Wall clock time and date at job start Mon Mar 30 2020 02:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.35967 * 126.07012 * 2 1 4 4 C 1.35708 * 107.54773 * 180.02562 * 3 2 1 5 5 N 1.40799 * 126.06663 * 179.97438 * 4 3 2 6 6 C 1.46499 * 120.00131 * 180.27740 * 5 4 3 7 7 C 1.53002 * 109.47105 * 178.31974 * 6 5 4 8 8 C 1.50699 * 115.55022 * 65.12460 * 7 6 5 9 9 H 1.08001 * 120.00064 * 265.41152 * 8 7 6 10 10 C 1.37874 * 119.99805 * 85.41930 * 8 7 6 11 11 N 1.31511 * 120.00258 * 353.56265 * 10 8 7 12 12 Si 1.86796 * 120.00006 * 173.56606 * 10 8 7 13 13 H 1.48501 * 109.46996 * 89.99661 * 12 10 8 14 14 H 1.48498 * 109.47276 * 209.99857 * 12 10 8 15 15 H 1.48503 * 109.47242 * 329.99842 * 12 10 8 16 16 C 1.53001 * 117.49717 * 279.45288 * 7 6 5 17 17 C 1.52996 * 117.49795 * 210.79744 * 7 6 5 18 18 C 1.40216 * 107.86592 * 0.22857 * 4 3 2 19 19 N 1.30862 * 108.36482 * 359.61016 * 18 4 3 20 20 H 1.08998 * 109.46939 * 89.99920 * 1 2 3 21 21 H 1.08991 * 109.47154 * 210.00439 * 1 2 3 22 22 H 1.09003 * 109.46778 * 330.00645 * 1 2 3 23 23 H 1.07998 * 126.22738 * 0.03900 * 3 2 1 24 24 H 0.97001 * 119.99637 * 0.02562 * 5 4 3 25 25 H 1.08999 * 109.46892 * 298.32080 * 6 5 4 26 26 H 1.09001 * 109.46856 * 58.31784 * 6 5 4 27 27 H 0.97003 * 120.00760 * 185.06881 * 11 10 8 28 28 H 1.09006 * 117.50148 * 0.02562 * 16 7 6 29 29 H 1.09001 * 117.50111 * 145.01991 * 16 7 6 30 30 H 1.09005 * 117.50247 * 214.98111 * 17 7 6 31 31 H 1.09003 * 117.49889 * 359.97438 * 17 7 6 32 32 H 1.08006 * 125.81605 * 179.75238 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2656 1.0990 0.0000 4 6 3.5524 0.6679 -0.0006 5 7 4.6999 1.4837 -0.0013 6 6 6.0321 0.8742 -0.0080 7 6 7.0956 1.9733 -0.0497 8 6 7.1555 2.8661 1.1629 9 1 6.6192 3.8035 1.1704 10 6 7.8951 2.4862 2.2628 11 7 8.4440 1.2919 2.3055 12 14 8.1174 3.6679 3.6923 13 1 7.0195 3.4709 4.6726 14 1 9.4223 3.4076 4.3514 15 1 8.0870 5.0648 3.1891 16 6 7.4057 2.6051 -1.4082 17 6 8.4137 1.6543 -0.7579 18 6 3.5363 -0.7341 -0.0063 19 7 2.2897 -1.1322 -0.0006 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 -0.8899 0.5139 22 1 -0.3633 0.8901 0.5138 23 1 1.9372 2.1279 0.0006 24 1 4.6084 2.4494 -0.0010 25 1 6.1625 0.2763 0.8940 26 1 6.1349 0.2355 -0.8853 27 1 8.9018 0.9968 3.1082 28 1 6.8517 2.2381 -2.2722 29 1 7.6534 3.6665 -1.4249 30 1 9.3243 2.0905 -0.3471 31 1 8.5234 0.6613 -1.1938 32 1 4.4048 -1.3762 -0.0119 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086779540.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:12 Heat of formation + Delta-G solvation = 107.800125 kcal Electronic energy + Delta-G solvation = -14629.602342 eV Core-core repulsion = 12206.934886 eV Total energy + Delta-G solvation = -2422.667456 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.49412 -36.94301 -34.12413 -32.15489 -31.90177 -28.96863 -26.31172 -25.42920 -24.31258 -21.12001 -20.80399 -19.88137 -18.97770 -16.67443 -16.08694 -15.05791 -14.94948 -14.57662 -14.14061 -13.74675 -13.42919 -12.94477 -12.68746 -12.50001 -11.96253 -11.83455 -11.48201 -10.96639 -10.89986 -10.49721 -10.33871 -10.21137 -9.51765 -9.41233 -8.91926 -8.75508 -8.43635 -8.14009 -6.30844 -6.03186 -4.10051 2.31013 2.91420 3.28695 3.36045 3.38449 3.53721 4.38039 4.46858 4.94799 5.25338 5.26388 5.33532 5.42308 5.46996 5.61341 6.05404 6.11968 6.25873 6.40680 6.52906 6.67718 6.74729 6.82732 7.02936 7.13176 7.45490 7.47551 7.56154 7.86540 8.10062 8.33718 8.44306 8.83131 8.91236 9.55723 11.04772 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.031595 B = 0.007207 C = 0.006517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.012553 B = 3884.291425 C = 4295.502592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.117 3.883 2 N -0.385 5.385 3 C -0.062 4.062 4 C 0.091 3.909 5 N -0.725 5.725 6 C 0.180 3.820 7 C 0.032 3.968 8 C -0.494 4.494 9 H 0.058 0.942 10 C 0.073 3.927 11 N -0.878 5.878 12 Si 0.888 3.112 13 H -0.281 1.281 14 H -0.286 1.286 15 H -0.274 1.274 16 C -0.210 4.210 17 C -0.151 4.151 18 C 0.007 3.993 19 N -0.287 5.287 20 H 0.064 0.936 21 H 0.080 0.920 22 H 0.080 0.920 23 H 0.164 0.836 24 H 0.397 0.603 25 H 0.058 0.942 26 H 0.020 0.980 27 H 0.260 0.740 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.543 -0.685 -4.239 11.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 N -0.175 5.175 3 C -0.209 4.209 4 C -0.020 4.020 5 N -0.359 5.359 6 C 0.056 3.944 7 C 0.031 3.969 8 C -0.531 4.531 9 H 0.076 0.924 10 C -0.130 4.130 11 N -0.514 5.514 12 Si 0.716 3.284 13 H -0.207 1.207 14 H -0.212 1.212 15 H -0.199 1.199 16 C -0.248 4.248 17 C -0.189 4.189 18 C -0.181 4.181 19 N -0.110 5.110 20 H 0.082 0.918 21 H 0.099 0.901 22 H 0.098 0.902 23 H 0.181 0.819 24 H 0.231 0.769 25 H 0.076 0.924 26 H 0.039 0.961 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.100 0.900 31 H 0.082 0.918 32 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -11.105 -1.902 -4.133 12.001 hybrid contribution 0.717 1.655 0.901 2.016 sum -10.389 -0.247 -3.232 10.883 Atomic orbital electron populations 1.21592 0.75011 1.03607 1.02333 1.47867 1.05461 1.03275 1.60906 1.21491 0.89690 0.92711 1.17005 1.17931 0.87669 0.90835 1.05531 1.43995 1.01226 1.06553 1.84117 1.20761 0.80661 0.94896 0.98116 1.18986 0.92484 0.95317 0.90070 1.20334 1.29958 1.04409 0.98447 0.92366 1.24953 0.94748 0.95134 0.98175 1.69966 1.36066 1.17612 1.27785 0.86655 0.77518 0.81604 0.82613 1.20732 1.21217 1.19882 1.22995 1.06174 0.97915 0.97685 1.22488 0.95257 0.97239 1.03903 1.23524 0.95068 0.93816 1.05740 1.77059 1.01266 1.09207 1.23482 0.91774 0.90096 0.90184 0.81890 0.76856 0.92430 0.96146 0.92982 0.91656 0.90583 0.89988 0.91794 0.80530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.16 11.48 59.85 0.69 1.85 16 2 N -0.38 -5.93 4.04 -67.79 -0.27 -6.21 16 3 C -0.06 -1.00 11.57 -16.62 -0.19 -1.19 16 4 C 0.09 1.68 6.96 -83.90 -0.58 1.10 16 5 N -0.72 -14.45 5.72 -58.80 -0.34 -14.78 16 6 C 0.18 3.97 5.46 -4.04 -0.02 3.95 16 7 C 0.03 0.76 1.38 -155.66 -0.21 0.55 16 8 C -0.49 -12.94 8.63 -34.44 -0.30 -13.23 16 9 H 0.06 1.52 7.82 -52.49 -0.41 1.11 16 10 C 0.07 1.97 5.39 -17.82 -0.10 1.87 16 11 N -0.88 -24.42 12.91 55.43 0.72 -23.70 16 12 Si 0.89 20.87 29.55 -169.99 -5.02 15.85 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 15 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 16 C -0.21 -4.47 9.96 -26.70 -0.27 -4.73 16 17 C -0.15 -3.46 9.41 -26.70 -0.25 -3.71 16 18 C 0.01 0.13 11.34 -17.22 -0.20 -0.06 16 19 N -0.29 -5.12 12.57 30.70 0.39 -4.73 16 20 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 21 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 22 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.16 2.15 8.06 -52.49 -0.42 1.73 16 24 H 0.40 7.78 8.50 -40.82 -0.35 7.43 16 25 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 26 H 0.02 0.43 8.09 -51.93 -0.42 0.01 16 27 H 0.26 6.98 8.32 -40.82 -0.34 6.64 16 28 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 30 H 0.08 2.01 8.14 -51.93 -0.42 1.58 16 31 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 32 H 0.18 3.02 7.90 -52.48 -0.41 2.60 16 LS Contribution 281.51 15.07 4.24 4.24 Total: -1.00 -29.50 281.51 -6.25 -35.75 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -4.53 Total: 7.20 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: -1.43 Total: -13.62 kcal Atomic # 7 Polarization: -49.92 SS G_CDS: 0.49 Total: -49.43 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -29.50 -6.25 -35.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086779540.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.552 kcal (2) G-P(sol) polarization free energy of solvation -29.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds