Wall clock time and date at job start Mon Mar 30 2020 02:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47238 * 111.00199 * 2 1 4 4 C 1.50951 * 111.54081 * 203.73902 * 3 2 1 5 5 C 1.51242 * 115.78706 * 288.47928 * 4 3 2 6 6 C 1.53548 * 110.80760 * 70.77303 * 5 4 3 7 7 N 1.47839 * 106.95739 * 281.66681 * 6 5 4 8 8 N 1.39597 * 126.91431 * 245.19152 * 7 6 5 9 9 C 1.33212 * 107.74671 * 180.36934 * 8 7 6 10 10 C 1.41407 * 126.05191 * 179.78939 * 9 8 7 11 11 H 1.08002 * 120.00179 * 179.69726 * 10 9 8 12 12 C 1.39817 * 120.00020 * 359.41452 * 10 9 8 13 13 N 1.30914 * 119.99825 * 0.27906 * 12 10 9 14 14 Si 1.86794 * 119.99794 * 180.27340 * 12 10 9 15 15 H 1.48501 * 109.47188 * 90.00762 * 14 12 10 16 16 H 1.48501 * 109.47085 * 210.00341 * 14 12 10 17 17 H 1.48498 * 109.47634 * 330.00577 * 14 12 10 18 18 C 1.41894 * 107.88931 * 359.53255 * 9 8 7 19 19 C 1.35186 * 107.55104 * 0.23359 * 18 9 8 20 20 H 1.08994 * 109.46939 * 294.86429 * 1 2 3 21 21 H 1.08995 * 109.46733 * 54.86979 * 1 2 3 22 22 H 1.09008 * 109.46798 * 174.86291 * 1 2 3 23 23 H 1.09010 * 109.06311 * 83.21254 * 3 2 1 24 24 H 1.08996 * 109.06525 * 324.27652 * 3 2 1 25 25 H 1.08998 * 108.21851 * 166.83279 * 4 3 2 26 26 H 1.09002 * 108.05995 * 49.99163 * 4 3 2 27 27 H 1.09004 * 109.21187 * 310.42744 * 5 4 3 28 28 H 1.09000 * 109.21281 * 191.11520 * 5 4 3 29 29 H 1.09006 * 109.95556 * 162.30631 * 6 5 4 30 30 H 1.08997 * 109.96019 * 41.02945 * 6 5 4 31 31 H 0.97005 * 119.99734 * 179.97438 * 13 12 10 32 32 H 1.08001 * 126.22418 * 180.21775 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9967 1.3746 0.0000 4 6 3.3952 1.4313 -0.5652 5 6 4.4818 0.8429 0.3069 6 6 4.3647 -0.6869 0.3665 7 7 3.2749 -0.9994 1.3154 8 7 3.3935 -1.6557 2.5417 9 6 2.1762 -1.7410 3.0759 10 6 1.8514 -2.3390 4.3155 11 1 0.8273 -2.3492 4.6583 12 6 2.8552 -2.9222 5.0947 13 7 4.0966 -2.9099 4.6792 14 14 2.4250 -3.7188 6.7286 15 1 2.1055 -5.1527 6.5113 16 1 3.5802 -3.6040 7.6546 17 1 1.2474 -3.0332 7.3188 18 6 1.2641 -1.1203 2.1836 19 6 1.9715 -0.6779 1.1200 20 1 -0.3633 0.4321 0.9324 21 1 -0.3632 0.5913 -0.8404 22 1 -0.3633 -1.0236 -0.0920 23 1 2.0106 1.7506 1.0231 24 1 1.3435 2.0067 -0.6015 25 1 3.6421 2.4750 -0.7597 26 1 3.3969 0.8998 -1.5169 27 1 4.3922 1.2490 1.3145 28 1 5.4554 1.1124 -0.1023 29 1 5.3012 -1.1182 0.7203 30 1 4.1225 -1.0803 -0.6208 31 1 4.7931 -3.3142 5.2199 32 1 0.1985 -1.0199 2.3278 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214606029.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:50 Heat of formation + Delta-G solvation = 56.760618 kcal Electronic energy + Delta-G solvation = -15360.707538 eV Core-core repulsion = 12935.826843 eV Total energy + Delta-G solvation = -2424.880695 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.64650 -38.19394 -36.07639 -35.13728 -32.16464 -29.71930 -29.19356 -27.88185 -25.47893 -24.70891 -21.70164 -21.35065 -20.06501 -18.69348 -17.70686 -16.70477 -16.43362 -15.44474 -15.35867 -15.29532 -14.90675 -14.44827 -14.20455 -13.68205 -13.40929 -13.14993 -12.96374 -12.74507 -12.62668 -12.40230 -11.96033 -11.86404 -11.77754 -11.67488 -11.10920 -10.40294 -10.22387 -9.33549 -8.64100 -8.33896 -6.36374 1.38969 1.41132 1.56367 1.57591 2.16624 2.32469 2.38849 3.06211 3.61092 3.77186 3.94306 4.07261 4.14973 4.40830 4.44120 4.52214 4.66064 4.73164 4.91329 4.95060 4.95468 5.00310 5.04008 5.18127 5.29383 5.34119 5.38635 5.68723 5.95229 6.07142 6.44044 6.89794 7.02210 7.18227 7.99068 8.65246 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.043214 B = 0.008540 C = 0.007436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.779537 B = 3277.946923 C = 3764.517177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.475 5.475 3 C 0.050 3.950 4 C -0.114 4.114 5 C -0.128 4.128 6 C 0.138 3.862 7 N -0.414 5.414 8 N -0.361 5.361 9 C 0.181 3.819 10 C -0.484 4.484 11 H 0.081 0.919 12 C 0.021 3.979 13 N -0.819 5.819 14 Si 0.990 3.010 15 H -0.265 1.265 16 H -0.272 1.272 17 H -0.256 1.256 18 C -0.374 4.374 19 C 0.246 3.754 20 H 0.030 0.970 21 H 0.110 0.890 22 H 0.064 0.936 23 H 0.015 0.985 24 H 0.114 0.886 25 H 0.098 0.902 26 H 0.080 0.920 27 H 0.035 0.965 28 H 0.110 0.890 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.274 0.726 32 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.452 8.171 -9.554 12.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.197 5.197 3 C -0.076 4.076 4 C -0.151 4.151 5 C -0.166 4.166 6 C 0.017 3.983 7 N -0.198 5.198 8 N -0.191 5.191 9 C 0.027 3.973 10 C -0.523 4.523 11 H 0.099 0.901 12 C -0.194 4.194 13 N -0.448 5.448 14 Si 0.811 3.189 15 H -0.190 1.190 16 H -0.197 1.197 17 H -0.180 1.180 18 C -0.407 4.407 19 C 0.025 3.975 20 H 0.049 0.951 21 H 0.128 0.872 22 H 0.083 0.917 23 H 0.033 0.967 24 H 0.132 0.868 25 H 0.117 0.883 26 H 0.099 0.901 27 H 0.054 0.946 28 H 0.128 0.872 29 H 0.095 0.905 30 H 0.106 0.894 31 H 0.084 0.916 32 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.726 7.691 -10.008 12.643 hybrid contribution -1.173 -0.111 1.513 1.918 sum -1.900 7.580 -8.495 11.543 Atomic orbital electron populations 1.22483 0.83712 1.03230 1.01961 1.60015 1.10415 1.14643 1.34600 1.22050 0.98365 0.87261 0.99898 1.20859 0.91895 1.02901 0.99466 1.21733 1.01531 0.93212 1.00120 1.22060 0.88613 0.96821 0.90830 1.49485 1.04626 1.47866 1.17816 1.78854 1.19787 1.26293 0.94138 1.19829 0.89682 0.93418 0.94359 1.19001 0.95554 1.35803 1.01975 0.90108 1.26820 0.94158 0.95323 1.03095 1.70104 1.01569 1.35376 1.37774 0.85097 0.78772 0.78727 0.76294 1.18964 1.19688 1.17981 1.21183 0.99572 1.21373 0.98602 1.19515 0.86683 0.99961 0.91371 0.95100 0.87187 0.91702 0.96684 0.86753 0.88318 0.90089 0.94598 0.87169 0.90455 0.89385 0.91639 0.85654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.95 8.64 127.69 1.10 2.06 16 2 N -0.47 -16.39 4.91 -729.31 -3.58 -19.97 16 3 C 0.05 1.40 5.26 85.57 0.45 1.85 16 4 C -0.11 -2.69 5.31 29.35 0.16 -2.53 16 5 C -0.13 -3.75 5.74 30.20 0.17 -3.57 16 6 C 0.14 5.20 6.92 86.31 0.60 5.80 16 7 N -0.41 -20.75 3.69 -340.88 -1.26 -22.01 16 8 N -0.36 -22.22 10.88 -51.60 -0.56 -22.79 16 9 C 0.18 11.14 6.76 40.62 0.27 11.41 16 10 C -0.48 -29.43 9.39 23.43 0.22 -29.21 16 11 H 0.08 4.62 7.84 -2.91 -0.02 4.60 16 12 C 0.02 1.19 5.49 85.21 0.47 1.65 16 13 N -0.82 -49.72 11.93 21.81 0.26 -49.46 16 14 Si 0.99 42.86 29.56 68.60 2.03 44.89 16 15 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 16 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 17 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 18 C -0.37 -19.87 9.65 22.47 0.22 -19.66 16 19 C 0.25 11.48 5.87 130.72 0.77 12.25 16 20 H 0.03 0.92 7.25 -2.39 -0.02 0.90 16 21 H 0.11 2.15 7.92 -2.39 -0.02 2.13 16 22 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 23 H 0.01 0.50 7.82 -2.38 -0.02 0.48 16 24 H 0.11 2.26 7.71 -2.39 -0.02 2.25 16 25 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.08 1.75 7.95 -2.39 -0.02 1.73 16 27 H 0.04 1.28 8.10 -2.38 -0.02 1.27 16 28 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.08 2.99 8.14 -2.38 -0.02 2.97 16 30 H 0.09 2.95 7.92 -2.39 -0.02 2.93 16 31 H 0.27 15.16 8.30 -92.70 -0.77 14.39 16 32 H 0.13 6.12 7.10 -2.91 -0.02 6.10 16 Total: -1.00 -76.65 261.81 2.41 -74.24 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: 1.10 Total: 15.05 kcal Atomic # 6 Polarization: -24.37 SS G_CDS: 4.43 Total: -19.94 kcal Atomic # 7 Polarization: -109.09 SS G_CDS: -5.14 Total: -114.23 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -76.65 2.41 -74.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214606029.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.001 kcal (2) G-P(sol) polarization free energy of solvation -76.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds