Wall clock time and date at job start Mon Mar 30 2020 02:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.47293 * 2 1 4 4 C 1.46500 * 119.99881 * 89.99716 * 3 2 1 5 5 C 1.50706 * 109.46949 * 270.00337 * 4 3 2 6 6 H 1.07995 * 120.00167 * 359.72205 * 5 4 3 7 7 C 1.37879 * 119.99394 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00338 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99424 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47487 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47233 * 120.00158 * 9 7 5 12 12 H 1.48508 * 109.46883 * 239.99963 * 9 7 5 13 13 C 1.39700 * 120.00053 * 270.00457 * 3 2 1 14 14 C 1.38992 * 120.45231 * 179.72408 * 13 3 2 15 15 N 1.31793 * 120.81806 * 179.67550 * 14 13 3 16 16 C 1.31811 * 121.86998 * 0.63023 * 15 14 13 17 17 C 1.38954 * 120.82130 * 359.65550 * 16 15 14 18 18 N 1.39699 * 120.45303 * 180.02562 * 17 16 15 19 19 C 1.39128 * 120.45272 * 359.97438 * 13 3 2 20 20 H 1.08995 * 109.47243 * 300.00194 * 1 2 3 21 21 H 1.09009 * 109.46781 * 60.00186 * 1 2 3 22 22 H 1.08994 * 109.47154 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.46998 * 240.00412 * 2 1 3 24 24 H 1.08995 * 109.46933 * 119.99939 * 2 1 3 25 25 H 1.09000 * 109.47175 * 150.00363 * 4 3 2 26 26 H 1.09001 * 109.47297 * 29.99871 * 4 3 2 27 27 H 0.96996 * 119.99730 * 179.97438 * 8 7 5 28 28 H 1.07998 * 119.58826 * 359.97438 * 14 13 3 29 29 H 1.07994 * 119.59180 * 179.67649 * 16 15 14 30 30 H 0.97003 * 120.00177 * 179.97438 * 18 17 16 31 31 H 0.96999 * 119.99931 * 359.97438 * 18 17 16 32 32 H 1.07999 * 120.85127 * 359.97438 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 1.2687 5 6 1.0066 2.7822 1.7037 6 1 0.1171 2.7287 1.0937 7 6 0.9949 3.5048 2.8780 8 7 2.0797 3.5744 3.6181 9 14 -0.5621 4.3847 3.4175 10 1 -1.6343 4.1520 2.4170 11 1 -0.9944 3.8608 4.7381 12 1 -0.2949 5.8415 3.5263 13 6 2.2512 2.0398 -1.2098 14 6 2.7091 3.3521 -1.2208 15 7 2.9371 3.9782 -2.3579 16 6 2.7320 3.3995 -3.5243 17 6 2.2695 2.0913 -3.5985 18 7 2.0553 1.4853 -4.8388 19 6 2.0229 1.3928 -2.4202 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5139 -0.8901 22 1 -0.3633 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8901 24 1 1.8933 -0.5138 0.8900 25 1 3.0644 2.7985 1.1384 26 1 2.5505 1.3452 2.0284 27 1 2.0715 4.0830 4.4440 28 1 2.8847 3.8634 -0.2859 29 1 2.9262 3.9487 -4.4336 30 1 1.7327 0.5715 -4.8829 31 1 2.2293 1.9782 -5.6559 32 1 1.6637 0.3746 -2.4448 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122235086.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:36 Heat of formation + Delta-G solvation = 35.520954 kcal Electronic energy + Delta-G solvation = -14951.035720 eV Core-core repulsion = 12525.234004 eV Total energy + Delta-G solvation = -2425.801716 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.57255 -36.60078 -34.50508 -32.82965 -30.97666 -29.87098 -27.91500 -26.51306 -23.44251 -22.96121 -21.71091 -20.01999 -17.03217 -16.90549 -16.45488 -15.73310 -14.96178 -14.66773 -14.27252 -13.80126 -13.51060 -13.04833 -12.79599 -12.21984 -12.12027 -11.51628 -11.42032 -11.18781 -10.93942 -10.79730 -10.67240 -10.47098 -10.08822 -9.78266 -9.21461 -8.78534 -8.48084 -7.44746 -6.53712 -6.03810 -4.15663 2.16386 2.24839 3.27204 3.35735 3.39944 3.92665 4.18924 4.41659 4.71124 5.23247 5.39993 5.51299 5.57790 5.79353 5.81068 5.84778 5.94319 6.12511 6.19545 6.40306 6.63532 6.79275 6.83483 7.00575 7.22442 7.31608 7.71593 7.82129 7.93732 8.13853 8.20495 8.36807 8.92402 8.94088 9.51023 10.97045 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.031228 B = 0.008469 C = 0.007594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.415105 B = 3305.227884 C = 3686.357918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.124 3.876 3 N -0.599 5.599 4 C 0.247 3.753 5 C -0.529 4.529 6 H 0.062 0.938 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.895 3.105 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.282 1.282 13 C 0.236 3.764 14 C -0.015 4.015 15 N -0.415 5.415 16 C -0.063 4.063 17 C 0.203 3.797 18 N -0.878 5.878 19 C -0.262 4.262 20 H 0.073 0.927 21 H 0.049 0.951 22 H 0.048 0.952 23 H 0.058 0.942 24 H 0.070 0.930 25 H 0.038 0.962 26 H 0.033 0.967 27 H 0.263 0.737 28 H 0.160 0.840 29 H 0.134 0.866 30 H 0.393 0.607 31 H 0.395 0.605 32 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.724 -6.574 -11.192 13.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.000 4.000 3 N -0.304 5.304 4 C 0.128 3.872 5 C -0.568 4.568 6 H 0.080 0.920 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.722 3.278 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.208 1.208 13 C 0.124 3.876 14 C -0.182 4.182 15 N -0.122 5.122 16 C -0.225 4.225 17 C 0.097 3.903 18 N -0.418 5.418 19 C -0.298 4.298 20 H 0.092 0.908 21 H 0.068 0.932 22 H 0.067 0.933 23 H 0.076 0.924 24 H 0.088 0.912 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.073 0.927 28 H 0.177 0.823 29 H 0.152 0.848 30 H 0.220 0.780 31 H 0.223 0.777 32 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.361 -5.718 -10.730 12.164 hybrid contribution -1.344 -0.580 0.051 1.465 sum -1.706 -6.297 -10.679 12.515 Atomic orbital electron populations 1.22224 0.96777 1.00464 1.03309 1.21247 0.94154 0.83560 1.01051 1.47246 1.66690 1.12117 1.04325 1.19372 0.96912 0.92454 0.78499 1.21602 0.97990 1.30942 1.06274 0.91987 1.24951 0.96404 0.96278 0.96377 1.69932 1.27446 1.41538 1.14375 0.86489 0.83311 0.79579 0.78384 1.19773 1.21016 1.20813 1.18694 0.90380 0.92298 0.86204 1.22340 1.07499 0.91920 0.96412 1.67286 1.10736 1.36355 0.97851 1.21659 1.12595 0.92309 0.95974 1.18508 0.93101 0.92914 0.85823 1.42281 1.77516 1.17299 1.04689 1.20325 1.17953 1.01364 0.90126 0.90799 0.93184 0.93266 0.92352 0.91180 0.94429 0.94936 0.92686 0.82291 0.84818 0.77978 0.77747 0.86062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.79 10.24 37.16 0.38 -2.41 16 2 C 0.12 2.12 5.95 -4.04 -0.02 2.10 16 3 N -0.60 -12.45 2.59 -173.01 -0.45 -12.89 16 4 C 0.25 6.04 4.96 -5.19 -0.03 6.02 16 5 C -0.53 -14.12 8.92 -34.44 -0.31 -14.43 16 6 H 0.06 1.69 7.43 -52.49 -0.39 1.30 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -25.44 13.29 55.43 0.74 -24.70 16 9 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 10 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 C 0.24 4.82 6.56 -83.66 -0.55 4.27 16 14 C -0.02 -0.33 10.38 -17.29 -0.18 -0.51 16 15 N -0.42 -8.60 10.35 -12.90 -0.13 -8.73 16 16 C -0.06 -1.10 11.05 -17.30 -0.19 -1.30 16 17 C 0.20 3.23 6.78 -83.66 -0.57 2.67 16 18 N -0.88 -9.77 9.10 32.48 0.30 -9.48 16 19 C -0.26 -4.58 9.17 -38.90 -0.36 -4.94 16 20 H 0.07 1.41 7.27 -51.93 -0.38 1.03 16 21 H 0.05 0.84 8.14 -51.92 -0.42 0.42 16 22 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.06 0.87 6.24 -51.93 -0.32 0.54 16 24 H 0.07 1.16 7.89 -51.93 -0.41 0.75 16 25 H 0.04 0.98 6.23 -51.93 -0.32 0.66 16 26 H 0.03 0.83 7.89 -51.93 -0.41 0.42 16 27 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.16 3.75 6.16 -52.49 -0.32 3.43 16 29 H 0.13 1.97 8.06 -52.49 -0.42 1.55 16 30 H 0.39 3.63 8.85 -40.82 -0.36 3.27 16 31 H 0.39 3.48 8.85 -40.82 -0.36 3.12 16 32 H 0.12 1.87 6.27 -52.49 -0.33 1.54 16 LS Contribution 271.39 15.07 4.09 4.09 Total: -1.00 -29.56 271.39 -6.41 -35.97 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -4.01 Total: 6.38 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: -1.92 Total: -6.93 kcal Atomic # 7 Polarization: -56.25 SS G_CDS: 0.45 Total: -55.80 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.56 -6.41 -35.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122235086.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.495 kcal (2) G-P(sol) polarization free energy of solvation -29.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds