Wall clock time and date at job start Mon Mar 30 2020 03:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 C 1.53000 * 109.46914 * 182.56317 * 3 2 1 5 5 C 1.52997 * 109.47306 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.47096 * 180.02562 * 5 4 3 7 7 N 1.46906 * 109.46923 * 179.97438 * 6 5 4 8 8 C 1.46894 * 110.99880 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.47155 * 185.38213 * 8 7 6 10 10 C 1.50708 * 115.54730 * 294.80053 * 9 8 7 11 11 H 1.07994 * 120.00501 * 95.20134 * 10 9 8 12 12 C 1.37881 * 119.99823 * 274.92856 * 10 9 8 13 13 N 1.31521 * 119.99926 * 355.42157 * 12 10 9 14 14 Si 1.86801 * 120.00038 * 175.41588 * 12 10 9 15 15 H 1.48495 * 109.46929 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.46745 * 120.00135 * 14 12 10 17 17 H 1.48498 * 109.47103 * 239.99813 * 14 12 10 18 18 C 1.52996 * 117.50305 * 80.46470 * 9 8 7 19 19 C 1.52994 * 117.50444 * 149.12972 * 9 8 7 20 20 H 4.44654 * 5.63184 * 180.02562 * 4 1 2 21 21 H 1.09005 * 109.47033 * 62.57083 * 3 2 1 22 22 H 1.08997 * 109.47540 * 302.56647 * 3 2 1 23 23 H 1.09005 * 109.46862 * 59.99774 * 4 3 2 24 24 H 1.08997 * 109.47286 * 300.00486 * 4 3 2 25 25 H 1.08998 * 109.46841 * 59.99929 * 5 4 3 26 26 H 1.09001 * 109.46884 * 300.00024 * 5 4 3 27 27 H 1.08996 * 109.47149 * 60.00332 * 6 5 4 28 28 H 1.09001 * 109.47006 * 299.99622 * 6 5 4 29 29 H 1.00901 * 110.99671 * 303.95463 * 7 6 5 30 30 H 1.08995 * 109.47366 * 65.38019 * 8 7 6 31 31 H 1.09006 * 109.46837 * 305.37455 * 8 7 6 32 32 H 0.96995 * 119.99832 * 185.00406 * 13 12 10 33 33 H 1.08999 * 117.50032 * 215.00249 * 18 9 8 34 34 H 1.09002 * 117.49839 * 0.02981 * 18 9 8 35 35 H 1.09004 * 117.49798 * 359.97366 * 19 9 8 36 36 H 1.09005 * 117.50278 * 144.97026 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1554 1.4420 0.0645 5 6 4.6853 1.4428 0.0639 6 6 5.1946 2.8841 0.1290 7 7 6.6636 2.8848 0.1290 8 6 7.1894 4.2550 0.1916 9 6 8.7129 4.2234 0.0547 10 6 9.4525 3.5441 1.1784 11 1 9.7337 2.5053 1.0896 12 6 9.7751 4.2506 2.3177 13 7 9.5182 5.5386 2.3876 14 14 10.5770 3.3784 3.7619 15 1 10.7588 1.9417 3.4335 16 1 11.8999 3.9936 4.0390 17 1 9.7104 3.5069 4.9609 18 6 9.2930 4.0905 -1.3548 19 6 9.3875 5.4247 -0.6105 20 1 -1.0502 -0.0006 0.0002 21 1 3.0096 -0.4726 -0.9122 22 1 3.0097 -0.5523 0.8660 23 1 2.7917 1.9153 0.9766 24 1 2.7917 1.9949 -0.8015 25 1 5.0485 0.9696 -0.8484 26 1 5.0493 0.8897 0.9298 27 1 4.8314 3.3568 1.0415 28 1 4.8306 3.4375 -0.7367 29 1 7.0255 2.3241 0.8859 30 1 6.9197 4.7044 1.1473 31 1 6.7638 4.8448 -0.6203 32 1 9.8101 6.0502 3.1582 33 1 10.2096 3.5118 -1.4693 34 1 8.5893 4.0260 -2.1847 35 1 8.7459 6.2375 -0.9511 36 1 10.3662 5.7241 -0.2351 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229688210.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:02 Heat of formation + Delta-G solvation = 38.429582 kcal Electronic energy + Delta-G solvation = -14320.892437 eV Core-core repulsion = 11998.757192 eV Total energy + Delta-G solvation = -2322.135245 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.86769 -37.42934 -35.55620 -33.94408 -33.01620 -29.64385 -27.62109 -26.04504 -23.54212 -22.74446 -22.08711 -20.86849 -18.87588 -17.89286 -16.98374 -16.60449 -16.06012 -15.74895 -15.43617 -15.07071 -14.60462 -14.23434 -13.84378 -13.53333 -13.15831 -12.94617 -12.85019 -12.56623 -12.37306 -12.22905 -12.09900 -11.94645 -11.55101 -11.24158 -10.99420 -10.95365 -10.80016 -10.36067 -9.90579 -9.10645 -8.06254 -6.18977 1.40808 1.44403 1.54981 1.90213 1.94456 2.44437 3.20894 3.27923 3.57211 3.80933 4.05014 4.14988 4.34457 4.43572 4.48919 4.63463 4.71549 4.75189 4.80536 4.85742 4.95278 5.02351 5.05592 5.09567 5.14882 5.23772 5.32315 5.39889 5.46704 5.66909 5.72464 5.83253 6.37804 6.49928 6.68239 6.73648 6.91242 7.49458 9.00596 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.031110 B = 0.005106 C = 0.004631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.818717 B = 5481.918368 C = 6044.584997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.217 4.217 3 C -0.014 4.014 4 C -0.103 4.103 5 C -0.106 4.106 6 C 0.057 3.943 7 N -0.681 5.681 8 C 0.119 3.881 9 C 0.023 3.977 10 C -0.501 4.501 11 H 0.054 0.946 12 C 0.022 3.978 13 N -0.910 5.910 14 Si 0.949 3.051 15 H -0.265 1.265 16 H -0.285 1.285 17 H -0.283 1.283 18 C -0.178 4.178 19 C -0.163 4.163 20 H 0.243 0.757 21 H 0.097 0.903 22 H 0.094 0.906 23 H 0.058 0.942 24 H 0.065 0.935 25 H 0.075 0.925 26 H 0.064 0.936 27 H 0.014 0.986 28 H 0.066 0.934 29 H 0.341 0.659 30 H -0.002 1.002 31 H 0.047 0.953 32 H 0.258 0.742 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.721 -8.343 -3.814 15.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.217 4.217 3 C -0.050 4.050 4 C -0.142 4.142 5 C -0.144 4.144 6 C -0.073 4.073 7 N -0.311 5.311 8 C -0.011 4.011 9 C 0.022 3.978 10 C -0.539 4.539 11 H 0.072 0.928 12 C -0.178 4.178 13 N -0.548 5.548 14 Si 0.775 3.225 15 H -0.189 1.189 16 H -0.211 1.211 17 H -0.209 1.209 18 C -0.216 4.216 19 C -0.202 4.202 20 H 0.259 0.741 21 H 0.115 0.885 22 H 0.112 0.888 23 H 0.077 0.923 24 H 0.084 0.916 25 H 0.094 0.906 26 H 0.083 0.917 27 H 0.032 0.968 28 H 0.085 0.915 29 H 0.158 0.842 30 H 0.016 0.984 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.707 -8.237 -4.354 15.757 hybrid contribution 0.309 0.387 1.849 1.914 sum -12.398 -7.850 -2.505 14.887 Atomic orbital electron populations 1.25706 0.96957 1.00001 1.00720 1.23786 0.95643 1.01264 1.00993 1.18804 0.84035 0.97857 1.04307 1.21395 0.94626 0.95785 1.02345 1.21464 0.94536 0.95252 1.03103 1.22018 0.87873 0.97976 0.99404 1.60446 1.06641 1.12180 1.51868 1.21184 0.94543 0.88873 0.96479 1.18927 0.90759 0.97608 0.90508 1.20750 1.36489 0.96796 0.99887 0.92779 1.25700 0.96157 0.95441 1.00474 1.70133 1.46818 1.07325 1.30567 0.85642 0.77893 0.79285 0.79647 1.18877 1.21088 1.20949 1.22841 1.02060 1.00150 0.96502 1.22405 1.01217 0.91119 1.05427 0.74058 0.88456 0.88821 0.92283 0.91622 0.90604 0.91706 0.96823 0.91533 0.84156 0.98350 0.93468 0.93341 0.91030 0.89664 0.91346 0.92454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.90 19.25 74.32 1.43 -2.47 16 2 C -0.22 -4.50 13.34 31.13 0.42 -4.09 16 3 C -0.01 -0.25 5.70 28.79 0.16 -0.08 16 4 C -0.10 -2.11 5.17 30.59 0.16 -1.95 16 5 C -0.11 -2.51 5.47 30.59 0.17 -2.34 16 6 C 0.06 1.73 5.68 86.30 0.49 2.22 16 7 N -0.68 -26.10 6.47 -513.89 -3.33 -29.43 16 8 C 0.12 5.34 5.54 86.30 0.48 5.82 16 9 C 0.02 1.12 1.65 -52.93 -0.09 1.03 16 10 C -0.50 -27.00 8.33 25.60 0.21 -26.78 16 11 H 0.05 2.92 7.82 -2.91 -0.02 2.89 16 12 C 0.02 1.20 5.43 84.65 0.46 1.66 16 13 N -0.91 -52.08 12.65 21.45 0.27 -51.81 16 14 Si 0.95 43.02 29.54 68.60 2.03 45.05 16 15 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 16 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 17 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 18 C -0.18 -7.90 9.96 30.62 0.30 -7.59 16 19 C -0.16 -7.93 9.14 30.62 0.28 -7.65 16 20 H 0.24 2.45 7.80 -4.41 -0.03 2.41 16 21 H 0.10 1.55 8.14 -2.38 -0.02 1.53 16 22 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 23 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 24 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.34 13.66 8.30 -89.69 -0.74 12.91 16 30 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 31 H 0.05 2.00 8.08 -2.38 -0.02 1.98 16 32 H 0.26 14.12 8.32 -92.71 -0.77 13.35 16 33 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 34 H 0.08 3.40 8.14 -2.39 -0.02 3.38 16 35 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 36 H 0.06 3.03 8.14 -2.38 -0.02 3.01 16 Total: -1.00 -59.81 310.82 3.72 -56.09 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: 0.28 Total: 22.32 kcal Atomic # 6 Polarization: -46.69 SS G_CDS: 4.47 Total: -42.22 kcal Atomic # 7 Polarization: -78.18 SS G_CDS: -3.05 Total: -81.24 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -59.81 3.72 -56.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229688210.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.519 kcal (2) G-P(sol) polarization free energy of solvation -59.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds