Wall clock time and date at job start Mon Mar 30 2020 02:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47238 * 111.00199 * 2 1 4 4 C 1.50951 * 111.54081 * 203.73902 * 3 2 1 5 5 C 1.51242 * 115.78706 * 288.47928 * 4 3 2 6 6 C 1.53548 * 110.80760 * 70.77303 * 5 4 3 7 7 N 1.47839 * 106.95739 * 281.66681 * 6 5 4 8 8 N 1.39597 * 126.91431 * 245.19152 * 7 6 5 9 9 C 1.33212 * 107.74671 * 180.36934 * 8 7 6 10 10 C 1.41407 * 126.05191 * 179.78939 * 9 8 7 11 11 H 1.08002 * 120.00179 * 179.69726 * 10 9 8 12 12 C 1.39817 * 120.00020 * 359.41452 * 10 9 8 13 13 N 1.30914 * 119.99825 * 0.27906 * 12 10 9 14 14 Si 1.86794 * 119.99794 * 180.27340 * 12 10 9 15 15 H 1.48501 * 109.47188 * 90.00762 * 14 12 10 16 16 H 1.48501 * 109.47085 * 210.00341 * 14 12 10 17 17 H 1.48498 * 109.47634 * 330.00577 * 14 12 10 18 18 C 1.41894 * 107.88931 * 359.53255 * 9 8 7 19 19 C 1.35186 * 107.55104 * 0.23359 * 18 9 8 20 20 H 1.08994 * 109.46939 * 294.86429 * 1 2 3 21 21 H 1.08995 * 109.46733 * 54.86979 * 1 2 3 22 22 H 1.09008 * 109.46798 * 174.86291 * 1 2 3 23 23 H 1.09010 * 109.06311 * 83.21254 * 3 2 1 24 24 H 1.08996 * 109.06525 * 324.27652 * 3 2 1 25 25 H 1.08998 * 108.21851 * 166.83279 * 4 3 2 26 26 H 1.09002 * 108.05995 * 49.99163 * 4 3 2 27 27 H 1.09004 * 109.21187 * 310.42744 * 5 4 3 28 28 H 1.09000 * 109.21281 * 191.11520 * 5 4 3 29 29 H 1.09006 * 109.95556 * 162.30631 * 6 5 4 30 30 H 1.08997 * 109.96019 * 41.02945 * 6 5 4 31 31 H 0.97005 * 119.99734 * 179.97438 * 13 12 10 32 32 H 1.08001 * 126.22418 * 180.21775 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9967 1.3746 0.0000 4 6 3.3952 1.4313 -0.5652 5 6 4.4818 0.8429 0.3069 6 6 4.3647 -0.6869 0.3665 7 7 3.2749 -0.9994 1.3154 8 7 3.3935 -1.6557 2.5417 9 6 2.1762 -1.7410 3.0759 10 6 1.8514 -2.3390 4.3155 11 1 0.8273 -2.3492 4.6583 12 6 2.8552 -2.9222 5.0947 13 7 4.0966 -2.9099 4.6792 14 14 2.4250 -3.7188 6.7286 15 1 2.1055 -5.1527 6.5113 16 1 3.5802 -3.6040 7.6546 17 1 1.2474 -3.0332 7.3188 18 6 1.2641 -1.1203 2.1836 19 6 1.9715 -0.6779 1.1200 20 1 -0.3633 0.4321 0.9324 21 1 -0.3632 0.5913 -0.8404 22 1 -0.3633 -1.0236 -0.0920 23 1 2.0106 1.7506 1.0231 24 1 1.3435 2.0067 -0.6015 25 1 3.6421 2.4750 -0.7597 26 1 3.3969 0.8998 -1.5169 27 1 4.3922 1.2490 1.3145 28 1 5.4554 1.1124 -0.1023 29 1 5.3012 -1.1182 0.7203 30 1 4.1225 -1.0803 -0.6208 31 1 4.7931 -3.3142 5.2199 32 1 0.1985 -1.0199 2.3278 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214606029.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:50 Heat of formation + Delta-G solvation = 79.723541 kcal Electronic energy + Delta-G solvation = -15359.711791 eV Core-core repulsion = 12935.826843 eV Total energy + Delta-G solvation = -2423.884948 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.88329 -36.60234 -34.62259 -33.12813 -30.42977 -28.11271 -27.40851 -26.05711 -23.93182 -23.11173 -20.30375 -19.44042 -18.28390 -17.00140 -15.79418 -15.19910 -14.68062 -14.05653 -13.74319 -13.64104 -13.44198 -12.89938 -12.48914 -12.18195 -11.89831 -11.67172 -11.25017 -11.02964 -10.91719 -10.71145 -10.57284 -10.45212 -10.30324 -9.88349 -9.18611 -8.59207 -8.32113 -7.36687 -6.75827 -6.26288 -4.18549 3.18033 3.26431 3.30448 3.37315 3.84956 4.22000 4.42967 4.54240 4.99395 5.18239 5.31078 5.51614 5.66591 5.73517 5.78782 5.79947 5.93187 6.03064 6.13620 6.15610 6.19593 6.26773 6.54469 6.76404 6.86988 7.08179 7.32250 7.49499 7.74737 7.94873 8.51155 8.78806 9.06858 9.30251 10.04705 10.71053 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.043214 B = 0.008540 C = 0.007436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.779537 B = 3277.946923 C = 3764.517177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.476 5.476 3 C 0.054 3.946 4 C -0.114 4.114 5 C -0.137 4.137 6 C 0.151 3.849 7 N -0.407 5.407 8 N -0.313 5.313 9 C 0.215 3.785 10 C -0.446 4.446 11 H 0.078 0.922 12 C 0.071 3.929 13 N -0.778 5.778 14 Si 0.906 3.094 15 H -0.274 1.274 16 H -0.281 1.281 17 H -0.266 1.266 18 C -0.335 4.335 19 C 0.223 3.777 20 H 0.037 0.963 21 H 0.065 0.935 22 H 0.073 0.927 23 H 0.041 0.959 24 H 0.072 0.928 25 H 0.061 0.939 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.269 0.731 32 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.003 6.952 -8.154 10.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.197 5.197 3 C -0.073 4.073 4 C -0.152 4.152 5 C -0.175 4.175 6 C 0.028 3.972 7 N -0.190 5.190 8 N -0.142 5.142 9 C 0.062 3.938 10 C -0.486 4.486 11 H 0.096 0.904 12 C -0.147 4.147 13 N -0.406 5.406 14 Si 0.731 3.269 15 H -0.199 1.199 16 H -0.207 1.207 17 H -0.190 1.190 18 C -0.369 4.369 19 C 0.003 3.997 20 H 0.055 0.945 21 H 0.084 0.916 22 H 0.092 0.908 23 H 0.060 0.940 24 H 0.090 0.910 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.105 0.895 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.279 6.453 -8.580 10.739 hybrid contribution -1.331 0.188 1.262 1.844 sum -1.609 6.640 -7.318 10.012 Atomic orbital electron populations 1.22327 0.85586 1.02795 1.00400 1.59866 1.08699 1.13237 1.37946 1.21837 0.96229 0.88874 1.00358 1.20816 0.93856 1.00580 0.99905 1.21772 0.98374 0.96345 1.01036 1.21604 0.90356 0.93908 0.91334 1.49201 1.02754 1.48750 1.18329 1.79043 1.18943 1.24539 0.91660 1.19356 0.88581 0.92583 0.93326 1.18587 0.94820 1.34293 1.00895 0.90431 1.25790 0.94686 0.95311 0.98930 1.69964 1.00327 1.34443 1.35906 0.86371 0.78671 0.79833 0.82001 1.19911 1.20680 1.19002 1.21045 0.99046 1.19195 0.97628 1.19236 0.87513 1.01849 0.91058 0.94473 0.91634 0.90841 0.94041 0.90999 0.91999 0.91578 0.91393 0.90960 0.89541 0.91341 0.92073 0.86600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.57 8.64 60.06 0.52 1.09 16 2 N -0.48 -8.71 4.91 -181.87 -0.89 -9.61 16 3 C 0.05 0.84 5.26 -4.67 -0.02 0.82 16 4 C -0.11 -1.57 5.31 -28.65 -0.15 -1.73 16 5 C -0.14 -2.15 5.74 -27.33 -0.16 -2.30 16 6 C 0.15 2.89 6.92 -3.02 -0.02 2.87 16 7 N -0.41 -10.00 3.69 -59.10 -0.22 -10.22 16 8 N -0.31 -9.22 10.88 32.34 0.35 -8.86 16 9 C 0.21 6.32 6.76 -84.66 -0.57 5.75 16 10 C -0.45 -12.99 9.39 -37.79 -0.35 -13.34 16 11 H 0.08 2.12 7.84 -52.49 -0.41 1.71 16 12 C 0.07 1.99 5.49 -17.35 -0.10 1.90 16 13 N -0.78 -22.75 11.93 55.54 0.66 -22.09 16 14 Si 0.91 20.43 29.56 -169.99 -5.02 15.41 16 15 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 16 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 17 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 18 C -0.34 -8.60 9.65 -39.27 -0.38 -8.97 16 19 C 0.22 5.16 5.87 -152.37 -0.89 4.27 16 20 H 0.04 0.58 7.25 -51.93 -0.38 0.20 16 21 H 0.06 0.79 7.92 -51.93 -0.41 0.38 16 22 H 0.07 1.15 8.14 -51.92 -0.42 0.72 16 23 H 0.04 0.73 7.82 -51.92 -0.41 0.32 16 24 H 0.07 0.90 7.71 -51.93 -0.40 0.50 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.07 0.88 7.95 -51.93 -0.41 0.47 16 27 H 0.07 1.24 8.10 -51.93 -0.42 0.82 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 30 H 0.07 1.20 7.92 -51.93 -0.41 0.79 16 31 H 0.27 7.21 8.30 -40.82 -0.34 6.87 16 32 H 0.12 2.72 7.10 -52.49 -0.37 2.35 16 LS Contribution 261.81 15.07 3.95 3.95 Total: -1.00 -33.13 261.81 -7.76 -40.89 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -4.45 Total: 0.20 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: -2.13 Total: -9.66 kcal Atomic # 7 Polarization: -50.68 SS G_CDS: -0.10 Total: -50.78 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -33.13 -7.76 -40.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214606029.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.612 kcal (2) G-P(sol) polarization free energy of solvation -33.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds