Wall clock time and date at job start Mon Mar 30 2020 03:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.52994 * 109.47286 * 230.94882 * 3 2 1 5 5 C 1.53002 * 109.47360 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.47127 * 180.02562 * 5 4 3 7 7 H 1.09002 * 110.01198 * 306.38434 * 6 5 4 8 8 C 1.54264 * 110.03823 * 67.82775 * 6 5 4 9 9 C 1.54892 * 104.19588 * 142.89270 * 8 6 5 10 10 C 1.54879 * 102.74903 * 322.05917 * 9 8 6 11 11 C 1.53874 * 110.03035 * 185.00018 * 6 5 4 12 12 H 1.09002 * 110.03434 * 121.37946 * 11 6 5 13 13 C 1.53002 * 110.03489 * 359.97438 * 11 6 5 14 14 C 1.50696 * 109.46997 * 175.00012 * 13 11 6 15 15 H 1.07999 * 120.00319 * 0.02562 * 14 13 11 16 16 C 1.37885 * 119.99717 * 180.02562 * 14 13 11 17 17 N 1.31516 * 119.99913 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 119.99766 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 H 1.09011 * 109.47083 * 110.95129 * 3 2 1 23 23 H 1.09001 * 109.47577 * 350.95191 * 3 2 1 24 24 H 1.08996 * 109.47204 * 60.00370 * 4 3 2 25 25 H 1.09001 * 109.47485 * 300.00290 * 4 3 2 26 26 H 1.08996 * 109.47200 * 59.99707 * 5 4 3 27 27 H 1.08996 * 109.46801 * 299.99567 * 5 4 3 28 28 H 1.09000 * 110.48725 * 261.57853 * 8 6 5 29 29 H 1.09006 * 110.48106 * 24.21638 * 8 6 5 30 30 H 1.08998 * 110.75308 * 80.37909 * 9 8 6 31 31 H 1.08998 * 110.75377 * 203.55713 * 9 8 6 32 32 H 1.09000 * 110.48930 * 279.26328 * 10 9 8 33 33 H 1.09003 * 110.48608 * 156.61543 * 10 9 8 34 34 H 1.09005 * 109.46767 * 55.00363 * 13 11 6 35 35 H 1.09002 * 109.47113 * 295.00703 * 13 11 6 36 36 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1176 0.9096 1.1202 5 6 4.6476 0.9108 1.1198 6 6 5.1572 1.8194 2.2404 7 1 4.7080 2.8085 2.1520 8 6 4.8186 1.2049 3.6142 9 6 6.0470 1.5434 4.4950 10 6 7.2302 1.3773 3.5096 11 6 6.6906 1.9291 2.1738 12 1 6.9855 2.9715 2.0532 13 6 7.2256 1.0948 1.0082 14 6 8.7118 1.3078 0.8786 15 1 9.2237 1.9715 1.5597 16 6 9.4182 0.6553 -0.1097 17 7 10.7153 0.8408 -0.2225 18 14 8.5327 -0.4920 -1.2881 19 1 8.5271 -1.8678 -0.7292 20 1 7.1345 -0.0277 -1.4743 21 1 9.2326 -0.4926 -2.5979 22 1 2.9712 0.3683 -0.9598 23 1 2.9719 -1.0140 0.1616 24 1 2.7545 0.5420 2.0799 25 1 2.7538 1.9244 0.9586 26 1 5.0104 1.2786 0.1600 27 1 5.0117 -0.1037 1.2813 28 1 3.9176 1.6609 4.0245 29 1 4.6960 0.1250 3.5293 30 1 5.9894 2.5687 4.8603 31 1 6.1312 0.8430 5.3259 32 1 7.4972 0.3253 3.4078 33 1 8.0893 1.9593 3.8434 34 1 6.7328 1.4015 0.0855 35 1 7.0246 0.0397 1.1941 36 1 11.2122 0.3815 -0.9175 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075579955.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:06 Heat of formation + Delta-G solvation = -13.664016 kcal Electronic energy + Delta-G solvation = -14955.814587 eV Core-core repulsion = 12631.420395 eV Total energy + Delta-G solvation = -2324.394193 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.76747 -36.93153 -34.22990 -32.92387 -30.69894 -29.78012 -26.14341 -25.46669 -22.11115 -21.68557 -20.10576 -18.14351 -17.12656 -16.80301 -15.72978 -15.16531 -14.46039 -14.11370 -13.92594 -13.63848 -13.06817 -13.04044 -12.51165 -12.49555 -12.08684 -11.82683 -11.55163 -11.40826 -10.95429 -10.83082 -10.68559 -10.52383 -10.26484 -10.15724 -10.11294 -9.66742 -9.47944 -9.28554 -8.97494 -8.49876 -6.01555 -3.98151 2.67107 2.69922 3.29851 3.37531 3.38951 3.91602 4.45993 4.89684 4.91481 5.08904 5.13678 5.28638 5.32896 5.34984 5.59940 5.65558 5.85231 5.98039 6.00051 6.06042 6.08141 6.13701 6.25595 6.32577 6.43891 6.53668 6.57122 6.73704 6.86048 6.97576 7.09629 7.33658 7.47068 7.51345 7.84817 8.58844 9.05360 9.61553 11.12299 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.021281 B = 0.008368 C = 0.006230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.438626 B = 3345.431957 C = 4493.119011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C 0.213 3.787 3 C -0.032 4.032 4 C -0.116 4.116 5 C -0.116 4.116 6 C -0.089 4.089 7 H 0.062 0.938 8 C -0.117 4.117 9 C -0.130 4.130 10 C -0.105 4.105 11 C -0.074 4.074 12 H 0.061 0.939 13 C -0.008 4.008 14 C -0.515 4.515 15 H 0.070 0.930 16 C 0.064 3.936 17 N -0.907 5.907 18 Si 0.876 3.124 19 H -0.279 1.279 20 H -0.263 1.263 21 H -0.290 1.290 22 H 0.110 0.890 23 H 0.109 0.891 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.019 0.981 35 H 0.013 0.987 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.095 -0.812 3.957 12.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.130 5.130 2 C -0.105 4.105 3 C -0.072 4.072 4 C -0.155 4.155 5 C -0.154 4.154 6 C -0.108 4.108 7 H 0.080 0.920 8 C -0.155 4.155 9 C -0.167 4.167 10 C -0.142 4.142 11 C -0.092 4.092 12 H 0.080 0.920 13 C -0.045 4.045 14 C -0.553 4.553 15 H 0.088 0.912 16 C -0.137 4.137 17 N -0.546 5.546 18 Si 0.704 3.296 19 H -0.204 1.204 20 H -0.188 1.188 21 H -0.217 1.217 22 H 0.128 0.872 23 H 0.127 0.873 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.095 0.905 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.038 0.962 35 H 0.032 0.968 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.650 -0.866 3.838 14.206 hybrid contribution 0.222 -0.638 -0.710 0.980 sum -13.428 -1.503 3.128 13.869 Atomic orbital electron populations 1.81199 1.13282 1.09295 1.09220 1.29457 0.95523 0.92736 0.92746 1.19466 0.80922 1.03897 1.02922 1.21654 0.97680 0.99092 0.97097 1.21867 0.91995 1.01145 1.00346 1.21846 0.97293 0.97937 0.93694 0.91954 1.22441 0.97221 1.00346 0.95480 1.22545 0.96152 1.00343 0.97690 1.22283 0.96275 1.01572 0.94105 1.21669 0.91327 1.00084 0.96145 0.92016 1.19805 0.96636 0.94665 0.93362 1.21221 0.91364 1.27259 1.15446 0.91179 1.25049 0.94663 0.96567 0.97379 1.69922 1.06843 1.43757 1.34080 0.86828 0.80497 0.81587 0.80690 1.20448 1.18766 1.21652 0.87226 0.87296 0.91346 0.91424 0.90468 0.91088 0.92849 0.91844 0.92381 0.92576 0.91533 0.92363 0.96243 0.96841 0.92897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.37 18.54 42.15 0.78 -5.58 16 2 C 0.21 2.36 15.43 -20.76 -0.32 2.04 16 3 C -0.03 -0.27 5.70 -29.52 -0.17 -0.44 16 4 C -0.12 -1.12 5.02 -26.73 -0.13 -1.26 16 5 C -0.12 -1.47 3.40 -26.73 -0.09 -1.56 16 6 C -0.09 -1.25 2.93 -89.50 -0.26 -1.51 16 7 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 8 C -0.12 -1.48 5.53 -25.07 -0.14 -1.62 16 9 C -0.13 -1.78 6.91 -24.74 -0.17 -1.95 16 10 C -0.10 -1.81 5.91 -25.07 -0.15 -1.96 16 11 C -0.07 -1.33 2.88 -89.50 -0.26 -1.59 16 12 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 13 C -0.01 -0.17 2.23 -27.88 -0.06 -0.23 16 14 C -0.51 -13.94 9.24 -34.44 -0.32 -14.26 16 15 H 0.07 2.07 7.96 -52.49 -0.42 1.66 16 16 C 0.06 1.80 5.47 -17.82 -0.10 1.70 16 17 N -0.91 -27.45 13.96 55.43 0.77 -26.67 16 18 Si 0.88 20.70 27.47 -169.99 -4.67 16.03 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.26 -5.71 6.54 56.52 0.37 -5.34 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H 0.11 0.80 8.14 -51.92 -0.42 0.38 16 23 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.07 0.64 7.51 -51.93 -0.39 0.25 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.08 1.07 6.30 -51.93 -0.33 0.74 16 27 H 0.07 0.93 7.04 -51.93 -0.37 0.57 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.78 7.76 -51.93 -0.40 0.37 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.07 1.23 7.76 -51.93 -0.40 0.83 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.02 0.42 5.35 -51.93 -0.28 0.14 16 35 H 0.01 0.29 6.47 -51.93 -0.34 -0.05 16 36 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 289.10 15.07 4.36 4.36 Total: -1.00 -30.52 289.10 -6.82 -37.34 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: -5.89 Total: -2.84 kcal Atomic # 6 Polarization: -20.46 SS G_CDS: -2.17 Total: -22.63 kcal Atomic # 7 Polarization: -33.81 SS G_CDS: 1.55 Total: -32.26 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.67 Total: 16.03 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -30.52 -6.82 -37.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075579955.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.677 kcal (2) G-P(sol) polarization free energy of solvation -30.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds