Wall clock time and date at job start Mon Mar 30 2020 02:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35197 * 126.00047 * 2 1 4 4 C 1.34573 * 107.61764 * 179.97438 * 3 2 1 5 5 C 1.40492 * 108.03881 * 359.96641 * 4 3 2 6 6 N 1.30129 * 108.22403 * 359.79021 * 5 4 3 7 7 C 1.50946 * 123.48756 * 180.18205 * 5 4 3 8 8 N 1.46896 * 109.74938 * 256.92190 * 7 5 4 9 9 C 1.50692 * 109.71516 * 136.29927 * 7 5 4 10 10 H 1.08004 * 119.99793 * 243.36675 * 9 7 5 11 11 C 1.37874 * 120.00567 * 63.36907 * 9 7 5 12 12 N 1.31520 * 119.99730 * 5.95927 * 11 9 7 13 13 Si 1.86804 * 120.00352 * 185.96339 * 11 9 7 14 14 H 1.48497 * 109.47064 * 94.98959 * 13 11 9 15 15 H 1.48499 * 109.46770 * 214.98624 * 13 11 9 16 16 H 1.48492 * 109.46958 * 334.98366 * 13 11 9 17 17 C 1.53373 * 108.20810 * 16.61592 * 7 5 4 18 18 C 1.53023 * 109.75153 * 309.36311 * 17 7 5 19 19 C 1.50885 * 128.32762 * 179.83831 * 4 3 2 20 20 H 1.08992 * 109.47246 * 90.00120 * 1 2 3 21 21 H 1.09001 * 109.46960 * 209.99996 * 1 2 3 22 22 H 1.09004 * 109.47064 * 329.99836 * 1 2 3 23 23 H 1.07999 * 126.19708 * 359.96558 * 3 2 1 24 24 H 1.00903 * 110.99857 * 298.77355 * 8 7 5 25 25 H 1.00903 * 111.00247 * 62.72142 * 8 7 5 26 26 H 0.97002 * 119.99903 * 180.02562 * 12 11 9 27 27 H 1.08993 * 109.42247 * 189.27082 * 17 7 5 28 28 H 1.09002 * 109.42036 * 69.44109 * 17 7 5 29 29 H 1.09006 * 109.43002 * 311.64341 * 18 17 7 30 30 H 1.09001 * 109.43265 * 191.79798 * 18 17 7 31 31 H 1.08997 * 109.72178 * 316.38923 * 19 4 3 32 32 H 1.09003 * 109.71519 * 77.03992 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2597 1.0938 0.0000 4 6 3.5367 0.6694 0.0006 5 6 3.5283 -0.7355 0.0017 6 7 2.2899 -1.1351 0.0064 7 6 4.7822 -1.5759 0.0066 8 7 5.0248 -2.1133 -1.3388 9 6 4.6302 -2.7101 0.9872 10 1 5.2804 -2.7710 1.8474 11 6 3.6611 -3.6700 0.7863 12 7 2.9479 -3.6631 -0.3187 13 14 3.3610 -4.9802 2.0836 14 1 2.2506 -4.5520 2.9718 15 1 2.9998 -6.2591 1.4210 16 1 4.5939 -5.1708 2.8889 17 6 5.9561 -0.6827 0.4264 18 6 5.9641 0.5924 -0.4195 19 6 4.7980 1.4975 -0.0025 20 1 -0.3633 0.0000 -1.0276 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5139 23 1 1.9295 2.1220 -0.0005 24 1 4.2628 -2.7048 -1.6348 25 1 5.1838 -1.3696 -2.0020 26 1 2.2658 -4.3383 -0.4599 27 1 6.8921 -1.2213 0.2792 28 1 5.8524 -0.4187 1.4789 29 1 5.8606 0.3297 -1.4724 30 1 6.9052 1.1214 -0.2694 31 1 4.6973 2.3183 -0.7126 32 1 4.9796 1.8947 0.9962 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084350317.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:16 Heat of formation + Delta-G solvation = 79.737788 kcal Electronic energy + Delta-G solvation = -15771.867372 eV Core-core repulsion = 13347.983042 eV Total energy + Delta-G solvation = -2423.884330 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.33455 -36.45091 -33.33277 -31.66048 -30.91463 -28.70165 -26.85063 -26.15861 -24.46351 -21.45647 -20.55890 -19.55256 -17.47168 -16.30212 -15.48277 -14.88601 -14.60615 -14.05068 -13.88150 -13.23198 -13.01784 -12.54112 -12.18960 -12.08156 -11.82290 -11.58937 -11.06076 -10.95291 -10.79880 -10.37904 -10.07257 -9.87749 -9.61097 -9.41231 -8.81633 -8.29173 -8.03571 -7.35263 -6.98012 -5.89114 -3.91792 2.91801 3.38558 3.44890 3.48195 3.53003 4.06374 4.54681 5.18023 5.42138 5.48869 5.62376 5.71501 5.77556 5.80598 5.84450 6.23815 6.40040 6.48096 6.52771 6.56979 6.64692 6.74131 6.97585 7.12548 7.28529 7.38458 7.86899 8.00339 8.10999 8.34059 8.82557 9.08245 9.24491 9.41768 9.75638 11.18113 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.024266 B = 0.014499 C = 0.010362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.619967 B = 1930.668462 C = 2701.500978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.115 3.885 2 N -0.417 5.417 3 C 0.020 3.980 4 C -0.252 4.252 5 C 0.084 3.916 6 N -0.212 5.212 7 C 0.316 3.684 8 N -0.829 5.829 9 C -0.512 4.512 10 H 0.059 0.941 11 C 0.083 3.917 12 N -0.856 5.856 13 Si 0.891 3.109 14 H -0.286 1.286 15 H -0.288 1.288 16 H -0.275 1.275 17 C -0.097 4.097 18 C -0.118 4.118 19 C -0.032 4.032 20 H 0.058 0.942 21 H 0.079 0.921 22 H 0.069 0.931 23 H 0.151 0.849 24 H 0.364 0.636 25 H 0.290 0.710 26 H 0.259 0.741 27 H 0.062 0.938 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.879 9.216 -0.574 9.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.199 5.199 3 C -0.123 4.123 4 C -0.265 4.265 5 C -0.090 4.090 6 N -0.029 5.029 7 C 0.222 3.778 8 N -0.363 5.363 9 C -0.550 4.550 10 H 0.077 0.923 11 C -0.122 4.122 12 N -0.492 5.492 13 Si 0.720 3.280 14 H -0.212 1.212 15 H -0.214 1.214 16 H -0.200 1.200 17 C -0.135 4.135 18 C -0.156 4.156 19 C -0.071 4.071 20 H 0.077 0.923 21 H 0.098 0.902 22 H 0.088 0.912 23 H 0.168 0.832 24 H 0.185 0.815 25 H 0.100 0.900 26 H 0.070 0.930 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.399 7.720 -0.363 8.092 hybrid contribution -1.000 0.733 0.460 1.323 sum -3.399 8.453 0.097 9.111 Atomic orbital electron populations 1.21468 0.76647 1.02897 1.01763 1.49216 1.05862 1.04999 1.59849 1.21663 0.91550 0.92667 1.06406 1.20250 0.93714 0.95308 1.17244 1.24450 0.95853 0.92314 0.96371 1.77966 1.01825 1.02397 1.20727 1.16990 0.82439 0.89349 0.89045 1.59648 1.51578 1.22164 1.02942 1.20850 1.17724 1.08368 1.08097 0.92289 1.24848 0.95216 0.97040 0.95096 1.69512 1.21841 1.33633 1.24233 0.86608 0.78238 0.81199 0.81978 1.21199 1.21411 1.19988 1.21580 0.99514 0.94150 0.98283 1.21613 0.96483 0.96934 1.00538 1.19879 0.91609 0.95808 0.99772 0.92297 0.90210 0.91225 0.83184 0.81473 0.89978 0.93034 0.91890 0.92855 0.92275 0.93091 0.92906 0.92491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.77 11.47 59.85 0.69 2.46 16 2 N -0.42 -8.72 4.02 -68.29 -0.27 -8.99 16 3 C 0.02 0.39 11.45 -17.37 -0.20 0.19 16 4 C -0.25 -5.35 5.89 -104.98 -0.62 -5.96 16 5 C 0.08 2.10 5.83 -82.34 -0.48 1.62 16 6 N -0.21 -5.47 10.25 33.75 0.35 -5.13 16 7 C 0.32 7.97 0.69 -133.60 -0.09 7.88 16 8 N -0.83 -20.68 8.87 -0.89 -0.01 -20.69 16 9 C -0.51 -14.40 8.19 -34.45 -0.28 -14.68 16 10 H 0.06 1.66 7.76 -52.48 -0.41 1.25 16 11 C 0.08 2.33 4.93 -17.82 -0.09 2.24 16 12 N -0.86 -24.19 9.22 55.43 0.51 -23.68 16 13 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 14 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 15 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 16 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 17 C -0.10 -2.08 4.78 -26.53 -0.13 -2.21 16 18 C -0.12 -2.11 5.84 -26.52 -0.15 -2.27 16 19 C -0.03 -0.56 6.28 -27.59 -0.17 -0.74 16 20 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 21 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 22 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.15 2.21 8.06 -52.49 -0.42 1.79 16 24 H 0.36 9.89 6.53 -39.29 -0.26 9.64 16 25 H 0.29 6.57 7.31 -39.29 -0.29 6.28 16 26 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 27 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.05 1.15 8.08 -51.93 -0.42 0.73 16 29 H 0.06 1.08 6.49 -51.93 -0.34 0.74 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 258.09 15.07 3.89 3.89 Total: -1.00 -31.44 258.09 -6.31 -37.75 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -4.22 Total: 11.30 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: -1.53 Total: -11.48 kcal Atomic # 7 Polarization: -59.06 SS G_CDS: 0.57 Total: -58.49 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -31.44 -6.31 -37.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084350317.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.489 kcal (2) G-P(sol) polarization free energy of solvation -31.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds