 1.08998 * 117.49860 * 145.02485 * 18 17 16 31 31 H 1.09004 * 117.49604 * 214.97855 * 19 17 16 32 32 H 1.08996 * 117.49759 * 0.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 7 1.7648 -0.3328 2.5269 6 7 2.3564 -1.1701 3.3044 7 6 3.0077 -2.0917 2.5663 8 6 3.7715 -3.1716 3.0685 9 1 4.1667 -3.9144 2.3913 10 6 4.0143 -3.2772 4.4405 11 7 3.5353 -2.3762 5.2616 12 14 5.0221 -4.7035 5.1036 13 1 6.3787 -4.6737 4.5004 14 1 5.1335 -4.5867 6.5798 15 1 4.3547 -5.9842 4.7578 16 6 2.7933 -1.7959 1.2250 17 6 3.3234 -2.5573 0.0374 18 6 4.8075 -2.9291 0.0417 19 6 4.2971 -1.8291 -0.8913 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.6766 1.9564 -0.8899 25 1 1.6767 1.9563 0.8900 26 1 3.1300 1.4425 -0.0005 27 1 3.7036 -2.4497 6.2142 28 1 2.6285 -3.2641 -0.4162 29 1 5.4006 -2.6226 0.9033 30 1 5.0893 -3.8806 -0.4090 31 1 4.2430 -2.0571 -1.9559 32 1 4.5545 -0.7994 -0.6431 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958545822.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:29 Heat of formation + Delta-G solvation = 83.018447 kcal Electronic energy + Delta-G solvation = -15254.922826 eV Core-core repulsion = 12831.180756 eV Total energy + Delta-G solvation = -2423.742070 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.91742 -37.77118 -36.84696 -35.01608 -31.73892 -30.96592 -28.18161 -27.04469 -24.52529 -23.67595 -22.97632 -21.40759 -20.27357 -18.65621 -17.32961 -16.72388 -16.35784 -15.68212 -15.40906 -15.07272 -14.72863 -13.96130 -13.50582 -13.37830 -13.12647 -12.91808 -12.81980 -12.56552 -12.36403 -12.30177 -12.17815 -11.95279 -11.59354 -11.33819 -11.20546 -11.10855 -10.55066 -10.19519 -9.29861 -8.26844 -6.13713 1.04264 1.43659 1.47099 1.56208 2.00327 2.34583 2.37217 3.02673 3.56552 3.72187 3.90488 4.03678 4.13339 4.15369 4.25357 4.53667 4.65270 4.67778 4.81449 4.84465 4.88173 4.98058 5.08455 5.15757 5.23448 5.29297 5.37449 5.46271 5.57815 5.65724 6.46143 6.52715 6.94560 7.14160 8.33850 8.73165 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.032574 B = 0.009979 C = 0.008186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.382969 B = 2805.352670 C = 3419.559028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.141 3.859 3 C -0.149 4.149 4 N -0.349 5.349 5 N -0.169 5.169 6 N -0.290 5.290 7 C 0.108 3.892 8 C -0.472 4.472 9 H 0.094 0.906 10 C 0.018 3.982 11 N -0.832 5.832 12 Si 0.983 3.017 13 H -0.256 1.256 14 H -0.281 1.281 15 H -0.259 1.259 16 C -0.061 4.061 17 C -0.076 4.076 18 C -0.157 4.157 19 C -0.154 4.154 20 H 0.111 0.889 21 H 0.046 0.954 22 H 0.047 0.953 23 H 0.118 0.882 24 H 0.112 0.888 25 H 0.045 0.955 26 H 0.046 0.954 27 H 0.270 0.730 28 H 0.119 0.881 29 H 0.072 0.928 30 H 0.121 0.879 31 H 0.131 0.869 32 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.230 0.556 -14.470 14.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.039 3.961 3 C -0.207 4.207 4 N -0.144 5.144 5 N -0.144 5.144 6 N -0.159 5.159 7 C -0.025 4.025 8 C -0.509 4.509 9 H 0.112 0.888 10 C -0.195 4.195 11 N -0.461 5.461 12 Si 0.804 3.196 13 H -0.181 1.181 14 H -0.207 1.207 15 H -0.184 1.184 16 C -0.196 4.196 17 C -0.096 4.096 18 C -0.194 4.194 19 C -0.192 4.192 20 H 0.130 0.870 21 H 0.065 0.935 22 H 0.066 0.934 23 H 0.136 0.864 24 H 0.130 0.870 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.136 0.864 29 H 0.091 0.909 30 H 0.139 0.861 31 H 0.149 0.851 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.568 1.732 -13.302 13.426 hybrid contribution 0.672 -1.009 0.408 1.279 sum 0.104 0.724 -12.894 12.915 Atomic orbital electron populations 1.22075 0.92750 1.02264 1.03721 1.21630 0.96079 0.94267 0.84130 1.22066 1.00866 0.94090 1.03706 1.50126 1.36536 1.20315 1.07425 1.81298 1.25464 1.23374 0.84255 1.75045 1.10909 1.04665 1.25248 1.19578 0.98841 0.96418 0.87632 1.18888 1.31008 1.08072 0.92927 0.88754 1.26776 0.96304 0.99174 0.97284 1.70193 1.38158 1.33828 1.03922 0.85258 0.79124 0.78242 0.76952 1.18066 1.20659 1.18385 1.21358 1.07009 0.95135 0.96140 1.19958 0.93387 1.01812 0.94469 1.22895 0.94633 1.00534 1.01358 1.23060 1.01840 0.96758 0.97511 0.87022 0.93514 0.93382 0.86418 0.86991 0.93568 0.93477 0.92015 0.86372 0.90892 0.86108 0.85068 0.90570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.04 9.46 71.98 0.68 -3.36 16 2 C 0.14 4.32 3.69 44.99 0.17 4.49 16 3 C -0.15 -4.03 9.46 71.98 0.68 -3.35 16 4 N -0.35 -15.57 3.29 -311.28 -1.02 -16.59 16 5 N -0.17 -9.32 13.62 37.02 0.50 -8.82 16 6 N -0.29 -18.11 10.59 -52.51 -0.56 -18.67 16 7 C 0.11 6.28 6.69 39.67 0.27 6.55 16 8 C -0.47 -26.70 8.45 23.43 0.20 -26.50 16 9 H 0.09 4.86 6.74 -2.91 -0.02 4.84 16 10 C 0.02 0.98 5.49 85.18 0.47 1.45 16 11 N -0.83 -50.66 11.94 21.79 0.26 -50.40 16 12 Si 0.98 41.86 29.56 68.60 2.03 43.89 16 13 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 14 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 15 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 16 C -0.06 -2.88 6.56 42.25 0.28 -2.61 16 17 C -0.08 -2.66 5.36 -11.54 -0.06 -2.72 16 18 C -0.16 -4.99 8.91 30.60 0.27 -4.72 16 19 C -0.15 -4.14 9.68 30.60 0.30 -3.85 16 20 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 21 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 22 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 23 H 0.12 3.00 6.90 -2.39 -0.02 2.98 16 24 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 25 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.27 15.24 8.30 -92.70 -0.77 14.47 16 28 H 0.12 3.67 8.14 -2.38 -0.02 3.66 16 29 H 0.07 2.83 7.65 -2.39 -0.02 2.82 16 30 H 0.12 3.06 8.14 -2.39 -0.02 3.04 16 31 H 0.13 2.44 8.14 -2.39 -0.02 2.43 16 32 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -75.28 275.08 5.56 -69.72 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: 1.10 Total: 15.48 kcal Atomic # 6 Polarization: -37.86 SS G_CDS: 3.24 Total: -34.62 kcal Atomic # 7 Polarization: -93.66 SS G_CDS: -0.81 Total: -94.47 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Total: -75.28 5.56 -69.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545822.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.739 kcal (2) G-P(sol) polarization free energy of solvation -75.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds