Wall clock time and date at job start Mon Mar 30 2020 03:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.53001 * 109.46868 * 248.01429 * 3 2 1 5 5 C 1.52998 * 109.47142 * 179.97438 * 4 3 2 6 6 C 1.53007 * 109.47428 * 180.02562 * 5 4 3 7 7 H 1.08995 * 110.01487 * 306.40068 * 6 5 4 8 8 C 1.54266 * 110.02878 * 67.83723 * 6 5 4 9 9 C 1.55238 * 104.23333 * 142.89793 * 8 6 5 10 10 C 1.54894 * 102.58338 * 322.08174 * 9 8 6 11 11 C 1.53869 * 110.03216 * 185.00100 * 6 5 4 12 12 H 1.08996 * 110.07773 * 0.02582 * 11 6 5 13 13 C 1.53002 * 110.02962 * 121.43454 * 11 6 5 14 14 C 1.50698 * 109.47238 * 183.61918 * 13 11 6 15 15 H 1.07998 * 120.00128 * 0.02562 * 14 13 11 16 16 C 1.37878 * 120.00143 * 179.97438 * 14 13 11 17 17 N 1.31512 * 120.00032 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00084 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47283 * 59.99863 * 18 16 14 20 20 H 1.48497 * 109.47477 * 180.02562 * 18 16 14 21 21 H 1.48509 * 109.47150 * 299.99965 * 18 16 14 22 22 H 1.08999 * 109.46827 * 128.02220 * 3 2 1 23 23 H 1.08999 * 109.47653 * 8.01655 * 3 2 1 24 24 H 1.09008 * 109.46855 * 60.00718 * 4 3 2 25 25 H 1.08997 * 109.47561 * 300.00166 * 4 3 2 26 26 H 1.09008 * 109.47270 * 60.00266 * 5 4 3 27 27 H 1.08999 * 109.47565 * 300.00341 * 5 4 3 28 28 H 1.09005 * 110.48526 * 261.57665 * 8 6 5 29 29 H 1.09007 * 110.48724 * 24.08149 * 8 6 5 30 30 H 1.08996 * 110.89448 * 203.79739 * 9 8 6 31 31 H 1.08993 * 110.76342 * 80.31404 * 9 8 6 32 32 H 1.09002 * 110.48891 * 279.18596 * 10 9 8 33 33 H 1.08998 * 110.48494 * 156.67683 * 10 9 8 34 34 H 1.09006 * 109.47036 * 303.61859 * 13 11 6 35 35 H 1.08996 * 109.47049 * 63.61727 * 13 11 6 36 36 H 0.96999 * 120.00008 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1177 0.5409 1.3376 5 6 4.6476 0.5410 1.3379 6 6 5.1574 1.0807 2.6758 7 1 4.7087 2.0525 2.8814 8 6 4.8179 0.0904 3.8089 9 6 6.0484 0.1545 4.7532 10 6 7.2298 0.2844 3.7598 11 6 6.6909 1.2040 2.6446 12 1 7.0727 0.8800 1.6765 13 6 7.1058 2.6520 2.9132 14 6 8.6027 2.7763 2.7920 15 1 9.1986 1.9095 2.5475 16 6 9.2116 3.9971 2.9924 17 7 8.4859 5.0531 3.2887 18 14 11.0670 4.1514 2.8415 19 1 11.4864 3.7619 1.4711 20 1 11.4698 5.5567 3.1023 21 1 11.7202 3.2579 3.8317 22 1 2.9710 0.6338 -0.8096 23 1 2.9718 -1.0168 -0.1433 24 1 2.7546 -0.0923 2.1473 25 1 2.7539 1.5584 1.4810 26 1 5.0111 1.1739 0.5282 27 1 5.0112 -0.4765 1.1948 28 1 3.9170 0.4067 4.3348 29 1 4.6924 -0.9165 3.4107 30 1 6.1361 -0.7598 5.3401 31 1 5.9920 1.0279 5.4027 32 1 7.4961 -0.6916 3.3540 33 1 8.0904 0.7412 4.2483 34 1 6.6267 3.3080 2.1863 35 1 6.7977 2.9376 3.9189 36 1 8.9143 5.9118 3.4300 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075579957.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:11 Heat of formation + Delta-G solvation = -22.914636 kcal Electronic energy + Delta-G solvation = -14663.840023 eV Core-core repulsion = 12339.044693 eV Total energy + Delta-G solvation = -2324.795330 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.49919 -36.94763 -34.37027 -32.85678 -29.96617 -29.86714 -25.99568 -25.36266 -22.57855 -21.42896 -19.68864 -18.52901 -17.46139 -16.08288 -15.69894 -14.91399 -14.63092 -14.26430 -13.99150 -13.59504 -13.05162 -12.55098 -12.54361 -12.04554 -11.88678 -11.77627 -11.51572 -11.23388 -11.11967 -10.80903 -10.74539 -10.45993 -10.27655 -10.10287 -9.98754 -9.89821 -9.54475 -9.04570 -8.87732 -8.30523 -5.96380 -3.97725 2.65617 2.68411 3.34264 3.39236 3.41248 3.89381 4.48237 4.87486 4.89696 5.14683 5.24361 5.32273 5.37788 5.39497 5.57222 5.63829 5.86413 6.04029 6.10456 6.11770 6.17508 6.21869 6.35565 6.43996 6.50490 6.57124 6.67652 6.88242 7.06707 7.09452 7.34197 7.45786 7.73234 7.89836 8.04813 8.48278 9.09329 9.65774 11.14772 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.036276 B = 0.005435 C = 0.005026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.671237 B = 5150.421764 C = 5569.528316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C 0.211 3.789 3 C -0.029 4.029 4 C -0.117 4.117 5 C -0.109 4.109 6 C -0.092 4.092 7 H 0.071 0.929 8 C -0.117 4.117 9 C -0.124 4.124 10 C -0.114 4.114 11 C -0.079 4.079 12 H 0.057 0.943 13 C 0.030 3.970 14 C -0.515 4.515 15 H 0.054 0.946 16 C 0.056 3.944 17 N -0.897 5.897 18 Si 0.888 3.112 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.278 1.278 22 H 0.109 0.891 23 H 0.107 0.893 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.044 0.956 33 H 0.076 0.924 34 H 0.013 0.987 35 H 0.015 0.985 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.630 -10.248 -2.918 12.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.128 5.128 2 C -0.107 4.107 3 C -0.069 4.069 4 C -0.156 4.156 5 C -0.146 4.146 6 C -0.110 4.110 7 H 0.089 0.911 8 C -0.155 4.155 9 C -0.162 4.162 10 C -0.151 4.151 11 C -0.098 4.098 12 H 0.075 0.925 13 C -0.007 4.007 14 C -0.554 4.554 15 H 0.072 0.928 16 C -0.144 4.144 17 N -0.536 5.536 18 Si 0.716 3.284 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.203 1.203 22 H 0.127 0.873 23 H 0.125 0.875 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.063 0.937 33 H 0.095 0.905 34 H 0.032 0.968 35 H 0.034 0.966 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.325 -10.055 -2.892 13.370 hybrid contribution 1.495 0.253 -0.065 1.518 sum -6.830 -9.802 -2.957 12.307 Atomic orbital electron populations 1.81209 1.13308 1.09267 1.08992 1.29438 0.95537 0.92820 0.92868 1.19446 0.81019 1.04920 1.01553 1.21632 0.97320 1.01991 0.94624 1.21700 0.92750 1.01455 0.98717 1.21936 0.97583 0.98418 0.93094 0.91097 1.22489 0.97545 0.98721 0.96708 1.22531 0.95569 1.00451 0.97626 1.22359 0.98150 0.98098 0.96534 1.21859 0.91318 0.99052 0.97546 0.92489 1.19170 0.95677 0.89039 0.96769 1.21239 0.92709 0.94346 1.47057 0.92760 1.25008 0.97816 0.96070 0.95531 1.69952 1.35218 0.99934 1.48518 0.86733 0.86220 0.76926 0.78548 1.20321 1.21412 1.20329 0.87279 0.87470 0.91234 0.91086 0.91361 0.91863 0.92882 0.92347 0.92971 0.91692 0.93710 0.90516 0.96843 0.96630 0.93072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.19 18.54 42.15 0.78 -5.41 16 2 C 0.21 2.22 15.43 -20.76 -0.32 1.90 16 3 C -0.03 -0.21 5.70 -29.52 -0.17 -0.38 16 4 C -0.12 -1.08 5.02 -26.73 -0.13 -1.22 16 5 C -0.11 -1.24 4.34 -26.73 -0.12 -1.36 16 6 C -0.09 -1.39 2.58 -89.50 -0.23 -1.62 16 7 H 0.07 1.18 7.67 -51.93 -0.40 0.78 16 8 C -0.12 -1.59 5.54 -24.88 -0.14 -1.73 16 9 C -0.12 -1.92 6.94 -24.55 -0.17 -2.09 16 10 C -0.11 -2.03 6.15 -25.07 -0.15 -2.18 16 11 C -0.08 -1.50 2.54 -89.50 -0.23 -1.73 16 12 H 0.06 1.08 7.67 -51.93 -0.40 0.68 16 13 C 0.03 0.75 4.18 -27.88 -0.12 0.63 16 14 C -0.52 -14.03 8.11 -34.44 -0.28 -14.31 16 15 H 0.05 1.44 7.65 -52.49 -0.40 1.04 16 16 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 17 N -0.90 -26.55 13.29 55.43 0.74 -25.82 16 18 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H 0.11 0.63 8.14 -51.93 -0.42 0.20 16 23 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.07 0.64 7.51 -51.92 -0.39 0.25 16 25 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.07 0.81 8.14 -51.92 -0.42 0.38 16 27 H 0.06 0.65 8.00 -51.93 -0.42 0.24 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.70 7.76 -51.93 -0.40 0.30 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 1.57 7.07 -51.93 -0.37 1.20 16 34 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 297.74 15.07 4.49 4.49 Total: -1.00 -30.64 297.74 -7.31 -37.94 By element: Atomic # 1 Polarization: 1.21 SS G_CDS: -6.14 Total: -4.92 kcal Atomic # 6 Polarization: -20.43 SS G_CDS: -2.15 Total: -22.58 kcal Atomic # 7 Polarization: -32.74 SS G_CDS: 1.52 Total: -31.22 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.64 -7.31 -37.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075579957.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.028 kcal (2) G-P(sol) polarization free energy of solvation -30.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds