Wall clock time and date at job start Mon Mar 30 2020 03:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34319 * 125.30519 * 2 1 4 4 C 1.46979 * 106.48817 * 180.24741 * 3 2 1 5 5 C 1.41351 * 127.11121 * 179.72090 * 4 3 2 6 6 H 1.07996 * 119.99426 * 180.02562 * 5 4 3 7 7 C 1.39670 * 120.00161 * 0.02562 * 5 4 3 8 8 N 1.31064 * 120.00006 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00275 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46832 * 60.00238 * 9 7 5 11 11 H 1.48500 * 109.47534 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47135 * 300.00348 * 9 7 5 13 13 C 1.39264 * 105.77433 * 359.73411 * 4 3 2 14 14 C 1.50703 * 126.03491 * 180.02562 * 13 4 3 15 15 N 1.34919 * 107.92837 * 0.02562 * 13 4 3 16 16 C 1.46503 * 124.78978 * 179.97438 * 15 13 4 17 17 C 1.53000 * 109.47034 * 73.16311 * 16 15 13 18 18 C 1.53002 * 109.47125 * 313.16417 * 16 15 13 19 19 C 1.53001 * 109.46627 * 193.16365 * 16 15 13 20 20 H 1.09003 * 109.47178 * 255.85933 * 1 2 3 21 21 H 1.08996 * 109.47255 * 15.86619 * 1 2 3 22 22 H 1.09012 * 109.47189 * 135.86082 * 1 2 3 23 23 H 1.08008 * 126.75758 * 359.96233 * 3 2 1 24 24 H 0.96997 * 119.99787 * 179.97438 * 8 7 5 25 25 H 1.08997 * 109.47265 * 263.57035 * 14 13 4 26 26 H 1.09002 * 109.47288 * 23.57668 * 14 13 4 27 27 H 1.09004 * 109.46807 * 143.57477 * 14 13 4 28 28 H 1.08999 * 109.47091 * 299.21563 * 17 16 15 29 29 H 1.09004 * 109.47007 * 179.21190 * 17 16 15 30 30 H 1.08999 * 109.46941 * 59.21863 * 17 16 15 31 31 H 1.08994 * 109.46811 * 186.23501 * 18 16 15 32 32 H 1.09001 * 109.46663 * 306.23424 * 18 16 15 33 33 H 1.08996 * 109.47137 * 66.23283 * 18 16 15 34 34 H 1.08997 * 109.47335 * 298.25914 * 19 16 15 35 35 H 1.08999 * 109.47412 * 58.26100 * 19 16 15 36 36 H 1.08999 * 109.46394 * 178.25901 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2832 1.0962 0.0000 4 6 3.6745 0.6221 -0.0061 5 6 4.8453 1.4140 -0.0137 6 1 5.8165 0.9417 -0.0181 7 6 4.7461 2.8072 -0.0156 8 7 3.5674 3.3803 -0.0098 9 14 6.2934 3.8537 -0.0264 10 1 7.0885 3.5490 -1.2431 11 1 5.9191 5.2908 -0.0262 12 1 7.1027 3.5533 1.1819 13 6 3.6006 -0.7686 -0.0031 14 6 4.7705 -1.7186 -0.0066 15 7 2.2967 -1.1152 0.0036 16 6 1.7979 -2.4927 0.0079 17 6 2.0236 -3.1124 1.3885 18 6 2.5472 -3.3098 -1.0465 19 6 0.3021 -2.4944 -0.3136 20 1 -0.3634 -0.2511 0.9965 21 1 -0.3633 0.9885 -0.2809 22 1 -0.3634 -0.7376 -0.7157 23 1 1.9506 2.1237 -0.0006 24 1 3.4986 4.3478 -0.0108 25 1 4.9753 -2.0389 -1.0281 26 1 5.6481 -1.2157 0.3995 27 1 4.5340 -2.5884 0.6064 28 1 3.0905 -3.1238 1.6116 29 1 1.6399 -4.1326 1.3959 30 1 1.5012 -2.5223 2.1414 31 1 2.1025 -4.3021 -1.1208 32 1 2.4785 -2.8076 -2.0115 33 1 3.5944 -3.4015 -0.7585 34 1 -0.2353 -1.9383 0.4546 35 1 0.1383 -2.0250 -1.2835 36 1 -0.0624 -3.5213 -0.3408 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161238534.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:52 Heat of formation + Delta-G solvation = 35.111122 kcal Electronic energy + Delta-G solvation = -15823.710218 eV Core-core repulsion = 13501.431074 eV Total energy + Delta-G solvation = -2322.279144 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.66863 -37.04441 -34.91021 -33.74331 -30.66164 -29.70301 -28.32164 -28.17118 -26.83173 -24.11885 -21.73924 -20.77857 -18.78161 -18.03663 -16.48446 -16.33533 -15.92459 -15.25344 -14.83776 -14.63146 -14.29649 -13.87560 -13.71557 -13.52627 -13.09569 -13.05311 -12.97267 -12.84209 -12.74172 -12.56747 -12.43658 -12.40286 -12.03139 -11.57397 -11.49503 -11.18356 -10.96984 -10.89658 -8.79035 -8.21356 -8.20049 -5.81813 1.37309 1.39444 1.51084 1.93260 2.35407 2.55329 2.65491 3.72046 3.82103 3.98562 4.12957 4.34568 4.56007 4.58493 4.66879 4.70932 4.74902 4.80924 4.89024 4.89964 4.94137 4.99638 5.03200 5.12277 5.23895 5.25744 5.37031 5.40117 5.44739 5.66968 6.05614 6.12584 6.47072 6.75624 7.13671 7.34524 7.45052 7.55110 8.76305 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.039665 B = 0.009007 C = 0.007750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.741079 B = 3108.107747 C = 3612.178605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.020 4.020 3 C -0.247 4.247 4 C -0.019 4.019 5 C -0.472 4.472 6 H 0.058 0.942 7 C 0.015 3.985 8 N -0.862 5.862 9 Si 0.977 3.023 10 H -0.266 1.266 11 H -0.275 1.275 12 H -0.266 1.266 13 C -0.143 4.143 14 C -0.037 4.037 15 N -0.433 5.433 16 C 0.145 3.855 17 C -0.150 4.150 18 C -0.157 4.157 19 C -0.163 4.163 20 H 0.066 0.934 21 H 0.055 0.945 22 H 0.101 0.899 23 H 0.124 0.876 24 H 0.268 0.732 25 H 0.047 0.953 26 H 0.046 0.954 27 H 0.065 0.935 28 H 0.050 0.950 29 H 0.097 0.903 30 H 0.045 0.955 31 H 0.095 0.905 32 H 0.041 0.959 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.062 0.938 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.192 -11.899 -0.024 12.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.131 4.131 3 C -0.275 4.275 4 C -0.025 4.025 5 C -0.506 4.506 6 H 0.077 0.923 7 C -0.192 4.192 8 N -0.494 5.494 9 Si 0.800 3.200 10 H -0.191 1.191 11 H -0.199 1.199 12 H -0.191 1.191 13 C -0.251 4.251 14 C -0.094 4.094 15 N -0.114 5.114 16 C 0.062 3.938 17 C -0.208 4.208 18 C -0.215 4.215 19 C -0.219 4.219 20 H 0.085 0.915 21 H 0.073 0.927 22 H 0.119 0.881 23 H 0.141 0.859 24 H 0.078 0.922 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.083 0.917 28 H 0.069 0.931 29 H 0.116 0.884 30 H 0.064 0.936 31 H 0.114 0.886 32 H 0.060 0.940 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.081 0.919 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.383 -12.043 -0.021 13.192 hybrid contribution 0.909 1.213 0.024 1.516 sum -4.474 -10.830 0.003 11.718 Atomic orbital electron populations 1.21047 0.87711 1.03069 1.02353 1.20408 0.93827 0.86266 1.12596 1.22306 0.93249 0.96984 1.14936 1.18770 0.93208 0.90704 0.99812 1.18947 0.92655 0.91465 1.47570 0.92327 1.26520 0.99864 0.99400 0.93446 1.69961 1.25442 1.10654 1.43345 0.85343 0.78424 0.76945 0.79288 1.19109 1.19931 1.19118 1.20345 0.84993 0.93704 1.26051 1.19925 0.93648 0.95885 0.99957 1.43205 1.04026 1.04338 1.59878 1.20896 0.95927 0.80118 0.96869 1.22192 1.01949 1.01640 0.95018 1.22324 1.01634 1.00170 0.97351 1.22756 0.92765 1.04145 1.02251 0.91503 0.92650 0.88099 0.85879 0.92164 0.93392 0.93544 0.91692 0.93125 0.88422 0.93605 0.88586 0.94004 0.91500 0.90240 0.91923 0.88710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.97 8.25 71.23 0.59 -2.38 16 2 C -0.02 -0.95 6.69 40.91 0.27 -0.67 16 3 C -0.25 -14.25 9.74 23.67 0.23 -14.02 16 4 C -0.02 -1.11 6.10 -19.97 -0.12 -1.23 16 5 C -0.47 -28.64 9.11 23.38 0.21 -28.43 16 6 H 0.06 3.42 7.19 -2.91 -0.02 3.40 16 7 C 0.01 0.85 5.49 85.15 0.47 1.31 16 8 N -0.86 -51.40 10.42 21.79 0.23 -51.17 16 9 Si 0.98 44.14 29.56 68.60 2.03 46.16 16 10 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 11 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 12 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 13 C -0.14 -7.17 6.57 42.33 0.28 -6.89 16 14 C -0.04 -1.52 8.18 71.24 0.58 -0.93 16 15 N -0.43 -18.81 2.59 -449.57 -1.16 -19.97 16 16 C 0.15 4.47 1.02 3.60 0.00 4.47 16 17 C -0.15 -4.09 8.61 71.98 0.62 -3.47 16 18 C -0.16 -4.30 7.99 71.98 0.57 -3.72 16 19 C -0.16 -3.96 6.56 71.98 0.47 -3.48 16 20 H 0.07 2.08 7.34 -2.39 -0.02 2.06 16 21 H 0.05 1.95 8.11 -2.39 -0.02 1.93 16 22 H 0.10 2.90 4.27 -2.38 -0.01 2.89 16 23 H 0.12 7.63 6.03 -2.91 -0.02 7.61 16 24 H 0.27 14.79 8.30 -92.71 -0.77 14.02 16 25 H 0.05 1.83 7.55 -2.39 -0.02 1.82 16 26 H 0.05 1.99 7.35 -2.39 -0.02 1.98 16 27 H 0.06 2.26 4.98 -2.38 -0.01 2.24 16 28 H 0.05 1.50 6.09 -2.39 -0.01 1.48 16 29 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.04 1.34 8.14 -2.39 -0.02 1.33 16 31 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.07 1.90 4.68 -2.39 -0.01 1.89 16 34 H 0.08 1.94 5.13 -2.39 -0.01 1.93 16 35 H 0.06 1.62 6.49 -2.39 -0.02 1.61 16 36 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -71.00 272.42 6.34 -64.65 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: 1.07 Total: 19.77 kcal Atomic # 6 Polarization: -63.63 SS G_CDS: 4.18 Total: -59.45 kcal Atomic # 7 Polarization: -70.20 SS G_CDS: -0.94 Total: -71.14 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Total: -71.00 6.34 -64.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161238534.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.764 kcal (2) G-P(sol) polarization free energy of solvation -70.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds