Wall clock time and date at job start Mon Mar 30 2020 03:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34319 * 125.30519 * 2 1 4 4 C 1.46979 * 106.48817 * 180.24741 * 3 2 1 5 5 C 1.41351 * 127.11121 * 179.72090 * 4 3 2 6 6 H 1.07996 * 119.99426 * 180.02562 * 5 4 3 7 7 C 1.39670 * 120.00161 * 0.02562 * 5 4 3 8 8 N 1.31064 * 120.00006 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00275 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46832 * 60.00238 * 9 7 5 11 11 H 1.48500 * 109.47534 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47135 * 300.00348 * 9 7 5 13 13 C 1.39264 * 105.77433 * 359.73411 * 4 3 2 14 14 C 1.50703 * 126.03491 * 180.02562 * 13 4 3 15 15 N 1.34919 * 107.92837 * 0.02562 * 13 4 3 16 16 C 1.46503 * 124.78978 * 179.97438 * 15 13 4 17 17 C 1.53000 * 109.47034 * 73.16311 * 16 15 13 18 18 C 1.53002 * 109.47125 * 313.16417 * 16 15 13 19 19 C 1.53001 * 109.46627 * 193.16365 * 16 15 13 20 20 H 1.09003 * 109.47178 * 255.85933 * 1 2 3 21 21 H 1.08996 * 109.47255 * 15.86619 * 1 2 3 22 22 H 1.09012 * 109.47189 * 135.86082 * 1 2 3 23 23 H 1.08008 * 126.75758 * 359.96233 * 3 2 1 24 24 H 0.96997 * 119.99787 * 179.97438 * 8 7 5 25 25 H 1.08997 * 109.47265 * 263.57035 * 14 13 4 26 26 H 1.09002 * 109.47288 * 23.57668 * 14 13 4 27 27 H 1.09004 * 109.46807 * 143.57477 * 14 13 4 28 28 H 1.08999 * 109.47091 * 299.21563 * 17 16 15 29 29 H 1.09004 * 109.47007 * 179.21190 * 17 16 15 30 30 H 1.08999 * 109.46941 * 59.21863 * 17 16 15 31 31 H 1.08994 * 109.46811 * 186.23501 * 18 16 15 32 32 H 1.09001 * 109.46663 * 306.23424 * 18 16 15 33 33 H 1.08996 * 109.47137 * 66.23283 * 18 16 15 34 34 H 1.08997 * 109.47335 * 298.25914 * 19 16 15 35 35 H 1.08999 * 109.47412 * 58.26100 * 19 16 15 36 36 H 1.08999 * 109.46394 * 178.25901 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2832 1.0962 0.0000 4 6 3.6745 0.6221 -0.0061 5 6 4.8453 1.4140 -0.0137 6 1 5.8165 0.9417 -0.0181 7 6 4.7461 2.8072 -0.0156 8 7 3.5674 3.3803 -0.0098 9 14 6.2934 3.8537 -0.0264 10 1 7.0885 3.5490 -1.2431 11 1 5.9191 5.2908 -0.0262 12 1 7.1027 3.5533 1.1819 13 6 3.6006 -0.7686 -0.0031 14 6 4.7705 -1.7186 -0.0066 15 7 2.2967 -1.1152 0.0036 16 6 1.7979 -2.4927 0.0079 17 6 2.0236 -3.1124 1.3885 18 6 2.5472 -3.3098 -1.0465 19 6 0.3021 -2.4944 -0.3136 20 1 -0.3634 -0.2511 0.9965 21 1 -0.3633 0.9885 -0.2809 22 1 -0.3634 -0.7376 -0.7157 23 1 1.9506 2.1237 -0.0006 24 1 3.4986 4.3478 -0.0108 25 1 4.9753 -2.0389 -1.0281 26 1 5.6481 -1.2157 0.3995 27 1 4.5340 -2.5884 0.6064 28 1 3.0905 -3.1238 1.6116 29 1 1.6399 -4.1326 1.3959 30 1 1.5012 -2.5223 2.1414 31 1 2.1025 -4.3021 -1.1208 32 1 2.4785 -2.8076 -2.0115 33 1 3.5944 -3.4015 -0.7585 34 1 -0.2353 -1.9383 0.4546 35 1 0.1383 -2.0250 -1.2835 36 1 -0.0624 -3.5213 -0.3408 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161238534.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:52 Heat of formation + Delta-G solvation = 52.321075 kcal Electronic energy + Delta-G solvation = -15822.963939 eV Core-core repulsion = 13501.431074 eV Total energy + Delta-G solvation = -2321.532865 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.94733 -35.49343 -32.96549 -32.07115 -28.87954 -27.98356 -26.93289 -26.83247 -25.08071 -22.31208 -20.14914 -18.84939 -17.15091 -16.01047 -14.80968 -14.58422 -14.43225 -13.88603 -13.24668 -13.05620 -12.76079 -12.47748 -12.15852 -11.77410 -11.66520 -11.52395 -11.40334 -11.29872 -11.08348 -11.03264 -10.87299 -10.63229 -10.34230 -10.06364 -9.79311 -9.56875 -9.05283 -9.00230 -6.80467 -6.30774 -6.17587 -3.72647 3.20220 3.28213 3.31806 3.77881 4.21797 4.31166 4.57979 5.08203 5.22953 5.39065 5.75190 5.80485 5.82134 5.84204 5.94177 6.02654 6.07765 6.20743 6.24029 6.27331 6.36341 6.38231 6.53375 6.56024 6.62822 6.68720 6.71695 7.00828 7.53131 7.64390 7.96154 8.13992 8.53057 8.76584 9.14726 9.21715 9.49467 9.52032 10.78154 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.039665 B = 0.009007 C = 0.007750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.741079 B = 3108.107747 C = 3612.178605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.029 4.029 3 C -0.191 4.191 4 C 0.043 3.957 5 C -0.437 4.437 6 H 0.063 0.937 7 C 0.067 3.933 8 N -0.830 5.830 9 Si 0.904 3.096 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.272 1.272 13 C -0.148 4.148 14 C -0.042 4.042 15 N -0.441 5.441 16 C 0.163 3.837 17 C -0.155 4.155 18 C -0.161 4.161 19 C -0.164 4.164 20 H 0.046 0.954 21 H 0.057 0.943 22 H 0.069 0.931 23 H 0.150 0.850 24 H 0.266 0.734 25 H 0.034 0.966 26 H 0.058 0.942 27 H 0.035 0.965 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.431 -9.245 -0.035 10.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.137 4.137 3 C -0.220 4.220 4 C 0.036 3.964 5 C -0.471 4.471 6 H 0.081 0.919 7 C -0.143 4.143 8 N -0.461 5.461 9 Si 0.731 3.269 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.197 1.197 13 C -0.253 4.253 14 C -0.100 4.100 15 N -0.125 5.125 16 C 0.078 3.922 17 C -0.213 4.213 18 C -0.218 4.218 19 C -0.221 4.221 20 H 0.065 0.935 21 H 0.076 0.924 22 H 0.088 0.912 23 H 0.168 0.832 24 H 0.077 0.923 25 H 0.052 0.948 26 H 0.076 0.924 27 H 0.054 0.946 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.608 -9.346 -0.033 10.421 hybrid contribution 0.765 0.578 0.026 0.959 sum -3.844 -8.768 -0.007 9.573 Atomic orbital electron populations 1.20918 0.91498 1.02019 1.00241 1.19884 0.91499 0.86864 1.15468 1.22430 0.92369 0.96655 1.10508 1.18261 0.92635 0.88499 0.96967 1.18670 0.92499 0.90181 1.45736 0.91872 1.25644 0.96398 0.98432 0.93871 1.69795 1.23496 1.10473 1.42341 0.86463 0.82689 0.78643 0.79146 1.19717 1.20909 1.19729 1.19848 0.82758 0.94064 1.28616 1.19897 0.95594 0.95840 0.98639 1.42784 1.04963 1.02141 1.62580 1.20307 0.93816 0.83022 0.95083 1.22231 1.02655 0.99626 0.96774 1.22345 1.01785 0.98627 0.99075 1.22781 0.95072 1.01540 1.02711 0.93534 0.92355 0.91215 0.83234 0.92290 0.94751 0.92359 0.94648 0.91862 0.92556 0.92498 0.92640 0.92273 0.90899 0.90355 0.91314 0.92618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.64 8.25 36.00 0.30 -1.34 16 2 C -0.03 -0.68 6.69 -81.83 -0.55 -1.23 16 3 C -0.19 -5.25 9.74 -37.42 -0.36 -5.62 16 4 C 0.04 1.22 6.10 -104.79 -0.64 0.58 16 5 C -0.44 -12.59 9.11 -37.86 -0.34 -12.94 16 6 H 0.06 1.75 7.19 -52.49 -0.38 1.38 16 7 C 0.07 1.86 5.49 -17.34 -0.10 1.77 16 8 N -0.83 -23.40 10.42 55.53 0.58 -22.82 16 9 Si 0.90 20.72 29.56 -169.99 -5.02 15.70 16 10 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 13 C -0.15 -3.66 6.57 -80.85 -0.53 -4.19 16 14 C -0.04 -0.89 8.18 36.01 0.29 -0.59 16 15 N -0.44 -9.78 2.59 -93.45 -0.24 -10.02 16 16 C 0.16 2.79 1.02 -131.82 -0.13 2.66 16 17 C -0.15 -2.41 8.61 37.16 0.32 -2.09 16 18 C -0.16 -2.51 7.99 37.16 0.30 -2.21 16 19 C -0.16 -2.38 6.56 37.16 0.24 -2.13 16 20 H 0.05 0.78 7.34 -51.93 -0.38 0.40 16 21 H 0.06 1.04 8.11 -51.93 -0.42 0.62 16 22 H 0.07 1.11 4.27 -51.92 -0.22 0.89 16 23 H 0.15 4.31 6.03 -52.48 -0.32 3.99 16 24 H 0.27 6.97 8.30 -40.82 -0.34 6.64 16 25 H 0.03 0.67 7.55 -51.93 -0.39 0.28 16 26 H 0.06 1.24 7.35 -51.93 -0.38 0.86 16 27 H 0.03 0.65 4.98 -51.93 -0.26 0.39 16 28 H 0.06 1.04 6.09 -51.93 -0.32 0.72 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.07 1.16 4.68 -51.93 -0.24 0.92 16 34 H 0.08 1.13 5.13 -51.93 -0.27 0.87 16 35 H 0.07 1.03 6.49 -51.93 -0.34 0.69 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 272.42 15.07 4.11 4.11 Total: -1.00 -30.39 272.42 -6.95 -37.34 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -5.16 Total: 3.04 kcal Atomic # 6 Polarization: -26.13 SS G_CDS: -1.20 Total: -27.34 kcal Atomic # 7 Polarization: -33.18 SS G_CDS: 0.34 Total: -32.84 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -30.39 -6.95 -37.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161238534.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.659 kcal (2) G-P(sol) polarization free energy of solvation -30.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds