Wall clock time and date at job start Mon Mar 30 2020 03:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46503 * 120.00181 * 2 1 4 4 C 1.50698 * 109.47041 * 270.00173 * 3 2 1 5 5 H 1.08007 * 119.99860 * 359.97438 * 4 3 2 6 6 C 1.37870 * 120.00269 * 179.97438 * 4 3 2 7 7 N 1.31519 * 120.00172 * 179.97438 * 6 4 3 8 8 Si 1.86797 * 119.99945 * 359.97438 * 6 4 3 9 9 H 1.48500 * 109.47020 * 89.99780 * 8 6 4 10 10 H 1.48501 * 109.47175 * 209.99794 * 8 6 4 11 11 H 1.48503 * 109.47250 * 329.99863 * 8 6 4 12 12 C 1.39984 * 120.00117 * 179.97438 * 2 1 3 13 13 C 1.38850 * 119.97623 * 179.97438 * 12 2 1 14 14 C 1.38264 * 120.11392 * 179.97438 * 13 12 2 15 15 C 1.38610 * 120.07156 * 0.27858 * 14 13 12 16 16 N 1.40341 * 120.02403 * 179.69780 * 15 14 13 17 17 C 1.39449 * 119.95185 * 359.42579 * 15 14 13 18 18 N 1.39992 * 120.05583 * 180.27366 * 17 15 14 19 19 C 1.38633 * 119.88328 * 0.57113 * 17 15 14 20 20 H 1.08998 * 109.46609 * 269.99665 * 1 2 3 21 21 H 1.08990 * 109.46970 * 30.00074 * 1 2 3 22 22 H 1.09002 * 109.46758 * 150.00756 * 1 2 3 23 23 H 1.09006 * 109.46769 * 29.99543 * 3 2 1 24 24 H 1.08991 * 109.47328 * 149.99907 * 3 2 1 25 25 H 0.96996 * 120.00157 * 180.02562 * 7 6 4 26 26 H 1.08000 * 119.94718 * 359.97438 * 13 12 2 27 27 H 1.08002 * 119.96124 * 179.97438 * 14 13 12 28 28 H 0.97001 * 119.99766 * 0.02562 * 16 15 14 29 29 H 0.96999 * 119.99656 * 179.97438 * 16 15 14 30 30 H 0.97009 * 120.00413 * 180.29763 * 18 17 15 31 31 H 0.97005 * 120.00300 * 0.29741 * 18 17 15 32 32 H 1.07998 * 120.03453 * 179.74685 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0981 1.0957 -2.2417 6 6 3.1260 2.8779 -1.6728 7 7 3.3456 3.2573 -2.9128 8 14 3.7318 3.9299 -0.2531 9 1 5.1051 3.5091 0.1240 10 1 3.7467 5.3564 -0.6652 11 1 2.8251 3.7603 0.9108 12 6 2.1649 -1.2123 0.0005 13 6 3.5534 -1.2117 0.0000 14 6 4.2477 -2.4074 0.0011 15 6 3.5590 -3.6103 -0.0031 16 7 4.2647 -4.8234 -0.0085 17 6 2.1646 -3.6143 0.0036 18 7 1.4669 -4.8280 0.0052 19 6 1.4704 -2.4143 0.0026 20 1 -0.3632 -0.0001 1.0277 21 1 -0.3633 0.8899 -0.5138 22 1 -0.3633 -0.8901 -0.5137 23 1 1.6084 2.0284 0.5138 24 1 3.1499 1.1384 0.5138 25 1 3.8224 4.0831 -3.0901 26 1 4.0922 -0.2756 -0.0013 27 1 5.3277 -2.4040 0.0002 28 1 5.2347 -4.8202 -0.0088 29 1 3.7824 -5.6650 -0.0110 30 1 0.4968 -4.8299 0.0055 31 1 1.9535 -5.6672 0.0059 32 1 0.3904 -2.4146 0.0037 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234266075.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:41 Heat of formation + Delta-G solvation = 19.497290 kcal Electronic energy + Delta-G solvation = -14778.476101 eV Core-core repulsion = 12351.979547 eV Total energy + Delta-G solvation = -2426.496554 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.49629 -37.90568 -34.94491 -34.69225 -33.89588 -30.99277 -29.19017 -28.72864 -26.12996 -23.86742 -23.00151 -21.09511 -19.01829 -18.55697 -18.10441 -17.13348 -16.45705 -16.27158 -15.88455 -15.64379 -14.97302 -14.56464 -14.43280 -14.05400 -13.81093 -13.44501 -13.05762 -12.98492 -12.50697 -12.41470 -12.06630 -11.74935 -11.58889 -11.38838 -11.37937 -10.77171 -9.38385 -8.45872 -8.28437 -7.14183 -6.33072 0.83606 1.19051 1.37096 1.38277 1.49187 2.34779 2.65871 3.05047 3.09127 3.31035 3.44141 4.15083 4.42227 4.62487 4.70505 4.74748 4.83637 4.96767 4.97675 5.01685 5.21853 5.35205 5.52058 5.60013 5.81219 5.95887 6.22151 6.54888 6.68285 6.83568 6.92411 7.12342 7.16347 7.32730 7.32988 8.88863 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.037355 B = 0.007635 C = 0.006924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.394356 B = 3666.458517 C = 4042.839777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.633 5.633 3 C 0.235 3.765 4 C -0.533 4.533 5 H 0.024 0.976 6 C 0.010 3.990 7 N -0.949 5.949 8 Si 0.947 3.053 9 H -0.266 1.266 10 H -0.280 1.280 11 H -0.243 1.243 12 C 0.204 3.796 13 C -0.226 4.226 14 C -0.115 4.115 15 C 0.076 3.924 16 N -0.881 5.881 17 C 0.189 3.811 18 N -0.869 5.869 19 C -0.250 4.250 20 H 0.057 0.943 21 H 0.052 0.948 22 H 0.069 0.931 23 H 0.033 0.967 24 H 0.028 0.972 25 H 0.267 0.733 26 H 0.098 0.902 27 H 0.127 0.873 28 H 0.400 0.600 29 H 0.395 0.605 30 H 0.404 0.596 31 H 0.400 0.600 32 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.224 -15.059 9.341 17.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.344 5.344 3 C 0.112 3.888 4 C -0.572 4.572 5 H 0.042 0.958 6 C -0.188 4.188 7 N -0.590 5.590 8 Si 0.770 3.230 9 H -0.191 1.191 10 H -0.206 1.206 11 H -0.167 1.167 12 C 0.101 3.899 13 C -0.251 4.251 14 C -0.139 4.139 15 C -0.029 4.029 16 N -0.429 5.429 17 C 0.082 3.918 18 N -0.413 5.413 19 C -0.278 4.278 20 H 0.075 0.925 21 H 0.071 0.929 22 H 0.088 0.912 23 H 0.051 0.949 24 H 0.046 0.954 25 H 0.076 0.924 26 H 0.116 0.884 27 H 0.145 0.855 28 H 0.229 0.771 29 H 0.224 0.776 30 H 0.233 0.767 31 H 0.230 0.770 32 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.295 -14.635 9.245 17.462 hybrid contribution 0.405 0.387 -0.224 0.603 sum -1.890 -14.249 9.022 16.970 Atomic orbital electron populations 1.21536 0.79658 1.02065 1.00862 1.46543 1.05140 1.03045 1.79668 1.19265 0.92542 0.82537 0.94476 1.21737 1.36097 1.06461 0.92881 0.95808 1.25881 0.95586 0.98830 0.98485 1.70077 1.43017 1.24460 1.21402 0.85720 0.79848 0.77701 0.79755 1.19073 1.20564 1.16670 1.17701 0.91235 0.85834 0.95176 1.20379 0.92844 0.97927 1.13981 1.20239 0.99191 0.90212 1.04246 1.17082 0.89356 0.87590 1.08864 1.41884 1.08252 1.03369 1.89411 1.17001 0.89297 0.87026 0.98430 1.42054 1.08828 1.03726 1.86719 1.19914 0.99300 0.89381 1.19233 0.92484 0.92916 0.91197 0.94946 0.95402 0.92424 0.88425 0.85525 0.77110 0.77602 0.76671 0.77037 0.85185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.60 10.19 127.77 1.30 4.90 16 2 N -0.63 -27.83 3.00 -726.40 -2.18 -30.01 16 3 C 0.23 11.59 3.98 85.63 0.34 11.93 16 4 C -0.53 -31.64 9.94 25.60 0.25 -31.39 16 5 H 0.02 1.61 8.06 -2.91 -0.02 1.58 16 6 C 0.01 0.57 5.47 84.65 0.46 1.03 16 7 N -0.95 -60.42 13.96 21.45 0.30 -60.12 16 8 Si 0.95 44.10 27.47 68.60 1.88 45.98 16 9 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 10 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 11 H -0.24 -10.39 6.54 99.48 0.65 -9.74 16 12 C 0.20 8.58 6.55 38.13 0.25 8.83 16 13 C -0.23 -9.66 9.21 22.42 0.21 -9.45 16 14 C -0.11 -4.05 9.88 22.36 0.22 -3.83 16 15 C 0.08 2.29 6.78 38.16 0.26 2.55 16 16 N -0.88 -18.42 9.10 -50.80 -0.46 -18.89 16 17 C 0.19 5.64 6.77 38.22 0.26 5.90 16 18 N -0.87 -17.31 9.09 -51.01 -0.46 -17.77 16 19 C -0.25 -8.66 9.05 22.51 0.20 -8.46 16 20 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 21 H 0.05 1.95 8.07 -2.39 -0.02 1.93 16 22 H 0.07 2.19 6.20 -2.39 -0.01 2.18 16 23 H 0.03 1.54 7.13 -2.38 -0.02 1.52 16 24 H 0.03 1.37 5.62 -2.39 -0.01 1.36 16 25 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 26 H 0.10 4.59 6.13 -2.91 -0.02 4.57 16 27 H 0.13 3.90 8.06 -2.91 -0.02 3.87 16 28 H 0.40 7.15 8.85 -92.71 -0.82 6.33 16 29 H 0.40 6.20 7.00 -92.71 -0.65 5.55 16 30 H 0.40 6.65 8.85 -92.70 -0.82 5.83 16 31 H 0.40 5.96 7.00 -92.70 -0.65 5.31 16 32 H 0.13 3.95 6.14 -2.91 -0.02 3.93 16 Total: -1.00 -72.18 264.75 1.03 -71.15 By element: Atomic # 1 Polarization: 29.46 SS G_CDS: -1.81 Total: 27.65 kcal Atomic # 6 Polarization: -21.75 SS G_CDS: 3.76 Total: -18.00 kcal Atomic # 7 Polarization: -123.98 SS G_CDS: -2.81 Total: -126.79 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 1.88 Total: 45.98 kcal Total: -72.18 1.03 -71.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234266075.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.650 kcal (2) G-P(sol) polarization free energy of solvation -72.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds