Wall clock time and date at job start Mon Mar 30 2020 03:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.39704 * 119.99408 * 2 1 4 4 C 1.38987 * 120.45732 * 0.02562 * 3 2 1 5 5 N 1.31787 * 120.82036 * 179.97438 * 4 3 2 6 6 C 1.31812 * 121.87165 * 0.02562 * 5 4 3 7 7 C 1.38948 * 120.81939 * 359.97438 * 6 5 4 8 8 N 1.39712 * 120.45370 * 180.02562 * 7 6 5 9 9 C 1.46494 * 119.99941 * 179.97438 * 8 7 6 10 10 C 1.46497 * 119.99540 * 359.97438 * 8 7 6 11 11 C 1.50696 * 109.47242 * 90.00520 * 10 8 7 12 12 H 1.08006 * 119.99791 * 359.97438 * 11 10 8 13 13 C 1.37879 * 120.00136 * 179.97438 * 11 10 8 14 14 N 1.31515 * 119.99989 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99979 * 179.97438 * 13 11 10 16 16 H 1.48512 * 109.46821 * 89.99939 * 15 13 11 17 17 H 1.48502 * 109.47452 * 209.99969 * 15 13 11 18 18 H 1.48503 * 109.47360 * 330.00258 * 15 13 11 19 19 C 1.39135 * 120.44777 * 180.02562 * 3 2 1 20 20 H 1.08998 * 109.47359 * 300.00108 * 1 2 3 21 21 H 1.08999 * 109.46708 * 60.00718 * 1 2 3 22 22 H 1.09000 * 109.46617 * 180.02562 * 1 2 3 23 23 H 0.96997 * 120.00244 * 179.97438 * 2 1 3 24 24 H 1.07998 * 119.58978 * 359.96127 * 4 3 2 25 25 H 1.08000 * 119.59479 * 179.97438 * 6 5 4 26 26 H 1.08996 * 109.47611 * 89.99894 * 9 8 7 27 27 H 1.09004 * 109.46527 * 209.99921 * 9 8 7 28 28 H 1.08999 * 109.47051 * 329.99273 * 9 8 7 29 29 H 1.09002 * 109.47016 * 209.99892 * 10 8 7 30 30 H 1.09004 * 109.47463 * 329.99968 * 10 8 7 31 31 H 0.97000 * 119.99821 * 180.02562 * 14 13 11 32 32 H 1.07996 * 120.84885 * 359.74374 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1635 1.2099 0.0000 4 6 1.4780 2.4190 0.0005 5 7 2.1296 3.5646 0.0010 6 6 3.4467 3.6161 0.0006 7 6 4.2047 2.4516 0.0000 8 7 5.6004 2.5151 0.0001 9 6 6.3898 1.2810 0.0001 10 6 6.2743 3.8159 0.0001 11 6 6.5055 4.2618 1.4209 12 1 6.1823 3.6388 2.2418 13 6 7.1296 5.4652 1.6729 14 7 7.5236 6.2236 0.6733 15 14 7.4155 6.0183 3.4341 16 1 8.7341 5.5200 3.9015 17 1 7.3964 7.5019 3.4964 18 1 6.3433 5.4725 4.3046 19 6 3.5548 1.2210 -0.0005 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5137 -0.8901 22 1 -0.3632 -1.0277 0.0005 23 1 1.9501 -0.8400 0.0004 24 1 0.3980 2.4198 0.0003 25 1 3.9430 4.5753 0.0006 26 1 6.5856 0.9749 -1.0275 27 1 7.3353 1.4547 0.5140 28 1 5.8359 0.4954 0.5140 29 1 7.2317 3.7290 -0.5137 30 1 5.6513 4.5480 -0.5137 31 1 7.9630 7.0700 0.8506 32 1 4.1159 0.2982 0.0032 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122011462.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:13 Heat of formation + Delta-G solvation = 24.765006 kcal Electronic energy + Delta-G solvation = -14687.129810 eV Core-core repulsion = 12260.861681 eV Total energy + Delta-G solvation = -2426.268129 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.07338 -38.02059 -36.49828 -34.82407 -32.17042 -30.48391 -29.73375 -27.04725 -26.62069 -24.40735 -23.75895 -21.44874 -18.69373 -18.47708 -17.83330 -17.02161 -16.70161 -16.11691 -15.66278 -15.43919 -15.01412 -14.76102 -14.12759 -14.03008 -13.85003 -13.32518 -13.07580 -12.96340 -12.76336 -12.61704 -12.41444 -11.94877 -11.84625 -11.45243 -10.98909 -10.63464 -10.28626 -8.63558 -8.30269 -7.91450 -6.35674 0.67416 0.76497 1.38057 1.40425 1.50824 2.31857 2.45259 2.72887 3.08417 3.19097 3.98751 4.15000 4.23799 4.37545 4.42652 4.59820 4.60071 4.69414 4.76023 4.89801 5.01611 5.06849 5.18506 5.21251 5.37005 5.66227 5.68481 6.06983 6.33665 6.40771 6.70769 6.81437 6.90719 7.35600 7.42459 8.84987 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.039435 B = 0.006909 C = 0.006515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.856211 B = 4051.579868 C = 4296.492644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.738 5.738 3 C 0.215 3.785 4 C -0.060 4.060 5 N -0.436 5.436 6 C -0.055 4.055 7 C 0.217 3.783 8 N -0.617 5.617 9 C 0.096 3.904 10 C 0.263 3.737 11 C -0.543 4.543 12 H 0.050 0.950 13 C 0.015 3.985 14 N -0.925 5.925 15 Si 0.961 3.039 16 H -0.268 1.268 17 H -0.280 1.280 18 H -0.275 1.275 19 C -0.256 4.256 20 H 0.052 0.948 21 H 0.054 0.946 22 H 0.102 0.898 23 H 0.409 0.591 24 H 0.163 0.837 25 H 0.124 0.876 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.079 0.921 29 H 0.018 0.982 30 H 0.013 0.987 31 H 0.268 0.732 32 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.733 -14.363 -1.120 17.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.368 5.368 3 C 0.107 3.893 4 C -0.225 4.225 5 N -0.144 5.144 6 C -0.219 4.219 7 C 0.107 3.893 8 N -0.324 5.324 9 C -0.047 4.047 10 C 0.142 3.858 11 C -0.582 4.582 12 H 0.068 0.932 13 C -0.185 4.185 14 N -0.565 5.565 15 Si 0.786 3.214 16 H -0.194 1.194 17 H -0.205 1.205 18 H -0.200 1.200 19 C -0.292 4.292 20 H 0.070 0.930 21 H 0.072 0.928 22 H 0.121 0.879 23 H 0.245 0.755 24 H 0.181 0.819 25 H 0.142 0.858 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.098 0.902 29 H 0.036 0.964 30 H 0.031 0.969 31 H 0.076 0.924 32 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -10.104 -13.397 -1.172 16.821 hybrid contribution 1.156 -0.189 0.764 1.398 sum -8.948 -13.586 -0.407 16.273 Atomic orbital electron populations 1.21741 0.78374 1.04183 1.01303 1.44412 1.06684 1.04089 1.81613 1.18550 0.90852 0.88370 0.91527 1.22236 1.00213 0.86245 1.13792 1.67205 1.09261 1.30300 1.07620 1.21879 0.89285 0.97252 1.13472 1.18793 0.84711 0.94505 0.91296 1.46977 1.01737 1.07490 1.76172 1.21677 0.95830 0.85864 1.01336 1.18872 0.91435 0.79867 0.95659 1.21751 1.38495 1.04693 0.93239 0.93214 1.25751 0.95038 0.96298 1.01414 1.70029 1.40684 1.12973 1.32772 0.85509 0.78655 0.77480 0.79743 1.19353 1.20491 1.19955 1.20543 0.92844 0.96625 1.19165 0.92985 0.92762 0.87915 0.75499 0.81944 0.85848 0.92453 0.92005 0.90230 0.96436 0.96906 0.92351 0.83269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.23 9.96 127.77 1.27 2.50 16 2 N -0.74 -14.78 5.89 -360.51 -2.13 -16.91 16 3 C 0.22 6.47 6.67 38.28 0.26 6.73 16 4 C -0.06 -2.07 10.49 84.88 0.89 -1.18 16 5 N -0.44 -18.63 10.35 -194.73 -2.01 -20.64 16 6 C -0.05 -2.54 10.38 84.87 0.88 -1.66 16 7 C 0.22 9.15 6.56 38.28 0.25 9.40 16 8 N -0.62 -26.88 2.99 -726.25 -2.17 -29.05 16 9 C 0.10 3.19 10.22 127.77 1.31 4.49 16 10 C 0.26 13.81 4.92 85.63 0.42 14.23 16 11 C -0.54 -30.64 9.39 25.60 0.24 -30.40 16 12 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 13 C 0.01 0.82 5.46 84.66 0.46 1.28 16 14 N -0.92 -54.59 13.29 21.45 0.28 -54.30 16 15 Si 0.96 44.56 29.54 68.60 2.03 46.59 16 16 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 17 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 18 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 19 C -0.26 -8.57 9.17 22.71 0.21 -8.36 16 20 H 0.05 0.77 7.96 -2.39 -0.02 0.75 16 21 H 0.05 0.77 7.96 -2.39 -0.02 0.75 16 22 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 23 H 0.41 6.32 8.85 -92.71 -0.82 5.50 16 24 H 0.16 4.53 6.75 -2.91 -0.02 4.51 16 25 H 0.12 6.48 6.15 -2.91 -0.02 6.46 16 26 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.06 2.13 8.07 -2.39 -0.02 2.11 16 28 H 0.08 2.21 6.24 -2.39 -0.01 2.19 16 29 H 0.02 0.96 8.07 -2.39 -0.02 0.94 16 30 H 0.01 0.74 6.22 -2.38 -0.01 0.72 16 31 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 32 H 0.15 4.06 6.26 -2.91 -0.02 4.04 16 Total: -1.00 -67.51 271.54 2.49 -65.02 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: 0.31 Total: 12.25 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: 6.19 Total: -2.96 kcal Atomic # 7 Polarization: -114.87 SS G_CDS: -6.03 Total: -120.90 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -67.51 2.49 -65.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122011462.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.786 kcal (2) G-P(sol) polarization free energy of solvation -67.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds