Wall clock time and date at job start Mon Mar 30 2020 02:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46506 * 109.47046 * 2 1 4 4 C 1.46491 * 120.00000 * 269.99913 * 3 2 1 5 5 C 1.50704 * 109.47396 * 270.00010 * 4 3 2 6 6 H 1.07999 * 119.99718 * 359.97438 * 5 4 3 7 7 C 1.37879 * 120.00364 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99699 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 119.99823 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47084 * 89.99897 * 9 7 5 11 11 H 1.48505 * 109.46665 * 209.99753 * 9 7 5 12 12 H 1.48501 * 109.47247 * 329.99644 * 9 7 5 13 13 C 1.40048 * 119.99834 * 89.99955 * 3 2 1 14 14 C 1.39413 * 120.40499 * 359.97438 * 13 3 2 15 15 C 1.38282 * 118.44106 * 179.74768 * 14 13 3 16 16 C 1.39092 * 119.17335 * 0.25173 * 15 14 13 17 17 N 1.39311 * 119.62418 * 179.97438 * 16 15 14 18 18 N 1.32323 * 120.74745 * 0.02562 * 16 15 14 19 19 C 1.31989 * 121.69399 * 359.97438 * 18 16 15 20 20 H 1.08998 * 109.47272 * 300.00021 * 1 2 3 21 21 H 1.09005 * 109.46794 * 59.99696 * 1 2 3 22 22 H 1.08994 * 109.47072 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47272 * 239.99979 * 2 1 3 24 24 H 1.09002 * 109.47045 * 119.99851 * 2 1 3 25 25 H 1.08992 * 109.47512 * 29.99972 * 4 3 2 26 26 H 1.09001 * 109.47187 * 150.00607 * 4 3 2 27 27 H 0.96998 * 119.99758 * 179.97438 * 8 7 5 28 28 H 1.08002 * 120.78339 * 0.02751 * 14 13 3 29 29 H 1.08003 * 120.41446 * 180.22956 * 15 14 13 30 30 H 0.97000 * 120.00365 * 0.02562 * 17 16 15 31 31 H 0.97001 * 119.99711 * 180.02562 * 17 16 15 32 32 H 1.08000 * 119.62067 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2686 5 6 3.6858 1.8351 -1.7037 6 1 4.3429 1.2310 -1.0957 7 6 4.1495 2.3906 -2.8774 8 7 3.3494 3.1266 -3.6175 9 14 5.9135 2.0964 -3.4169 10 1 5.9761 0.8759 -4.2605 11 1 6.3930 3.2641 -4.1992 12 1 6.7736 1.9156 -2.2200 13 6 2.2517 2.0414 1.2129 14 6 2.0217 1.3924 2.4251 15 6 2.2708 2.0808 3.5983 16 6 2.7342 3.3905 3.5306 17 7 2.9877 4.0929 4.7067 18 7 2.9361 3.9771 2.3618 19 6 2.7089 3.3502 1.2228 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.5818 1.6878 -2.0283 26 1 2.0956 3.1411 -1.1383 27 1 3.6757 3.5177 -4.4430 28 1 1.6618 0.3744 2.4475 29 1 2.1071 1.6075 4.5552 30 1 2.8412 3.6683 5.5664 31 1 3.3106 5.0067 4.6658 32 1 2.8855 3.8610 0.2878 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042450587.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:34 Heat of formation + Delta-G solvation = 41.061272 kcal Electronic energy + Delta-G solvation = -14833.619065 eV Core-core repulsion = 12408.057596 eV Total energy + Delta-G solvation = -2425.561470 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.58155 -36.62378 -33.55415 -32.86663 -31.40508 -30.49116 -27.98020 -26.00824 -23.70862 -22.51604 -22.01798 -19.91713 -17.10744 -16.77645 -16.45326 -15.85906 -14.95960 -14.25734 -14.00106 -13.84691 -13.47752 -13.15374 -12.79698 -12.48295 -12.06974 -11.71630 -11.56628 -11.16047 -10.95050 -10.61875 -10.52773 -10.40277 -9.98168 -9.57818 -9.18171 -8.78404 -8.46860 -8.18448 -6.26167 -5.87761 -4.14436 1.92087 2.36342 3.28497 3.35568 3.40216 4.00627 4.24519 4.44090 4.68178 5.24307 5.30570 5.46719 5.58877 5.73333 5.78627 5.82195 5.95102 6.14889 6.30144 6.37919 6.57546 6.66366 6.75098 6.98897 7.22760 7.35089 7.82018 7.84445 7.96594 8.18909 8.29453 8.48072 8.95098 8.96721 9.52739 10.98421 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.025386 B = 0.008813 C = 0.007186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.708033 B = 3176.287778 C = 3895.600920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.124 3.876 3 N -0.611 5.611 4 C 0.252 3.748 5 C -0.532 4.532 6 H 0.059 0.941 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.895 3.105 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.145 3.855 14 C -0.138 4.138 15 C -0.192 4.192 16 C 0.320 3.680 17 N -0.871 5.871 18 N -0.506 5.506 19 C 0.078 3.922 20 H 0.050 0.950 21 H 0.057 0.943 22 H 0.053 0.947 23 H 0.074 0.926 24 H 0.058 0.942 25 H 0.031 0.969 26 H 0.033 0.967 27 H 0.264 0.736 28 H 0.124 0.876 29 H 0.117 0.883 30 H 0.397 0.603 31 H 0.395 0.605 32 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.704 -3.404 11.322 12.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.000 4.000 3 N -0.319 5.319 4 C 0.132 3.868 5 C -0.571 4.571 6 H 0.077 0.923 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.723 3.277 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.198 1.198 13 C 0.038 3.962 14 C -0.169 4.169 15 C -0.218 4.218 16 C 0.084 3.916 17 N -0.418 5.418 18 N -0.222 5.222 19 C -0.084 4.084 20 H 0.069 0.931 21 H 0.076 0.924 22 H 0.072 0.928 23 H 0.093 0.907 24 H 0.076 0.924 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.073 0.927 28 H 0.142 0.858 29 H 0.135 0.865 30 H 0.225 0.775 31 H 0.223 0.777 32 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -3.459 -2.583 10.853 11.679 hybrid contribution 0.767 -0.871 -0.085 1.163 sum -2.692 -3.453 10.768 11.624 Atomic orbital electron populations 1.22237 0.97597 1.00807 1.02135 1.21177 0.92864 0.84221 1.01764 1.47000 1.69065 1.12125 1.03755 1.19222 0.95986 0.92634 0.78912 1.21617 0.97174 1.31962 1.06387 0.92266 1.24957 0.97796 0.94928 0.96333 1.69927 1.35661 1.33394 1.14364 0.86539 0.84793 0.77715 0.78679 1.20675 1.21102 1.19844 1.18718 0.97341 0.93240 0.86935 1.20788 1.05316 0.99985 0.90778 1.20935 1.07967 0.94565 0.98291 1.18086 0.97506 0.89265 0.86745 1.41888 1.78689 1.17254 1.04015 1.67016 1.19850 1.38117 0.97185 1.22252 0.99649 0.91321 0.95216 0.93057 0.92409 0.92766 0.90732 0.92357 0.95124 0.94898 0.92661 0.85795 0.86513 0.77474 0.77745 0.81941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.50 10.24 37.16 0.38 -2.12 16 2 C 0.12 2.14 5.91 -4.04 -0.02 2.12 16 3 N -0.61 -12.77 2.60 -172.93 -0.45 -13.22 16 4 C 0.25 6.23 4.93 -5.20 -0.03 6.21 16 5 C -0.53 -14.45 9.39 -34.44 -0.32 -14.78 16 6 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -25.63 13.29 55.43 0.74 -24.89 16 9 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 12 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 13 C 0.15 2.95 6.57 -83.52 -0.55 2.40 16 14 C -0.14 -2.38 9.30 -39.13 -0.36 -2.74 16 15 C -0.19 -3.07 9.93 -39.25 -0.39 -3.46 16 16 C 0.32 5.53 7.75 -154.80 -1.20 4.33 16 17 N -0.87 -11.26 9.09 31.17 0.28 -10.98 16 18 N -0.51 -10.25 10.39 -12.23 -0.13 -10.38 16 19 C 0.08 1.68 10.38 -17.34 -0.18 1.50 16 20 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 21 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 22 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.07 1.34 8.07 -51.93 -0.42 0.92 16 24 H 0.06 0.90 6.25 -51.93 -0.32 0.58 16 25 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 26 H 0.03 0.86 6.21 -51.93 -0.32 0.54 16 27 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 28 H 0.12 1.87 6.27 -52.49 -0.33 1.54 16 29 H 0.12 1.48 8.06 -52.48 -0.42 1.06 16 30 H 0.40 3.86 8.83 -40.82 -0.36 3.50 16 31 H 0.39 4.79 8.95 -40.82 -0.37 4.42 16 32 H 0.16 3.77 6.14 -52.49 -0.32 3.45 16 LS Contribution 273.47 15.07 4.12 4.12 Total: -1.00 -29.78 273.47 -7.33 -37.11 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -4.10 Total: 6.77 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: -2.77 Total: -4.93 kcal Atomic # 7 Polarization: -59.91 SS G_CDS: 0.44 Total: -59.47 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.78 -7.33 -37.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042450587.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.169 kcal (2) G-P(sol) polarization free energy of solvation -29.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds