Wall clock time and date at job start Mon Mar 30 2020 02:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.47293 * 2 1 4 4 C 1.46500 * 119.99881 * 89.99716 * 3 2 1 5 5 C 1.50706 * 109.46949 * 270.00337 * 4 3 2 6 6 H 1.07995 * 120.00167 * 359.72205 * 5 4 3 7 7 C 1.37879 * 119.99394 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00338 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99424 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47487 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47233 * 120.00158 * 9 7 5 12 12 H 1.48508 * 109.46883 * 239.99963 * 9 7 5 13 13 C 1.39700 * 120.00053 * 270.00457 * 3 2 1 14 14 C 1.38992 * 120.45231 * 179.72408 * 13 3 2 15 15 N 1.31793 * 120.81806 * 179.67550 * 14 13 3 16 16 C 1.31811 * 121.86998 * 0.63023 * 15 14 13 17 17 C 1.38954 * 120.82130 * 359.65550 * 16 15 14 18 18 N 1.39699 * 120.45303 * 180.02562 * 17 16 15 19 19 C 1.39128 * 120.45272 * 359.97438 * 13 3 2 20 20 H 1.08995 * 109.47243 * 300.00194 * 1 2 3 21 21 H 1.09009 * 109.46781 * 60.00186 * 1 2 3 22 22 H 1.08994 * 109.47154 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.46998 * 240.00412 * 2 1 3 24 24 H 1.08995 * 109.46933 * 119.99939 * 2 1 3 25 25 H 1.09000 * 109.47175 * 150.00363 * 4 3 2 26 26 H 1.09001 * 109.47297 * 29.99871 * 4 3 2 27 27 H 0.96996 * 119.99730 * 179.97438 * 8 7 5 28 28 H 1.07998 * 119.58826 * 359.97438 * 14 13 3 29 29 H 1.07994 * 119.59180 * 179.67649 * 16 15 14 30 30 H 0.97003 * 120.00177 * 179.97438 * 18 17 16 31 31 H 0.96999 * 119.99931 * 359.97438 * 18 17 16 32 32 H 1.07999 * 120.85127 * 359.97438 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 1.2687 5 6 1.0066 2.7822 1.7037 6 1 0.1171 2.7287 1.0937 7 6 0.9949 3.5048 2.8780 8 7 2.0797 3.5744 3.6181 9 14 -0.5621 4.3847 3.4175 10 1 -1.6343 4.1520 2.4170 11 1 -0.9944 3.8608 4.7381 12 1 -0.2949 5.8415 3.5263 13 6 2.2512 2.0398 -1.2098 14 6 2.7091 3.3521 -1.2208 15 7 2.9371 3.9782 -2.3579 16 6 2.7320 3.3995 -3.5243 17 6 2.2695 2.0913 -3.5985 18 7 2.0553 1.4853 -4.8388 19 6 2.0229 1.3928 -2.4202 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5139 -0.8901 22 1 -0.3633 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8901 24 1 1.8933 -0.5138 0.8900 25 1 3.0644 2.7985 1.1384 26 1 2.5505 1.3452 2.0284 27 1 2.0715 4.0830 4.4440 28 1 2.8847 3.8634 -0.2859 29 1 2.9262 3.9487 -4.4336 30 1 1.7327 0.5715 -4.8829 31 1 2.2293 1.9782 -5.6559 32 1 1.6637 0.3746 -2.4448 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122235086.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:36 Heat of formation + Delta-G solvation = 15.204073 kcal Electronic energy + Delta-G solvation = -14951.916726 eV Core-core repulsion = 12525.234004 eV Total energy + Delta-G solvation = -2426.682722 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.02891 -38.12971 -35.76525 -34.86282 -32.38455 -31.48465 -29.34205 -28.29358 -25.03794 -24.63057 -23.17604 -21.50467 -18.63669 -18.43089 -18.11501 -17.18394 -16.63180 -16.02700 -15.86083 -15.33269 -14.98054 -14.57020 -14.44660 -13.92625 -13.51086 -13.27939 -13.04122 -12.79848 -12.71313 -12.47610 -12.15651 -12.07713 -11.76688 -11.53546 -10.98525 -10.61646 -10.25036 -8.72110 -8.30528 -7.89283 -6.31727 0.71847 0.79914 1.36847 1.39711 1.50528 2.34150 2.51271 3.07291 3.11010 3.22687 4.02195 4.12337 4.21582 4.35417 4.46380 4.50660 4.63346 4.68893 4.92233 5.00379 5.12966 5.23002 5.26349 5.42465 5.48709 5.71183 5.77704 6.10796 6.45210 6.53086 6.81821 6.86199 7.09688 7.38831 7.45520 8.87334 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.031228 B = 0.008469 C = 0.007594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.415105 B = 3305.227884 C = 3686.357918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.119 3.881 3 N -0.609 5.609 4 C 0.264 3.736 5 C -0.531 4.531 6 H 0.052 0.948 7 C 0.012 3.988 8 N -0.927 5.927 9 Si 0.956 3.044 10 H -0.271 1.271 11 H -0.274 1.274 12 H -0.281 1.281 13 C 0.221 3.779 14 C -0.058 4.058 15 N -0.437 5.437 16 C -0.063 4.063 17 C 0.220 3.780 18 N -0.851 5.851 19 C -0.259 4.259 20 H 0.038 0.962 21 H 0.045 0.955 22 H 0.085 0.915 23 H 0.090 0.910 24 H 0.070 0.930 25 H 0.011 0.989 26 H 0.016 0.984 27 H 0.266 0.734 28 H 0.122 0.878 29 H 0.166 0.834 30 H 0.408 0.592 31 H 0.411 0.589 32 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.883 -7.975 -13.762 16.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.004 4.004 3 N -0.315 5.315 4 C 0.143 3.857 5 C -0.570 4.570 6 H 0.071 0.929 7 C -0.187 4.187 8 N -0.567 5.567 9 Si 0.782 3.218 10 H -0.196 1.196 11 H -0.200 1.200 12 H -0.207 1.207 13 C 0.111 3.889 14 C -0.223 4.223 15 N -0.144 5.144 16 C -0.228 4.228 17 C 0.110 3.890 18 N -0.392 5.392 19 C -0.295 4.295 20 H 0.058 0.942 21 H 0.064 0.936 22 H 0.104 0.896 23 H 0.108 0.892 24 H 0.088 0.912 25 H 0.029 0.971 26 H 0.034 0.966 27 H 0.075 0.925 28 H 0.140 0.860 29 H 0.183 0.817 30 H 0.238 0.762 31 H 0.242 0.758 32 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.532 -7.154 -13.344 15.218 hybrid contribution -0.947 -0.176 0.604 1.137 sum -2.479 -7.329 -12.740 14.906 Atomic orbital electron populations 1.22126 0.96192 1.02172 1.01341 1.21490 0.94570 0.81704 1.02592 1.47089 1.67903 1.13360 1.03154 1.18863 0.95263 0.91518 0.80092 1.21788 0.98276 1.30894 1.06070 0.92930 1.25725 0.99250 0.97089 0.96598 1.70034 1.29261 1.42531 1.14875 0.85529 0.79780 0.78304 0.78200 1.19556 1.19961 1.20693 1.18773 0.91024 0.92010 0.87088 1.21866 1.11415 0.93196 0.95782 1.67183 1.11399 1.37320 0.98518 1.22251 1.11367 0.93349 0.95846 1.18487 0.91054 0.92250 0.87183 1.42214 1.75519 1.17976 1.03484 1.20533 1.17331 1.02398 0.89218 0.94229 0.93561 0.89642 0.89190 0.91180 0.97100 0.96614 0.92516 0.86028 0.81681 0.76193 0.75833 0.83427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.01 10.24 71.98 0.74 -4.28 16 2 C 0.12 3.92 5.95 86.38 0.51 4.44 16 3 N -0.61 -25.79 2.59 -701.28 -1.82 -27.61 16 4 C 0.26 13.64 4.96 85.63 0.42 14.06 16 5 C -0.53 -29.51 8.92 25.60 0.23 -29.28 16 6 H 0.05 2.96 7.43 -2.91 -0.02 2.94 16 7 C 0.01 0.70 5.46 84.66 0.46 1.16 16 8 N -0.93 -54.62 13.29 21.45 0.28 -54.34 16 9 Si 0.96 44.61 29.54 68.60 2.03 46.64 16 10 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 12 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 13 C 0.22 9.09 6.56 38.28 0.25 9.34 16 14 C -0.06 -2.67 10.38 84.88 0.88 -1.79 16 15 N -0.44 -18.23 10.35 -194.72 -2.01 -20.25 16 16 C -0.06 -2.07 11.05 84.87 0.94 -1.13 16 17 C 0.22 6.24 6.78 38.28 0.26 6.50 16 18 N -0.85 -14.59 9.10 -51.17 -0.47 -15.06 16 19 C -0.26 -8.37 9.17 22.71 0.21 -8.16 16 20 H 0.04 1.50 7.27 -2.39 -0.02 1.48 16 21 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 22 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 23 H 0.09 2.38 6.24 -2.39 -0.01 2.37 16 24 H 0.07 2.28 7.89 -2.39 -0.02 2.26 16 25 H 0.01 0.62 6.23 -2.39 -0.01 0.61 16 26 H 0.02 0.85 7.89 -2.39 -0.02 0.84 16 27 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 28 H 0.12 6.33 6.16 -2.91 -0.02 6.31 16 29 H 0.17 4.24 8.06 -2.91 -0.02 4.22 16 30 H 0.41 5.25 8.85 -92.71 -0.82 4.43 16 31 H 0.41 5.02 8.85 -92.71 -0.82 4.20 16 32 H 0.15 3.91 6.27 -2.91 -0.02 3.89 16 Total: -1.00 -66.75 271.39 2.42 -64.33 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -0.50 Total: 15.43 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: 4.90 Total: -9.15 kcal Atomic # 7 Polarization: -113.24 SS G_CDS: -4.01 Total: -117.25 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -66.75 2.42 -64.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122235086.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.537 kcal (2) G-P(sol) polarization free energy of solvation -66.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds