Wall clock time and date at job start Mon Mar 30 2020 02:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46900 * 109.46873 * 2 1 4 4 C 1.46906 * 110.99605 * 159.90141 * 3 2 1 5 5 C 1.50703 * 109.46954 * 288.46943 * 4 3 2 6 6 H 1.08003 * 120.00194 * 2.43601 * 5 4 3 7 7 C 1.37874 * 119.99895 * 182.44133 * 5 4 3 8 8 N 1.31521 * 120.00060 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00231 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47103 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47662 * 119.99282 * 9 7 5 12 12 H 1.48504 * 109.47300 * 239.99981 * 9 7 5 13 13 C 1.39003 * 110.99941 * 283.85129 * 3 2 1 14 14 N 1.32680 * 120.09561 * 301.47808 * 13 3 2 15 15 C 1.32221 * 119.90954 * 180.02562 * 14 13 3 16 16 C 1.38200 * 120.10546 * 359.97438 * 15 14 13 17 17 N 1.32245 * 120.18959 * 0.02562 * 16 15 14 18 18 C 1.31939 * 120.08705 * 359.97438 * 17 16 15 19 19 C 1.50701 * 120.05287 * 179.97438 * 18 17 16 20 20 H 1.08998 * 109.46926 * 178.83485 * 1 2 3 21 21 H 1.09001 * 109.47192 * 298.83816 * 1 2 3 22 22 H 1.08999 * 109.46624 * 58.84201 * 1 2 3 23 23 H 1.08997 * 109.47070 * 239.99523 * 2 1 3 24 24 H 1.08998 * 109.47038 * 119.99923 * 2 1 3 25 25 H 1.08992 * 109.47273 * 48.46890 * 4 3 2 26 26 H 1.08999 * 109.46745 * 168.47025 * 4 3 2 27 27 H 0.96999 * 119.99843 * 180.02562 * 8 7 5 28 28 H 1.08004 * 119.94315 * 179.72104 * 15 14 13 29 29 H 1.07996 * 119.90294 * 179.97438 * 16 15 14 30 30 H 1.08993 * 109.47274 * 271.08063 * 19 18 17 31 31 H 1.09001 * 109.47258 * 31.08276 * 19 18 17 32 32 H 1.09003 * 109.47406 * 151.08063 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4094 1.4520 0.4713 5 6 3.4507 1.1826 1.9535 6 1 2.5412 0.9429 2.4844 7 6 4.6496 1.2421 2.6318 8 7 5.7572 1.5336 1.9853 9 14 4.7010 0.9075 4.4688 10 1 3.3310 0.6047 4.9554 11 1 5.5891 -0.2522 4.7362 12 1 5.2235 2.1045 5.1757 13 6 1.8928 1.9582 -1.2600 14 7 2.4932 1.4053 -2.3060 15 6 2.3705 1.9539 -3.5027 16 6 1.6176 3.1014 -3.6654 17 7 1.0174 3.6559 -2.6256 18 6 1.1348 3.1148 -1.4280 19 6 0.4510 3.7476 -0.2435 20 1 -0.3633 -1.0274 -0.0209 21 1 -0.3633 0.4957 0.9002 22 1 -0.3632 0.5317 -0.8794 23 1 1.8934 -0.5139 -0.8899 24 1 1.8934 -0.5138 0.8900 25 1 4.0065 0.7044 -0.0506 26 1 3.8135 2.4443 0.2710 27 1 6.6007 1.5752 2.4625 28 1 2.8627 1.5068 -4.3538 29 1 1.5199 3.5469 -4.6442 30 1 1.1141 4.4860 0.2071 31 1 -0.4667 4.2357 -0.5718 32 1 0.2108 2.9788 0.4909 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214258128.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:45 Heat of formation + Delta-G solvation = 51.453401 kcal Electronic energy + Delta-G solvation = -15136.589595 eV Core-core repulsion = 12711.478762 eV Total energy + Delta-G solvation = -2425.110833 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.81743 -36.97321 -33.98430 -32.79227 -31.61956 -29.94251 -27.65184 -26.45039 -23.76658 -22.49526 -22.36380 -20.47074 -17.43627 -16.63400 -16.05636 -15.48288 -15.19640 -14.42477 -13.98719 -13.67857 -13.22178 -12.65407 -12.42489 -12.26170 -12.16838 -11.79809 -11.37481 -11.19185 -11.09298 -10.87756 -10.69379 -10.48091 -10.37693 -10.02219 -9.44447 -8.75936 -8.51214 -8.49101 -7.65135 -6.07755 -4.10347 1.17081 1.52471 3.28772 3.36250 3.40591 4.03276 4.22151 4.43370 4.55172 4.77594 5.01382 5.27966 5.34641 5.58439 5.68722 5.70939 5.87123 5.99408 6.08777 6.23840 6.24908 6.43267 6.56961 6.69991 6.76130 7.14109 7.29136 7.66302 7.74452 7.89571 8.03885 8.23096 8.43324 8.96379 9.53651 11.03019 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.034071 B = 0.008254 C = 0.007880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.608617 B = 3391.395034 C = 3552.252694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.057 3.943 3 N -0.483 5.483 4 C 0.204 3.796 5 C -0.509 4.509 6 H 0.068 0.932 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.901 3.099 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.284 1.284 13 C 0.276 3.724 14 N -0.468 5.468 15 C 0.049 3.951 16 C 0.024 3.976 17 N -0.443 5.443 18 C 0.101 3.899 19 C -0.088 4.088 20 H 0.052 0.948 21 H 0.062 0.938 22 H 0.038 0.962 23 H 0.038 0.962 24 H 0.092 0.908 25 H 0.006 0.994 26 H 0.027 0.973 27 H 0.262 0.738 28 H 0.159 0.841 29 H 0.162 0.838 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.910 0.737 -7.325 11.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.070 4.070 3 N -0.207 5.207 4 C 0.081 3.919 5 C -0.548 4.548 6 H 0.086 0.914 7 C -0.145 4.145 8 N -0.535 5.535 9 Si 0.728 3.272 10 H -0.195 1.195 11 H -0.211 1.211 12 H -0.210 1.210 13 C 0.044 3.956 14 N -0.185 5.185 15 C -0.112 4.112 16 C -0.134 4.134 17 N -0.159 5.159 18 C -0.043 4.043 19 C -0.146 4.146 20 H 0.071 0.929 21 H 0.081 0.919 22 H 0.057 0.943 23 H 0.057 0.943 24 H 0.110 0.890 25 H 0.024 0.976 26 H 0.045 0.955 27 H 0.071 0.929 28 H 0.176 0.824 29 H 0.179 0.821 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.985 1.012 -6.962 11.412 hybrid contribution 0.904 -0.585 0.180 1.092 sum -8.081 0.427 -6.782 10.559 Atomic orbital electron populations 1.21785 0.96318 1.00520 1.01480 1.22068 0.94302 0.88457 1.02212 1.60527 1.26911 1.18754 1.14537 1.19771 0.79299 0.97173 0.95695 1.21132 0.93907 1.47386 0.92345 0.91420 1.24996 0.95467 0.95322 0.98758 1.69984 0.98654 1.48781 1.36073 0.86400 0.78156 0.77804 0.84813 1.19523 1.21072 1.20994 1.21152 0.91386 0.92799 0.90298 1.68650 1.17645 1.32374 0.99877 1.23512 0.97515 0.94639 0.95547 1.23487 0.96424 0.95003 0.98522 1.68219 1.18591 1.30099 0.98978 1.22129 0.95614 0.92848 0.93701 1.20564 0.99120 1.01288 0.93624 0.92940 0.91880 0.94285 0.94333 0.88967 0.97622 0.95481 0.92861 0.82368 0.82091 0.90326 0.91625 0.88821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 10.03 37.16 0.37 -1.91 16 2 C 0.06 1.11 5.49 -3.82 -0.02 1.09 16 3 N -0.48 -10.48 3.32 -174.43 -0.58 -11.06 16 4 C 0.20 5.35 4.56 -4.97 -0.02 5.33 16 5 C -0.51 -13.96 8.37 -34.44 -0.29 -14.25 16 6 H 0.07 1.81 7.60 -52.48 -0.40 1.41 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -26.52 13.29 55.43 0.74 -25.79 16 9 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 10 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.28 5.61 4.56 -154.72 -0.71 4.90 16 14 N -0.47 -9.24 9.61 -12.24 -0.12 -9.36 16 15 C 0.05 0.75 11.22 -17.40 -0.20 0.56 16 16 C 0.02 0.35 11.21 -17.39 -0.19 0.16 16 17 N -0.44 -7.55 10.41 -9.12 -0.10 -7.64 16 18 C 0.10 1.85 6.81 -82.15 -0.56 1.29 16 19 C -0.09 -1.41 9.97 36.01 0.36 -1.05 16 20 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 21 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 22 H 0.04 0.62 7.70 -51.93 -0.40 0.22 16 23 H 0.04 0.77 7.40 -51.93 -0.38 0.39 16 24 H 0.09 1.91 6.97 -51.93 -0.36 1.55 16 25 H 0.01 0.17 8.06 -51.93 -0.42 -0.25 16 26 H 0.03 0.78 7.98 -51.93 -0.41 0.37 16 27 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 28 H 0.16 1.85 8.06 -52.48 -0.42 1.43 16 29 H 0.16 1.65 8.06 -52.49 -0.42 1.23 16 30 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.09 1.53 7.44 -51.93 -0.39 1.14 16 LS Contribution 275.30 15.07 4.15 4.15 Total: -1.00 -30.89 275.30 -6.72 -37.60 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: -4.43 Total: -1.75 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -1.35 Total: -2.40 kcal Atomic # 7 Polarization: -53.79 SS G_CDS: -0.06 Total: -53.85 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.89 -6.72 -37.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214258128.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.055 kcal (2) G-P(sol) polarization free energy of solvation -30.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds