Wall clock time and date at job start Mon Mar 30 2020 02:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46900 * 109.46873 * 2 1 4 4 C 1.46906 * 110.99605 * 159.90141 * 3 2 1 5 5 C 1.50703 * 109.46954 * 288.46943 * 4 3 2 6 6 H 1.08003 * 120.00194 * 2.43601 * 5 4 3 7 7 C 1.37874 * 119.99895 * 182.44133 * 5 4 3 8 8 N 1.31521 * 120.00060 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00231 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47103 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47662 * 119.99282 * 9 7 5 12 12 H 1.48504 * 109.47300 * 239.99981 * 9 7 5 13 13 C 1.39003 * 110.99941 * 283.85129 * 3 2 1 14 14 N 1.32680 * 120.09561 * 301.47808 * 13 3 2 15 15 C 1.32221 * 119.90954 * 180.02562 * 14 13 3 16 16 C 1.38200 * 120.10546 * 359.97438 * 15 14 13 17 17 N 1.32245 * 120.18959 * 0.02562 * 16 15 14 18 18 C 1.31939 * 120.08705 * 359.97438 * 17 16 15 19 19 C 1.50701 * 120.05287 * 179.97438 * 18 17 16 20 20 H 1.08998 * 109.46926 * 178.83485 * 1 2 3 21 21 H 1.09001 * 109.47192 * 298.83816 * 1 2 3 22 22 H 1.08999 * 109.46624 * 58.84201 * 1 2 3 23 23 H 1.08997 * 109.47070 * 239.99523 * 2 1 3 24 24 H 1.08998 * 109.47038 * 119.99923 * 2 1 3 25 25 H 1.08992 * 109.47273 * 48.46890 * 4 3 2 26 26 H 1.08999 * 109.46745 * 168.47025 * 4 3 2 27 27 H 0.96999 * 119.99843 * 180.02562 * 8 7 5 28 28 H 1.08004 * 119.94315 * 179.72104 * 15 14 13 29 29 H 1.07996 * 119.90294 * 179.97438 * 16 15 14 30 30 H 1.08993 * 109.47274 * 271.08063 * 19 18 17 31 31 H 1.09001 * 109.47258 * 31.08276 * 19 18 17 32 32 H 1.09003 * 109.47406 * 151.08063 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4094 1.4520 0.4713 5 6 3.4507 1.1826 1.9535 6 1 2.5412 0.9429 2.4844 7 6 4.6496 1.2421 2.6318 8 7 5.7572 1.5336 1.9853 9 14 4.7010 0.9075 4.4688 10 1 3.3310 0.6047 4.9554 11 1 5.5891 -0.2522 4.7362 12 1 5.2235 2.1045 5.1757 13 6 1.8928 1.9582 -1.2600 14 7 2.4932 1.4053 -2.3060 15 6 2.3705 1.9539 -3.5027 16 6 1.6176 3.1014 -3.6654 17 7 1.0174 3.6559 -2.6256 18 6 1.1348 3.1148 -1.4280 19 6 0.4510 3.7476 -0.2435 20 1 -0.3633 -1.0274 -0.0209 21 1 -0.3633 0.4957 0.9002 22 1 -0.3632 0.5317 -0.8794 23 1 1.8934 -0.5139 -0.8899 24 1 1.8934 -0.5138 0.8900 25 1 4.0065 0.7044 -0.0506 26 1 3.8135 2.4443 0.2710 27 1 6.6007 1.5752 2.4625 28 1 2.8627 1.5068 -4.3538 29 1 1.5199 3.5469 -4.6442 30 1 1.1141 4.4860 0.2071 31 1 -0.4667 4.2357 -0.5718 32 1 0.2108 2.9788 0.4909 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214258128.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:45 Heat of formation + Delta-G solvation = 30.763171 kcal Electronic energy + Delta-G solvation = -15137.486791 eV Core-core repulsion = 12711.478762 eV Total energy + Delta-G solvation = -2426.008029 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.19335 -38.58048 -35.36262 -34.85609 -32.99700 -31.58524 -29.17401 -28.14746 -25.31285 -24.34531 -23.67592 -22.07218 -18.96954 -18.42686 -17.67656 -17.02391 -16.70217 -16.18641 -15.32881 -15.20930 -14.85684 -14.35472 -14.10451 -13.69704 -13.59013 -13.08843 -12.96325 -12.77594 -12.72160 -12.53641 -12.44797 -12.12304 -11.90453 -11.84224 -11.44481 -10.66536 -10.20415 -9.85075 -9.36787 -8.22984 -6.34367 -0.15673 0.17089 1.42866 1.43282 1.57520 2.38457 2.70067 2.82531 3.10744 3.29523 3.44427 3.68691 4.10922 4.28400 4.30713 4.46217 4.49239 4.66648 4.81413 4.85802 4.96641 4.98156 5.04574 5.16379 5.19638 5.35111 5.48197 5.65511 5.98785 6.06801 6.32515 6.58797 6.79951 6.88977 7.35371 8.88963 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.034071 B = 0.008254 C = 0.007880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.608617 B = 3391.395034 C = 3552.252694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.057 3.943 3 N -0.478 5.478 4 C 0.228 3.772 5 C -0.520 4.520 6 H 0.074 0.926 7 C 0.000 4.000 8 N -0.937 5.937 9 Si 0.976 3.024 10 H -0.257 1.257 11 H -0.280 1.280 12 H -0.279 1.279 13 C 0.237 3.763 14 N -0.502 5.502 15 C 0.046 3.954 16 C 0.045 3.955 17 N -0.452 5.452 18 C 0.090 3.910 19 C -0.084 4.084 20 H 0.077 0.923 21 H 0.067 0.933 22 H 0.038 0.962 23 H 0.027 0.973 24 H 0.074 0.926 25 H -0.033 1.033 26 H -0.011 1.011 27 H 0.265 0.735 28 H 0.198 0.802 29 H 0.213 0.787 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.376 0.963 -7.839 13.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.070 4.070 3 N -0.202 5.202 4 C 0.103 3.897 5 C -0.558 4.558 6 H 0.092 0.908 7 C -0.198 4.198 8 N -0.577 5.577 9 Si 0.800 3.200 10 H -0.180 1.180 11 H -0.206 1.206 12 H -0.205 1.205 13 C 0.006 3.994 14 N -0.220 5.220 15 C -0.115 4.115 16 C -0.115 4.115 17 N -0.168 5.168 18 C -0.051 4.051 19 C -0.141 4.141 20 H 0.096 0.904 21 H 0.086 0.914 22 H 0.057 0.943 23 H 0.045 0.955 24 H 0.093 0.907 25 H -0.016 1.016 26 H 0.008 0.992 27 H 0.073 0.927 28 H 0.215 0.785 29 H 0.230 0.770 30 H 0.091 0.909 31 H 0.108 0.892 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.493 1.238 -7.453 12.930 hybrid contribution 1.373 -0.630 0.095 1.514 sum -9.119 0.608 -7.358 11.733 Atomic orbital electron populations 1.21655 0.92985 1.02240 1.01657 1.22091 0.96919 0.87284 1.00706 1.60382 1.23563 1.19820 1.16459 1.19244 0.81659 0.93547 0.95223 1.21435 0.94282 1.47115 0.92970 0.90831 1.25987 0.94922 0.94814 1.04030 1.70128 0.99399 1.49888 1.38281 0.85237 0.78774 0.77684 0.78340 1.18043 1.20564 1.20506 1.21131 0.93989 0.94342 0.89911 1.68543 1.18415 1.33707 1.01321 1.24231 0.97271 0.94952 0.95081 1.24333 0.93603 0.93805 0.99738 1.68338 1.19204 1.30221 0.98998 1.22310 0.95629 0.92183 0.94978 1.20553 0.99834 1.00886 0.92871 0.90383 0.91397 0.94296 0.95493 0.90743 1.01558 0.99241 0.92668 0.78502 0.77023 0.90943 0.89157 0.89555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.94 10.03 71.98 0.72 -3.22 16 2 C 0.06 2.29 5.49 86.30 0.47 2.76 16 3 N -0.48 -21.49 3.32 -705.76 -2.34 -23.84 16 4 C 0.23 12.64 4.56 85.56 0.39 13.03 16 5 C -0.52 -29.35 8.37 25.60 0.21 -29.13 16 6 H 0.07 3.98 7.60 -2.91 -0.02 3.95 16 7 C 0.00 0.03 5.46 84.65 0.46 0.49 16 8 N -0.94 -57.18 13.29 21.45 0.28 -56.89 16 9 Si 0.98 43.94 29.54 68.60 2.03 45.96 16 10 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 11 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 12 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 13 C 0.24 9.78 4.56 133.02 0.61 10.39 16 14 N -0.50 -19.91 9.61 -192.64 -1.85 -21.76 16 15 C 0.05 1.33 11.22 84.63 0.95 2.28 16 16 C 0.05 1.15 11.21 84.62 0.95 2.10 16 17 N -0.45 -14.43 10.41 -182.78 -1.90 -16.33 16 18 C 0.09 3.27 6.81 42.80 0.29 3.56 16 19 C -0.08 -2.64 9.97 71.24 0.71 -1.93 16 20 H 0.08 1.99 8.14 -2.39 -0.02 1.98 16 21 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 22 H 0.04 1.19 7.70 -2.39 -0.02 1.17 16 23 H 0.03 1.12 7.40 -2.39 -0.02 1.10 16 24 H 0.07 3.19 6.97 -2.39 -0.02 3.17 16 25 H -0.03 -2.06 8.06 -2.39 -0.02 -2.08 16 26 H -0.01 -0.65 7.98 -2.39 -0.02 -0.67 16 27 H 0.26 15.12 8.31 -92.71 -0.77 14.34 16 28 H 0.20 3.95 8.06 -2.91 -0.02 3.93 16 29 H 0.21 3.18 8.06 -2.91 -0.02 3.16 16 30 H 0.07 2.34 8.14 -2.39 -0.02 2.33 16 31 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.09 2.81 7.44 -2.39 -0.02 2.80 16 Total: -1.00 -69.53 275.30 3.08 -66.45 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: 1.09 Total: 6.07 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: 5.77 Total: 0.34 kcal Atomic # 7 Polarization: -113.01 SS G_CDS: -5.81 Total: -118.83 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Total: -69.53 3.08 -66.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214258128.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.214 kcal (2) G-P(sol) polarization free energy of solvation -69.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds