Wall clock time and date at job start Mon Mar 30 2020 03:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99624 * 2 1 4 4 H 1.48504 * 109.47224 * 273.86875 * 3 2 1 5 5 H 1.48496 * 109.47115 * 33.86931 * 3 2 1 6 6 H 1.48502 * 109.46955 * 153.87062 * 3 2 1 7 7 C 1.37873 * 120.00403 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99697 * 353.21199 * 7 2 1 9 9 C 1.50698 * 120.00448 * 172.93333 * 7 2 1 10 10 C 1.53004 * 115.54962 * 298.97402 * 9 7 2 11 11 N 1.46905 * 109.46800 * 294.99800 * 10 9 7 12 12 C 1.46897 * 110.99529 * 183.88315 * 11 10 9 13 13 H 1.08998 * 109.64543 * 325.96332 * 12 11 10 14 14 C 1.53022 * 109.64288 * 86.59888 * 12 11 10 15 15 C 1.50069 * 110.14614 * 169.11804 * 14 12 11 16 16 C 1.29449 * 124.07660 * 342.86642 * 15 14 12 17 17 C 1.50060 * 124.07535 * 0.47421 * 16 15 14 18 18 C 1.53030 * 110.14540 * 342.86213 * 17 16 15 19 19 C 1.53001 * 117.50130 * 153.26235 * 9 7 2 20 20 C 1.53000 * 117.49666 * 84.63921 * 9 7 2 21 21 H 0.96993 * 120.00098 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.46815 * 54.99302 * 10 9 7 23 23 H 1.08991 * 109.47135 * 174.99451 * 10 9 7 24 24 H 1.00902 * 110.99425 * 307.82889 * 11 10 9 25 25 H 1.08997 * 109.36122 * 289.32349 * 14 12 11 26 26 H 1.08999 * 109.35805 * 48.91200 * 14 12 11 27 27 H 1.08005 * 117.96476 * 162.84541 * 15 14 12 28 28 H 1.07994 * 117.95869 * 180.44683 * 16 15 14 29 29 H 1.09002 * 109.35780 * 222.66045 * 17 16 15 30 30 H 1.08993 * 109.36095 * 103.07002 * 17 16 15 31 31 H 1.09000 * 109.64400 * 289.75527 * 18 17 16 32 32 H 1.09004 * 109.81383 * 169.22431 * 18 17 16 33 33 H 1.08995 * 117.49582 * 0.02562 * 19 9 7 34 34 H 1.08996 * 117.49911 * 145.02292 * 19 9 7 35 35 H 1.09007 * 117.49973 * 214.98174 * 20 9 7 36 36 H 1.09000 * 117.49964 * 359.97438 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4147 2.0938 -1.3969 5 1 1.4898 2.6277 0.7802 6 1 3.5852 1.4180 0.6166 7 6 2.0046 -1.1940 -0.0005 8 1 1.4703 -2.1261 0.1096 9 6 3.5030 -1.1989 -0.1611 10 6 4.0283 -0.6073 -1.4707 11 7 3.5862 -1.4410 -2.5966 12 6 4.1486 -0.9554 -3.8638 13 1 4.2309 0.1311 -3.8357 14 6 5.5305 -1.5748 -4.0841 15 6 6.0017 -1.3029 -5.4827 16 6 5.2262 -0.9296 -6.4497 17 6 3.7494 -0.7068 -6.3048 18 6 3.2387 -1.3738 -5.0257 19 6 4.2745 -2.3736 0.4436 20 6 4.3489 -0.9921 1.0969 21 1 -0.4850 0.8400 0.0004 22 1 3.6410 0.4042 -1.5936 23 1 5.1175 -0.5788 -1.4454 24 1 3.8228 -2.4099 -2.4437 25 1 6.2369 -1.1438 -3.3747 26 1 5.4733 -2.6516 -3.9250 27 1 7.0534 -1.4260 -5.6957 28 1 5.6699 -0.7682 -7.4209 29 1 3.2335 -1.1330 -7.1652 30 1 3.5482 0.3635 -6.2592 31 1 3.2666 -2.4573 -5.1412 32 1 2.2166 -1.0530 -4.8244 33 1 3.6982 -3.1431 0.9572 34 1 5.1564 -2.7254 -0.0916 35 1 5.2799 -0.4350 0.9915 36 1 3.8216 -0.8521 2.0406 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084067896.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:33 Heat of formation + Delta-G solvation = 32.583189 kcal Electronic energy + Delta-G solvation = -15347.342091 eV Core-core repulsion = 13024.953328 eV Total energy + Delta-G solvation = -2322.388764 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.75707 -36.99175 -33.78783 -31.98454 -30.64894 -29.01516 -25.91588 -24.18853 -22.82589 -21.61120 -20.95640 -18.97648 -17.82630 -16.30406 -16.02811 -15.00824 -14.40173 -14.23038 -13.82957 -13.47530 -13.19861 -12.93867 -12.73468 -12.35549 -12.06378 -11.94792 -11.77488 -10.94643 -10.67613 -10.60468 -10.53435 -10.36604 -10.17628 -9.98381 -9.34629 -9.03388 -8.93166 -8.57504 -8.31420 -7.57508 -5.97717 -3.94260 2.32778 3.34659 3.44464 3.50161 4.52131 4.55973 4.87693 4.97568 5.07634 5.25330 5.38722 5.40143 5.44200 5.66465 5.70522 5.81238 5.91932 5.98795 6.01176 6.06452 6.11430 6.24774 6.25988 6.49348 6.52935 6.54887 6.61314 6.74408 6.78913 6.98959 7.13387 7.17140 7.80259 7.89797 8.13460 8.63769 9.05239 9.67121 11.15042 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.029675 B = 0.008811 C = 0.007815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.328384 B = 3177.142090 C = 3582.196377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.081 3.919 3 Si 0.871 3.129 4 H -0.281 1.281 5 H -0.296 1.296 6 H -0.255 1.255 7 C -0.463 4.463 8 H 0.074 0.926 9 C 0.006 3.994 10 C 0.097 3.903 11 N -0.657 5.657 12 C 0.086 3.914 13 H 0.072 0.928 14 C -0.121 4.121 15 C -0.151 4.151 16 C -0.157 4.157 17 C -0.092 4.092 18 C -0.107 4.107 19 C -0.187 4.187 20 C -0.198 4.198 21 H 0.262 0.738 22 H 0.061 0.939 23 H 0.005 0.995 24 H 0.337 0.663 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.096 0.904 28 H 0.098 0.902 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.818 -1.359 -9.581 14.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.121 4.121 3 Si 0.700 3.300 4 H -0.208 1.208 5 H -0.223 1.223 6 H -0.179 1.179 7 C -0.500 4.500 8 H 0.092 0.908 9 C 0.005 3.995 10 C -0.032 4.032 11 N -0.286 5.286 12 C -0.024 4.024 13 H 0.090 0.910 14 C -0.160 4.160 15 C -0.170 4.170 16 C -0.175 4.175 17 C -0.129 4.129 18 C -0.146 4.146 19 C -0.224 4.224 20 C -0.236 4.236 21 H 0.071 0.929 22 H 0.080 0.920 23 H 0.023 0.977 24 H 0.156 0.844 25 H 0.084 0.916 26 H 0.092 0.908 27 H 0.114 0.886 28 H 0.116 0.884 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 10.035 -0.905 -9.636 13.942 hybrid contribution 1.534 0.697 0.025 1.685 sum 11.569 -0.208 -9.611 15.042 Atomic orbital electron populations 1.69906 1.06314 1.26730 1.50800 1.24835 0.94396 0.98732 0.94107 0.86992 0.81239 0.83983 0.77802 1.20795 1.22318 1.17901 1.20144 0.86770 0.94367 1.48725 0.90777 1.19440 0.94659 0.96903 0.88544 1.21709 0.93743 0.96930 0.90809 1.60327 1.61962 1.06107 1.00210 1.21649 0.90691 0.99187 0.90921 0.90966 1.21275 0.98902 1.01259 0.94582 1.21995 0.98908 1.00959 0.95112 1.22078 0.96079 1.01027 0.98315 1.20480 0.92846 1.01073 0.98506 1.21587 1.00128 1.00222 0.92620 1.22741 1.01748 0.91986 1.05964 1.23066 1.01409 0.99137 0.99997 0.92852 0.92047 0.97702 0.84408 0.91591 0.90817 0.88556 0.88415 0.91219 0.91033 0.92077 0.90380 0.89794 0.91486 0.91657 0.89569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.75 13.96 55.43 0.77 -26.98 16 2 C 0.08 2.34 5.46 -17.82 -0.10 2.25 16 3 Si 0.87 21.92 24.82 -169.99 -4.22 17.70 16 4 H -0.28 -7.02 6.96 56.52 0.39 -6.63 16 5 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 6 H -0.25 -6.06 5.96 56.52 0.34 -5.72 16 7 C -0.46 -12.96 9.31 -34.44 -0.32 -13.29 16 8 H 0.07 2.28 8.06 -52.48 -0.42 1.86 16 9 C 0.01 0.13 0.92 -155.66 -0.14 -0.01 16 10 C 0.10 2.06 4.90 -3.82 -0.02 2.04 16 11 N -0.66 -12.78 6.20 -106.49 -0.66 -13.44 16 12 C 0.09 1.40 2.52 -67.50 -0.17 1.23 16 13 H 0.07 1.26 7.83 -51.93 -0.41 0.85 16 14 C -0.12 -1.67 5.43 -28.18 -0.15 -1.82 16 15 C -0.15 -1.85 9.80 -35.90 -0.35 -2.21 16 16 C -0.16 -1.85 9.80 -35.91 -0.35 -2.21 16 17 C -0.09 -1.13 6.12 -28.18 -0.17 -1.30 16 18 C -0.11 -1.59 5.63 -26.51 -0.15 -1.74 16 19 C -0.19 -3.77 9.96 -26.73 -0.27 -4.04 16 20 C -0.20 -4.21 8.43 -26.73 -0.23 -4.44 16 21 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 22 H 0.06 1.42 4.56 -51.93 -0.24 1.19 16 23 H 0.00 0.10 7.65 -51.93 -0.40 -0.30 16 24 H 0.34 6.17 8.25 -39.29 -0.32 5.85 16 25 H 0.07 0.91 7.79 -51.93 -0.40 0.51 16 26 H 0.07 0.98 7.90 -51.93 -0.41 0.56 16 27 H 0.10 1.03 8.06 -52.48 -0.42 0.61 16 28 H 0.10 0.98 8.06 -52.49 -0.42 0.56 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.87 8.12 -51.93 -0.42 0.45 16 32 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.08 1.71 8.14 -51.93 -0.42 1.28 16 34 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.09 1.89 8.14 -51.93 -0.42 1.47 16 LS Contribution 284.87 15.07 4.29 4.29 Total: -1.00 -29.71 284.87 -8.27 -37.98 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -6.04 Total: 5.98 kcal Atomic # 6 Polarization: -23.11 SS G_CDS: -2.42 Total: -25.53 kcal Atomic # 7 Polarization: -40.53 SS G_CDS: 0.11 Total: -40.42 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.22 Total: 17.70 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -29.71 -8.27 -37.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084067896.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.561 kcal (2) G-P(sol) polarization free energy of solvation -29.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds