Wall clock time and date at job start Mon Mar 30 2020 02:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35196 * 126.00678 * 2 1 4 4 C 1.34571 * 107.62022 * 179.97438 * 3 2 1 5 5 C 1.40485 * 108.03542 * 0.09717 * 4 3 2 6 6 N 1.30127 * 108.23151 * 359.87555 * 5 4 3 7 7 C 1.50950 * 123.48290 * 179.84380 * 5 4 3 8 8 C 1.53366 * 108.20687 * 343.38913 * 7 5 4 9 9 C 1.53024 * 109.74966 * 50.64668 * 8 7 5 10 10 C 1.50879 * 128.32645 * 180.28296 * 4 3 2 11 11 N 1.46899 * 109.71629 * 282.93223 * 10 4 3 12 12 C 1.50703 * 109.71960 * 43.53530 * 10 4 3 13 13 H 1.07997 * 120.00136 * 357.73293 * 12 10 4 14 14 C 1.37875 * 119.99977 * 177.73007 * 12 10 4 15 15 N 1.31513 * 120.00025 * 5.90812 * 14 12 10 16 16 Si 1.86802 * 120.00113 * 185.91264 * 14 12 10 17 17 H 1.48498 * 109.46904 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.46838 * 119.99654 * 16 14 12 19 19 H 1.48496 * 109.46990 * 239.99868 * 16 14 12 20 20 H 1.08999 * 109.46704 * 90.00309 * 1 2 3 21 21 H 1.08994 * 109.47402 * 210.00238 * 1 2 3 22 22 H 1.09001 * 109.47002 * 330.00462 * 1 2 3 23 23 H 1.07998 * 126.18564 * 359.94005 * 3 2 1 24 24 H 1.08999 * 109.71454 * 223.70405 * 7 5 4 25 25 H 1.09001 * 109.75063 * 103.08713 * 7 5 4 26 26 H 1.09001 * 109.42607 * 170.73755 * 8 7 5 27 27 H 1.09004 * 109.42234 * 290.56549 * 8 7 5 28 28 H 1.08998 * 109.43183 * 48.35444 * 9 8 7 29 29 H 1.09000 * 109.43079 * 168.19573 * 9 8 7 30 30 H 1.00905 * 111.00251 * 59.99949 * 11 10 4 31 31 H 1.00903 * 110.99965 * 183.95647 * 11 10 4 32 32 H 0.96998 * 120.00418 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2598 1.0937 0.0000 4 6 3.5368 0.6692 0.0006 5 6 3.5282 -0.7356 -0.0013 6 7 2.2898 -1.1352 -0.0003 7 6 4.7821 -1.5761 -0.0048 8 6 5.9567 -0.6827 -0.4222 9 6 5.9634 0.5918 0.4247 10 6 4.7981 1.4973 0.0067 11 7 5.0451 2.0339 -1.3383 12 6 4.6568 2.6317 0.9886 13 1 3.7310 2.7670 1.5279 14 6 5.7096 3.4970 1.1984 15 7 6.7939 3.4046 0.4599 16 14 5.5959 4.8003 2.5318 17 1 4.2824 4.6948 3.2164 18 1 6.6860 4.5948 3.5190 19 1 5.7291 6.1469 1.9202 20 1 -0.3633 -0.0001 -1.0277 21 1 -0.3634 -0.8899 0.5138 22 1 -0.3633 0.8900 0.5138 23 1 1.9295 2.1219 -0.0009 24 1 4.6732 -2.3960 -0.7147 25 1 4.9605 -1.9755 0.9936 26 1 6.8926 -1.2215 -0.2739 27 1 5.8546 -0.4180 -1.4746 28 1 5.8584 0.3284 1.4772 29 1 6.9049 1.1208 0.2765 30 1 4.2793 2.6169 -1.6413 31 1 5.9185 2.5380 -1.3717 32 1 7.5347 4.0130 0.6078 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084350309.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:11 Heat of formation + Delta-G solvation = 70.319631 kcal Electronic energy + Delta-G solvation = -15539.342833 eV Core-core repulsion = 13115.050101 eV Total energy + Delta-G solvation = -2424.292732 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.57276 -36.41319 -33.57722 -31.63669 -31.14670 -28.80778 -26.74229 -26.24109 -24.72005 -21.49969 -20.68323 -19.55331 -17.60305 -16.27027 -15.89025 -14.83467 -14.64793 -14.18623 -13.81804 -13.25235 -12.97909 -12.81458 -12.22736 -12.16666 -11.77882 -11.36788 -11.12120 -11.07148 -10.80045 -10.62100 -10.23394 -9.96068 -9.69172 -9.29219 -9.13979 -8.53378 -8.42805 -7.43785 -6.98782 -5.99673 -4.15751 2.68466 3.18957 3.22988 3.32585 3.36233 3.75620 4.37151 4.98916 5.19519 5.43758 5.50857 5.61161 5.65869 5.91604 5.97404 6.22044 6.48780 6.54337 6.65211 6.76224 6.81615 6.83655 7.12717 7.40217 7.48642 7.69600 7.81512 7.92707 7.96037 8.26793 8.55089 8.80663 9.08356 9.27791 9.57635 10.94019 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.029005 B = 0.011217 C = 0.009028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.111433 B = 2495.535874 C = 3100.835638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.402 5.402 3 C 0.044 3.956 4 C -0.167 4.167 5 C 0.077 3.923 6 N -0.315 5.315 7 C -0.031 4.031 8 C -0.115 4.115 9 C -0.092 4.092 10 C 0.305 3.695 11 N -0.843 5.843 12 C -0.534 4.534 13 H 0.053 0.947 14 C 0.069 3.931 15 N -0.890 5.890 16 Si 0.889 3.111 17 H -0.275 1.275 18 H -0.283 1.283 19 H -0.286 1.286 20 H 0.062 0.938 21 H 0.078 0.922 22 H 0.078 0.922 23 H 0.164 0.836 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.047 0.953 27 H 0.071 0.929 28 H 0.039 0.961 29 H 0.083 0.917 30 H 0.309 0.691 31 H 0.354 0.646 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.153 -4.168 -1.082 7.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.187 5.187 3 C -0.098 4.098 4 C -0.178 4.178 5 C -0.091 4.091 6 N -0.137 5.137 7 C -0.071 4.071 8 C -0.153 4.153 9 C -0.131 4.131 10 C 0.213 3.787 11 N -0.373 5.373 12 C -0.574 4.574 13 H 0.071 0.929 14 C -0.133 4.133 15 N -0.529 5.529 16 Si 0.718 3.282 17 H -0.200 1.200 18 H -0.209 1.209 19 H -0.212 1.212 20 H 0.080 0.920 21 H 0.096 0.904 22 H 0.096 0.904 23 H 0.181 0.819 24 H 0.084 0.916 25 H 0.088 0.912 26 H 0.066 0.934 27 H 0.090 0.910 28 H 0.058 0.942 29 H 0.101 0.899 30 H 0.118 0.882 31 H 0.170 0.830 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.899 -5.828 -1.335 9.129 hybrid contribution 0.214 2.535 1.377 2.893 sum -6.685 -3.293 0.042 7.452 Atomic orbital electron populations 1.21570 0.75851 1.03334 1.02136 1.48303 1.05445 1.03827 1.61091 1.21931 0.91202 0.92373 1.04268 1.20516 0.95426 0.92846 1.09001 1.22361 0.92664 0.94894 0.99189 1.76799 1.01647 1.08344 1.26899 1.20071 0.89807 0.96086 1.01102 1.21626 0.94813 0.96820 1.02031 1.21484 1.01723 0.93368 0.96522 1.16729 0.85786 0.89498 0.86717 1.59407 1.07852 1.43255 1.26736 1.21932 0.99464 1.11685 1.24298 0.92896 1.24961 0.95245 0.97232 0.95844 1.69697 1.06044 1.38227 1.38967 0.86585 0.78062 0.81364 0.82222 1.19997 1.20949 1.21190 0.91953 0.90358 0.90362 0.81882 0.91642 0.91178 0.93394 0.91040 0.94230 0.89860 0.88203 0.82964 0.92720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.46 11.47 59.85 0.69 2.14 16 2 N -0.40 -7.56 4.02 -68.29 -0.27 -7.83 16 3 C 0.04 0.91 10.72 -17.37 -0.19 0.72 16 4 C -0.17 -3.78 4.97 -104.99 -0.52 -4.30 16 5 C 0.08 1.66 7.10 -82.35 -0.58 1.08 16 6 N -0.31 -6.63 12.56 33.75 0.42 -6.20 16 7 C -0.03 -0.59 6.31 -27.57 -0.17 -0.77 16 8 C -0.11 -2.28 5.85 -26.53 -0.16 -2.43 16 9 C -0.09 -2.16 4.41 -26.52 -0.12 -2.28 16 10 C 0.30 7.33 0.59 -133.62 -0.08 7.25 16 11 N -0.84 -19.75 8.37 -0.90 -0.01 -19.76 16 12 C -0.53 -13.92 7.99 -34.44 -0.28 -14.20 16 13 H 0.05 1.41 7.38 -52.49 -0.39 1.02 16 14 C 0.07 1.79 5.21 -17.82 -0.09 1.70 16 15 N -0.89 -23.33 9.82 55.43 0.54 -22.79 16 16 Si 0.89 20.56 29.54 -169.99 -5.02 15.54 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 20 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 21 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 22 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 23 H 0.16 3.04 8.06 -52.49 -0.42 2.62 16 24 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 25 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.07 1.49 7.67 -51.93 -0.40 1.09 16 28 H 0.04 0.95 8.08 -51.93 -0.42 0.53 16 29 H 0.08 2.10 6.56 -51.93 -0.34 1.76 16 30 H 0.31 7.06 9.00 -39.29 -0.35 6.71 16 31 H 0.35 8.78 6.94 -39.29 -0.27 8.51 16 32 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 LS Contribution 261.09 15.07 3.93 3.93 Total: -1.00 -28.76 261.09 -6.17 -34.93 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: -4.27 Total: 13.26 kcal Atomic # 6 Polarization: -9.58 SS G_CDS: -1.50 Total: -11.08 kcal Atomic # 7 Polarization: -57.27 SS G_CDS: 0.69 Total: -56.58 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -28.76 -6.17 -34.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084350309.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.245 kcal (2) G-P(sol) polarization free energy of solvation -28.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds