Wall clock time and date at job start Mon Mar 30 2020 02:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35197 * 126.00047 * 2 1 4 4 C 1.34573 * 107.61764 * 179.97438 * 3 2 1 5 5 C 1.40492 * 108.03881 * 359.96641 * 4 3 2 6 6 N 1.30129 * 108.22403 * 359.79021 * 5 4 3 7 7 C 1.50946 * 123.48756 * 180.18205 * 5 4 3 8 8 N 1.46896 * 109.74938 * 256.92190 * 7 5 4 9 9 C 1.50692 * 109.71516 * 136.29927 * 7 5 4 10 10 H 1.08004 * 119.99793 * 243.36675 * 9 7 5 11 11 C 1.37874 * 120.00567 * 63.36907 * 9 7 5 12 12 N 1.31520 * 119.99730 * 5.95927 * 11 9 7 13 13 Si 1.86804 * 120.00352 * 185.96339 * 11 9 7 14 14 H 1.48497 * 109.47064 * 94.98959 * 13 11 9 15 15 H 1.48499 * 109.46770 * 214.98624 * 13 11 9 16 16 H 1.48492 * 109.46958 * 334.98366 * 13 11 9 17 17 C 1.53373 * 108.20810 * 16.61592 * 7 5 4 18 18 C 1.53023 * 109.75153 * 309.36311 * 17 7 5 19 19 C 1.50885 * 128.32762 * 179.83831 * 4 3 2 20 20 H 1.08992 * 109.47246 * 90.00120 * 1 2 3 21 21 H 1.09001 * 109.46960 * 209.99996 * 1 2 3 22 22 H 1.09004 * 109.47064 * 329.99836 * 1 2 3 23 23 H 1.07999 * 126.19708 * 359.96558 * 3 2 1 24 24 H 1.00903 * 110.99857 * 298.77355 * 8 7 5 25 25 H 1.00903 * 111.00247 * 62.72142 * 8 7 5 26 26 H 0.97002 * 119.99903 * 180.02562 * 12 11 9 27 27 H 1.08993 * 109.42247 * 189.27082 * 17 7 5 28 28 H 1.09002 * 109.42036 * 69.44109 * 17 7 5 29 29 H 1.09006 * 109.43002 * 311.64341 * 18 17 7 30 30 H 1.09001 * 109.43265 * 191.79798 * 18 17 7 31 31 H 1.08997 * 109.72178 * 316.38923 * 19 4 3 32 32 H 1.09003 * 109.71519 * 77.03992 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2597 1.0938 0.0000 4 6 3.5367 0.6694 0.0006 5 6 3.5283 -0.7355 0.0017 6 7 2.2899 -1.1351 0.0064 7 6 4.7822 -1.5759 0.0066 8 7 5.0248 -2.1133 -1.3388 9 6 4.6302 -2.7101 0.9872 10 1 5.2804 -2.7710 1.8474 11 6 3.6611 -3.6700 0.7863 12 7 2.9479 -3.6631 -0.3187 13 14 3.3610 -4.9802 2.0836 14 1 2.2506 -4.5520 2.9718 15 1 2.9998 -6.2591 1.4210 16 1 4.5939 -5.1708 2.8889 17 6 5.9561 -0.6827 0.4264 18 6 5.9641 0.5924 -0.4195 19 6 4.7980 1.4975 -0.0025 20 1 -0.3633 0.0000 -1.0276 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5139 23 1 1.9295 2.1220 -0.0005 24 1 4.2628 -2.7048 -1.6348 25 1 5.1838 -1.3696 -2.0020 26 1 2.2658 -4.3383 -0.4599 27 1 6.8921 -1.2213 0.2792 28 1 5.8524 -0.4187 1.4789 29 1 5.8606 0.3297 -1.4724 30 1 6.9052 1.1214 -0.2694 31 1 4.6973 2.3183 -0.7126 32 1 4.9796 1.8947 0.9962 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084350317.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:15 Heat of formation + Delta-G solvation = 57.600734 kcal Electronic energy + Delta-G solvation = -15772.827306 eV Core-core repulsion = 13347.983042 eV Total energy + Delta-G solvation = -2424.844265 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.93073 -38.13362 -35.10988 -33.13974 -32.83345 -30.37862 -28.66290 -27.65779 -26.27688 -23.02758 -22.21300 -21.14647 -19.17592 -18.19392 -17.04746 -16.85037 -16.11654 -15.79014 -15.53578 -14.72451 -14.66039 -14.16522 -13.84918 -13.47610 -13.34716 -13.27292 -12.84245 -12.69970 -12.54286 -12.25636 -11.79178 -11.51792 -11.38336 -11.15415 -10.63802 -10.29978 -9.75460 -9.01332 -8.76260 -7.98267 -6.06862 1.37844 1.40182 1.42548 1.49757 2.12442 2.33575 2.50247 3.32868 3.87589 4.18462 4.31578 4.36641 4.38334 4.47934 4.66846 4.68784 4.74874 4.89348 5.01058 5.09081 5.18883 5.24299 5.39082 5.61029 5.65279 5.69133 5.84769 6.25088 6.36221 6.61670 6.75998 7.16845 7.34096 7.54003 7.64475 9.05701 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.024266 B = 0.014499 C = 0.010362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.619967 B = 1930.668462 C = 2701.500978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.422 5.422 3 C 0.035 3.965 4 C -0.278 4.278 5 C 0.058 3.942 6 N -0.271 5.271 7 C 0.302 3.698 8 N -0.832 5.832 9 C -0.538 4.538 10 H 0.044 0.956 11 C 0.045 3.955 12 N -0.866 5.866 13 Si 0.942 3.058 14 H -0.289 1.289 15 H -0.283 1.283 16 H -0.272 1.272 17 C -0.093 4.093 18 C -0.111 4.111 19 C -0.027 4.027 20 H 0.074 0.926 21 H 0.066 0.934 22 H 0.113 0.887 23 H 0.202 0.798 24 H 0.350 0.650 25 H 0.302 0.698 26 H 0.255 0.745 27 H 0.055 0.945 28 H 0.044 0.956 29 H 0.053 0.947 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.315 11.506 -0.536 11.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.205 5.205 3 C -0.109 4.109 4 C -0.290 4.290 5 C -0.114 4.114 6 N -0.090 5.090 7 C 0.209 3.791 8 N -0.365 5.365 9 C -0.577 4.577 10 H 0.063 0.937 11 C -0.159 4.159 12 N -0.503 5.503 13 Si 0.769 3.231 14 H -0.216 1.216 15 H -0.208 1.208 16 H -0.197 1.197 17 C -0.132 4.132 18 C -0.148 4.148 19 C -0.065 4.065 20 H 0.092 0.908 21 H 0.085 0.915 22 H 0.131 0.869 23 H 0.219 0.781 24 H 0.169 0.831 25 H 0.113 0.887 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.822 10.018 -0.324 10.413 hybrid contribution -0.935 0.051 0.445 1.037 sum -3.758 10.069 0.121 10.748 Atomic orbital electron populations 1.21827 0.73928 1.04424 1.03259 1.49501 1.07545 1.04499 1.58964 1.22398 0.90628 0.94221 1.03606 1.20716 0.96132 0.94043 1.18125 1.24333 0.95367 0.94269 0.97478 1.77788 1.03009 1.05494 1.22668 1.17068 0.84523 0.89359 0.88168 1.59562 1.50854 1.22637 1.03473 1.21163 1.17827 1.10064 1.08644 0.93748 1.25414 0.95209 0.98627 0.96608 1.69639 1.21798 1.33790 1.25061 0.85821 0.77803 0.79396 0.80061 1.21622 1.20830 1.19707 1.21491 0.97639 0.95545 0.98496 1.21559 0.98652 0.95446 0.99187 1.19945 0.89419 0.95815 1.01327 0.90786 0.91507 0.86882 0.78097 0.83130 0.88720 0.93547 0.92645 0.93680 0.92862 0.89820 0.89783 0.91322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.02 11.47 127.77 1.47 4.48 16 2 N -0.42 -16.87 4.02 -369.98 -1.49 -18.36 16 3 C 0.04 1.23 11.45 83.33 0.95 2.19 16 4 C -0.28 -11.15 5.89 -20.10 -0.12 -11.26 16 5 C 0.06 2.89 5.83 43.44 0.25 3.14 16 6 N -0.27 -14.03 10.25 -47.13 -0.48 -14.51 16 7 C 0.30 15.49 0.69 2.24 0.00 15.49 16 8 N -0.83 -42.30 8.87 -156.71 -1.39 -43.69 16 9 C -0.54 -31.14 8.19 25.60 0.21 -30.93 16 10 H 0.04 2.59 7.76 -2.91 -0.02 2.57 16 11 C 0.04 2.57 4.93 84.65 0.42 2.99 16 12 N -0.87 -50.22 9.22 21.45 0.20 -50.02 16 13 Si 0.94 46.26 29.54 68.60 2.03 48.29 16 14 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 15 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 16 H -0.27 -13.10 7.11 99.48 0.71 -12.39 16 17 C -0.09 -3.99 4.78 30.73 0.15 -3.84 16 18 C -0.11 -3.71 5.84 30.73 0.18 -3.53 16 19 C -0.03 -0.85 6.28 30.04 0.19 -0.66 16 20 H 0.07 1.86 8.14 -2.39 -0.02 1.85 16 21 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 22 H 0.11 2.19 8.14 -2.38 -0.02 2.17 16 23 H 0.20 4.74 8.06 -2.91 -0.02 4.72 16 24 H 0.35 19.56 6.53 -89.69 -0.59 18.98 16 25 H 0.30 13.78 7.31 -89.69 -0.66 13.12 16 26 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 27 H 0.05 2.37 8.14 -2.39 -0.02 2.36 16 28 H 0.04 1.95 8.08 -2.39 -0.02 1.93 16 29 H 0.05 1.84 6.49 -2.38 -0.02 1.82 16 30 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -69.96 258.09 2.45 -67.50 By element: Atomic # 1 Polarization: 32.83 SS G_CDS: -0.11 Total: 32.73 kcal Atomic # 6 Polarization: -25.64 SS G_CDS: 3.70 Total: -21.94 kcal Atomic # 7 Polarization: -123.41 SS G_CDS: -3.16 Total: -126.58 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -69.96 2.45 -67.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084350317.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.103 kcal (2) G-P(sol) polarization free energy of solvation -69.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds