Wall clock time and date at job start Mon Mar 30 2020 03:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.39039 * 119.99924 * 2 1 4 4 C 1.38830 * 119.66333 * 0.02562 * 3 2 1 5 5 C 1.39123 * 119.00263 * 180.23083 * 4 3 2 6 6 N 1.39199 * 120.82007 * 179.73998 * 5 4 3 7 7 C 1.46498 * 120.00262 * 0.02562 * 6 5 4 8 8 C 1.46501 * 119.99606 * 179.97438 * 6 5 4 9 9 C 1.50704 * 109.46996 * 90.00872 * 8 6 5 10 10 H 1.08000 * 119.99663 * 359.97438 * 9 8 6 11 11 C 1.37873 * 119.99975 * 180.02562 * 9 8 6 12 12 N 1.31522 * 119.99820 * 179.97438 * 11 9 8 13 13 Si 1.86798 * 120.00214 * 359.97438 * 11 9 8 14 14 H 1.48505 * 109.46719 * 90.00767 * 13 11 9 15 15 H 1.48502 * 109.47348 * 210.00489 * 13 11 9 16 16 H 1.48499 * 109.47228 * 330.00846 * 13 11 9 17 17 C 1.39695 * 118.35170 * 359.51032 * 5 4 3 18 18 C 1.37726 * 119.23439 * 0.48734 * 17 5 4 19 19 N 1.32085 * 120.93714 * 359.75342 * 18 17 5 20 20 H 1.08995 * 109.47216 * 299.99912 * 1 2 3 21 21 H 1.08994 * 109.47004 * 60.00095 * 1 2 3 22 22 H 1.09003 * 109.46510 * 179.97438 * 1 2 3 23 23 H 0.96999 * 120.00527 * 179.97438 * 2 1 3 24 24 H 1.08002 * 120.49583 * 359.95016 * 4 3 2 25 25 H 1.09002 * 109.47370 * 89.99782 * 7 6 5 26 26 H 1.09000 * 109.46721 * 209.99524 * 7 6 5 27 27 H 1.09004 * 109.46957 * 329.99182 * 7 6 5 28 28 H 1.08998 * 109.47135 * 210.00126 * 8 6 5 29 29 H 1.08999 * 109.47671 * 330.00557 * 8 6 5 30 30 H 0.96998 * 119.99538 * 179.97438 * 12 11 9 31 31 H 1.08002 * 120.37735 * 180.26282 * 17 5 4 32 32 H 1.08007 * 119.53239 * 179.77360 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1602 1.2041 0.0000 4 6 1.4590 2.4023 0.0005 5 6 2.1684 3.5991 -0.0044 6 7 1.5038 4.8221 -0.0094 7 6 0.0393 4.8600 -0.0091 8 6 2.2689 6.0715 -0.0140 9 6 2.5316 6.4944 -1.4364 10 1 2.1657 5.8925 -2.2551 11 6 3.2401 7.6491 -1.6926 12 7 3.4698 8.0179 -2.9340 13 14 3.8737 8.6898 -0.2766 14 1 5.2354 8.2340 0.1020 15 1 3.9266 10.1140 -0.6939 16 1 2.9628 8.5486 0.8877 17 6 3.5642 3.5428 0.0008 18 6 4.1879 2.3149 0.0004 19 7 3.4854 1.1964 0.0000 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3632 -1.0277 -0.0005 23 1 1.9501 -0.8400 0.0004 24 1 0.3790 2.4053 0.0001 25 1 -0.3236 4.8738 1.0187 26 1 -0.3010 5.7569 -0.5266 27 1 -0.3471 3.9775 -0.5191 28 1 1.6995 6.8481 0.4966 29 1 3.2174 5.9186 0.5007 30 1 3.9679 8.8305 -3.1141 31 1 4.1474 4.4519 0.0015 32 1 5.2669 2.2658 0.0007 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227647673.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:11 Heat of formation + Delta-G solvation = 51.841525 kcal Electronic energy + Delta-G solvation = -14793.830753 eV Core-core repulsion = 12368.736751 eV Total energy + Delta-G solvation = -2425.094003 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.62891 -36.66444 -35.04122 -32.71008 -30.44438 -29.74881 -28.27734 -26.05492 -25.25875 -22.68574 -21.69310 -20.11935 -17.28812 -16.96632 -16.46858 -15.18587 -14.70612 -14.45682 -14.37354 -14.16782 -13.61347 -13.38168 -13.15321 -12.64452 -12.45269 -12.02402 -11.83322 -11.60368 -11.18064 -10.76303 -10.44114 -10.39005 -9.89833 -9.59733 -9.31799 -8.80949 -8.67809 -7.31763 -6.75917 -6.16579 -4.17082 2.05089 2.42233 3.20937 3.28435 3.29261 3.52351 3.96897 4.30620 4.67229 5.12882 5.14408 5.30298 5.51015 5.61403 5.69212 5.81606 5.91500 5.94904 6.03025 6.11083 6.26105 6.52139 6.60775 6.75537 6.93144 7.10460 7.43156 7.49916 7.94757 7.97070 8.23142 8.46732 8.87523 8.90375 9.42726 10.96526 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.040540 B = 0.007443 C = 0.006887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.517874 B = 3760.922995 C = 4064.444746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.739 5.739 3 C 0.423 3.577 4 C -0.331 4.331 5 C 0.300 3.700 6 N -0.598 5.598 7 C 0.097 3.903 8 C 0.219 3.781 9 C -0.536 4.536 10 H 0.076 0.924 11 C 0.073 3.927 12 N -0.894 5.894 13 Si 0.873 3.127 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.266 1.266 17 C -0.282 4.282 18 C 0.167 3.833 19 N -0.596 5.596 20 H 0.050 0.950 21 H 0.051 0.949 22 H 0.070 0.930 23 H 0.400 0.600 24 H 0.121 0.879 25 H 0.039 0.961 26 H 0.071 0.929 27 H 0.058 0.942 28 H 0.030 0.970 29 H 0.030 0.970 30 H 0.265 0.735 31 H 0.134 0.866 32 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.302 -10.632 7.452 14.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.374 5.374 3 C 0.189 3.811 4 C -0.362 4.362 5 C 0.185 3.815 6 N -0.303 5.303 7 C -0.047 4.047 8 C 0.098 3.902 9 C -0.575 4.575 10 H 0.094 0.906 11 C -0.130 4.130 12 N -0.532 5.532 13 Si 0.700 3.300 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.190 1.190 17 C -0.310 4.310 18 C 0.013 3.987 19 N -0.319 5.319 20 H 0.069 0.931 21 H 0.069 0.931 22 H 0.089 0.911 23 H 0.234 0.766 24 H 0.139 0.861 25 H 0.058 0.942 26 H 0.090 0.910 27 H 0.077 0.923 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.075 0.925 31 H 0.152 0.848 32 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -5.117 -10.980 7.337 14.162 hybrid contribution 0.062 1.255 0.445 1.333 sum -5.055 -9.725 7.781 13.442 Atomic orbital electron populations 1.21443 0.79867 1.01778 1.01135 1.44054 1.05161 1.05270 1.82883 1.17911 0.88221 0.85333 0.89621 1.20621 0.99731 0.90647 1.25188 1.17795 0.91466 0.85462 0.86819 1.46666 1.04848 1.03836 1.74981 1.21537 0.80737 1.02507 0.99929 1.19726 0.91564 0.80866 0.98046 1.21440 1.35841 1.08738 0.91451 0.90558 1.24891 0.95409 0.97143 0.95507 1.69903 1.40291 1.24424 1.18556 0.86901 0.80069 0.80132 0.82939 1.19788 1.20934 1.19036 1.21513 0.93342 0.99796 1.16307 1.21926 0.98717 0.86552 0.91531 1.67075 1.05710 1.31995 1.27072 0.93141 0.93058 0.91118 0.76643 0.86087 0.94250 0.90996 0.92309 0.95221 0.95176 0.92451 0.84775 0.83638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.05 9.92 59.85 0.59 1.64 16 2 N -0.74 -10.05 5.89 -67.25 -0.40 -10.44 16 3 C 0.42 7.46 7.65 -155.00 -1.19 6.27 16 4 C -0.33 -6.04 8.48 -39.03 -0.33 -6.37 16 5 C 0.30 6.17 6.57 -83.64 -0.55 5.62 16 6 N -0.60 -12.51 2.98 -180.83 -0.54 -13.05 16 7 C 0.10 1.64 10.22 59.85 0.61 2.25 16 8 C 0.22 5.11 4.02 -5.19 -0.02 5.09 16 9 C -0.54 -14.82 9.94 -34.44 -0.34 -15.16 16 10 H 0.08 2.37 8.06 -52.49 -0.42 1.95 16 11 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 12 N -0.89 -26.83 13.96 55.43 0.77 -26.06 16 13 Si 0.87 20.52 27.47 -169.99 -4.67 15.85 16 14 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.27 -5.93 6.54 56.52 0.37 -5.56 16 17 C -0.28 -5.75 9.26 -39.22 -0.36 -6.11 16 18 C 0.17 3.08 11.16 -17.63 -0.20 2.88 16 19 N -0.60 -11.13 10.39 -12.53 -0.13 -11.26 16 20 H 0.05 0.50 7.92 -51.93 -0.41 0.09 16 21 H 0.05 0.54 7.92 -51.93 -0.41 0.13 16 22 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.40 4.83 8.95 -40.82 -0.37 4.47 16 24 H 0.12 1.95 4.91 -52.49 -0.26 1.69 16 25 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.07 1.24 8.07 -51.93 -0.42 0.82 16 27 H 0.06 0.90 6.26 -51.93 -0.32 0.57 16 28 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 29 H 0.03 0.70 5.67 -51.93 -0.29 0.41 16 30 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.13 2.84 6.27 -52.49 -0.33 2.51 16 32 H 0.15 2.23 8.06 -52.48 -0.42 1.81 16 LS Contribution 267.93 15.07 4.04 4.04 Total: -1.00 -31.63 267.93 -6.85 -38.48 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -4.04 Total: 4.39 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: -1.88 Total: -1.93 kcal Atomic # 7 Polarization: -60.53 SS G_CDS: -0.29 Total: -60.82 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.67 Total: 15.85 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -31.63 -6.85 -38.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227647673.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.318 kcal (2) G-P(sol) polarization free energy of solvation -31.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds