Wall clock time and date at job start Mon Mar 30 2020 02:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.47125 * 110.99967 * 2 1 4 4 C 1.50946 * 111.65710 * 204.20501 * 3 2 1 5 5 C 1.51311 * 115.67502 * 288.48459 * 4 3 2 6 6 C 1.53564 * 110.70878 * 70.48973 * 5 4 3 7 7 N 1.47797 * 107.03929 * 281.83441 * 6 5 4 8 8 C 1.35763 * 127.09782 * 245.17315 * 7 6 5 9 9 C 1.39378 * 106.13376 * 180.47034 * 8 7 6 10 10 C 1.41106 * 126.35338 * 179.78538 * 9 8 7 11 11 H 1.08003 * 119.99426 * 359.97438 * 10 9 8 12 12 C 1.39632 * 120.00303 * 180.02562 * 10 9 8 13 13 N 1.31070 * 119.99776 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00173 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.46755 * 59.99697 * 14 12 10 16 16 H 1.48490 * 109.47029 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.46823 * 300.00170 * 14 12 10 18 18 N 1.36231 * 107.29606 * 359.80447 * 9 8 7 19 19 C 1.30948 * 108.95018 * 359.86532 * 18 9 8 20 20 H 1.09006 * 109.46887 * 59.99969 * 1 2 3 21 21 H 1.08990 * 109.47490 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47394 * 300.00387 * 1 2 3 23 23 H 1.08996 * 109.04587 * 83.63816 * 3 2 1 24 24 H 1.08996 * 108.98234 * 324.72341 * 3 2 1 25 25 H 1.09004 * 108.24410 * 166.88022 * 4 3 2 26 26 H 1.08997 * 108.24707 * 50.09282 * 4 3 2 27 27 H 1.08995 * 109.23093 * 310.16987 * 5 4 3 28 28 H 1.09001 * 109.22860 * 190.80529 * 5 4 3 29 29 H 1.09002 * 109.95594 * 41.24531 * 6 5 4 30 30 H 1.09001 * 109.95320 * 162.42687 * 6 5 4 31 31 H 1.07994 * 126.90329 * 0.44673 * 8 7 6 32 32 H 0.96998 * 119.99662 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9963 1.3735 0.0000 4 6 3.3905 1.4351 -0.5752 5 6 4.4829 0.8444 0.2892 6 6 4.3614 -0.6853 0.3482 7 7 3.2755 -0.9970 1.3011 8 6 3.3904 -1.6375 2.4926 9 6 2.1026 -1.7062 3.0212 10 6 1.7330 -2.2931 4.2500 11 1 2.4844 -2.7471 4.8792 12 6 0.3959 -2.2879 4.6522 13 7 -0.5160 -1.7374 3.8884 14 14 -0.0934 -3.0655 6.2786 15 1 0.6176 -2.3810 7.3882 16 1 -1.5593 -2.9285 6.4716 17 1 0.2728 -4.5046 6.2692 18 7 1.2667 -1.1021 2.1311 19 6 1.9681 -0.6759 1.1108 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0275 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 2.0172 1.7465 1.0239 24 1 1.3378 2.0061 -0.5952 25 1 3.6347 2.4799 -0.7670 26 1 3.3893 0.9093 -1.5300 27 1 4.4017 1.2502 1.2976 28 1 5.4542 1.1116 -0.1273 29 1 4.1144 -1.0771 -0.6385 30 1 5.2984 -1.1197 0.6968 31 1 4.2971 -2.0172 2.9399 32 1 -1.4449 -1.7341 4.1675 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214605952.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:52 Heat of formation + Delta-G solvation = 50.360265 kcal Electronic energy + Delta-G solvation = -15475.877069 eV Core-core repulsion = 13050.718834 eV Total energy + Delta-G solvation = -2425.158235 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.17978 -38.30691 -36.25428 -35.03336 -32.39921 -30.03104 -29.47047 -27.45165 -25.10041 -24.87428 -21.72941 -21.45850 -20.11362 -18.83845 -17.74927 -16.65894 -16.42025 -15.72209 -15.48592 -15.30606 -14.90098 -14.47541 -14.24169 -13.99783 -13.41608 -12.98596 -12.82097 -12.73805 -12.64193 -12.37510 -11.98049 -11.84024 -11.78120 -11.68339 -11.05609 -10.31765 -9.91809 -9.71795 -8.54508 -8.19182 -6.03759 1.37105 1.41043 1.53515 1.70631 2.19945 2.35940 2.60947 3.16160 3.74290 3.78955 3.95499 4.08193 4.18698 4.37785 4.47158 4.52915 4.62818 4.74726 4.79931 4.93246 4.97500 5.05453 5.11741 5.16961 5.34669 5.48218 5.54445 5.89577 6.01120 6.16994 6.47210 7.01306 7.17911 7.38114 8.10944 8.76294 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.042963 B = 0.009012 C = 0.007813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.572742 B = 3106.305137 C = 3582.776560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.450 5.450 3 C 0.050 3.950 4 C -0.113 4.113 5 C -0.127 4.127 6 C 0.108 3.892 7 N -0.455 5.455 8 C -0.227 4.227 9 C 0.153 3.847 10 C -0.493 4.493 11 H 0.076 0.924 12 C 0.024 3.976 13 N -0.816 5.816 14 Si 0.981 3.019 15 H -0.263 1.263 16 H -0.275 1.275 17 H -0.263 1.263 18 N -0.520 5.520 19 C 0.318 3.682 20 H 0.107 0.893 21 H 0.047 0.953 22 H 0.016 0.984 23 H 0.008 0.992 24 H 0.107 0.893 25 H 0.097 0.903 26 H 0.081 0.919 27 H 0.040 0.960 28 H 0.115 0.885 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.162 0.838 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.485 6.269 -8.806 12.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.174 5.174 3 C -0.077 4.077 4 C -0.151 4.151 5 C -0.165 4.165 6 C -0.014 4.014 7 N -0.146 5.146 8 C -0.355 4.355 9 C 0.027 3.973 10 C -0.528 4.528 11 H 0.094 0.906 12 C -0.190 4.190 13 N -0.443 5.443 14 Si 0.803 3.197 15 H -0.188 1.188 16 H -0.200 1.200 17 H -0.187 1.187 18 N -0.248 5.248 19 C -0.033 4.033 20 H 0.126 0.874 21 H 0.066 0.934 22 H 0.035 0.965 23 H 0.026 0.974 24 H 0.125 0.875 25 H 0.116 0.884 26 H 0.100 0.900 27 H 0.059 0.941 28 H 0.133 0.867 29 H 0.105 0.895 30 H 0.116 0.884 31 H 0.180 0.820 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.719 6.202 -9.296 12.554 hybrid contribution 0.161 -0.306 1.589 1.626 sum 5.880 5.897 -7.707 11.347 Atomic orbital electron populations 1.22044 0.84013 1.01953 1.00808 1.59931 1.10210 1.14451 1.32789 1.22042 0.98876 0.87361 0.99406 1.20862 0.91492 1.03016 0.99685 1.21718 1.01212 0.93370 1.00245 1.22409 0.89203 0.97265 0.92523 1.44809 1.06946 1.45929 1.16915 1.22469 0.99523 1.20801 0.92668 1.18930 0.87927 0.96280 0.94161 1.18749 0.94123 1.36896 1.03064 0.90632 1.26676 0.96172 0.94686 1.01473 1.70273 1.01458 1.35716 1.36893 0.85301 0.77324 0.79229 0.77847 1.18754 1.19995 1.18714 1.71545 1.31517 1.19908 1.01829 1.21984 0.82387 1.04835 0.94045 0.87442 0.93396 0.96498 0.97387 0.87480 0.88448 0.90015 0.94148 0.86655 0.89457 0.88375 0.82034 0.92399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.30 8.83 127.69 1.13 3.43 16 2 N -0.45 -17.81 4.88 -734.22 -3.58 -21.39 16 3 C 0.05 1.57 5.25 85.59 0.45 2.02 16 4 C -0.11 -2.63 5.32 29.37 0.16 -2.48 16 5 C -0.13 -3.21 5.75 30.23 0.17 -3.04 16 6 C 0.11 3.34 6.62 86.32 0.57 3.91 16 7 N -0.45 -20.61 2.78 -518.18 -1.44 -22.05 16 8 C -0.23 -11.80 11.70 84.36 0.99 -10.81 16 9 C 0.15 9.32 6.69 39.44 0.26 9.58 16 10 C -0.49 -30.08 9.37 23.31 0.22 -29.86 16 11 H 0.08 4.34 7.84 -2.91 -0.02 4.32 16 12 C 0.02 1.37 5.49 85.14 0.47 1.83 16 13 N -0.82 -49.89 11.93 21.78 0.26 -49.63 16 14 Si 0.98 43.67 29.56 68.60 2.03 45.70 16 15 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 16 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 17 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 18 N -0.52 -31.23 8.63 -189.23 -1.63 -32.86 16 19 C 0.32 15.86 6.59 260.11 1.72 17.58 16 20 H 0.11 3.00 8.05 -2.38 -0.02 2.98 16 21 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 22 H 0.02 0.72 8.05 -2.39 -0.02 0.70 16 23 H 0.01 0.29 7.81 -2.39 -0.02 0.27 16 24 H 0.11 2.61 7.78 -2.39 -0.02 2.59 16 25 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 26 H 0.08 1.73 7.96 -2.39 -0.02 1.72 16 27 H 0.04 1.25 8.10 -2.39 -0.02 1.23 16 28 H 0.12 1.95 8.14 -2.39 -0.02 1.94 16 29 H 0.09 2.52 7.93 -2.39 -0.02 2.50 16 30 H 0.10 2.63 8.12 -2.39 -0.02 2.61 16 31 H 0.16 7.52 8.06 -2.91 -0.02 7.50 16 32 H 0.27 15.03 8.30 -92.71 -0.77 14.26 16 Total: -1.00 -76.69 263.14 2.86 -73.83 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: 1.09 Total: 14.25 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: 6.13 Total: -7.84 kcal Atomic # 7 Polarization: -119.54 SS G_CDS: -6.39 Total: -125.93 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -76.69 2.86 -73.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214605952.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.191 kcal (2) G-P(sol) polarization free energy of solvation -76.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds