Wall clock time and date at job start Mon Mar 30 2020 03:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46500 * 119.99828 * 2 1 4 4 C 1.39169 * 120.00238 * 180.02562 * 2 1 3 5 5 C 1.39496 * 120.86387 * 359.97438 * 4 2 1 6 6 C 1.37868 * 119.06664 * 180.02562 * 5 4 2 7 7 N 1.32013 * 120.84436 * 359.97068 * 6 5 4 8 8 C 1.31979 * 121.90840 * 0.03156 * 7 6 5 9 9 C 1.50700 * 119.57800 * 180.02562 * 8 7 6 10 10 H 1.09004 * 109.47210 * 184.99619 * 9 8 7 11 11 N 1.46899 * 109.47483 * 64.99288 * 9 8 7 12 12 C 1.50702 * 109.46869 * 304.99326 * 9 8 7 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 9 8 14 14 C 1.37884 * 119.99942 * 179.72213 * 12 9 8 15 15 N 1.31514 * 119.99985 * 180.27663 * 14 12 9 16 16 Si 1.86800 * 119.99777 * 0.28166 * 14 12 9 17 17 H 1.48498 * 109.47109 * 89.99834 * 16 14 12 18 18 H 1.48507 * 109.46754 * 209.99574 * 16 14 12 19 19 H 1.48498 * 109.47278 * 329.99405 * 16 14 12 20 20 C 1.37910 * 120.84490 * 0.26718 * 8 7 6 21 21 H 1.09003 * 109.47453 * 269.99423 * 1 2 3 22 22 H 1.09001 * 109.47576 * 30.00068 * 1 2 3 23 23 H 1.09010 * 109.46971 * 150.00301 * 1 2 3 24 24 H 1.08996 * 109.47008 * 240.00609 * 3 2 1 25 25 H 1.09001 * 109.47063 * 0.02562 * 3 2 1 26 26 H 1.08998 * 109.46756 * 119.99833 * 3 2 1 27 27 H 1.08002 * 120.46744 * 0.02562 * 5 4 2 28 28 H 1.08001 * 119.58002 * 179.97438 * 6 5 4 29 29 H 1.00903 * 111.00048 * 300.00270 * 11 9 8 30 30 H 1.00904 * 110.99882 * 63.95460 * 11 9 8 31 31 H 0.96996 * 119.99730 * 180.02562 * 15 14 12 32 32 H 1.08002 * 120.47136 * 179.70810 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1609 -1.2052 -0.0005 5 6 1.4818 -2.4237 -0.0005 6 6 2.2083 -3.5954 -0.0006 7 7 3.5282 -3.5734 -0.0011 8 6 4.2070 -2.4416 -0.0011 9 6 5.7136 -2.4778 -0.0024 10 1 6.1015 -1.4630 0.0873 11 7 6.1881 -3.0741 -1.2582 12 6 6.1971 -3.3050 1.1608 13 1 5.4847 -3.7595 1.8334 14 6 7.5489 -3.4869 1.3627 15 7 7.9708 -4.2133 2.3746 16 14 8.7810 -2.7013 0.1990 17 1 9.1408 -1.3496 0.6978 18 1 10.0018 -3.5439 0.1283 19 1 8.1801 -2.5860 -1.1540 20 6 3.5553 -1.2262 0.0051 21 1 -0.3634 -0.0001 1.0277 22 1 -0.3634 0.8900 -0.5138 23 1 -0.3633 -0.8901 -0.5138 24 1 2.8240 1.3265 -0.8900 25 1 1.4891 2.0972 0.0005 26 1 2.8241 1.3265 0.8900 27 1 0.4020 -2.4488 -0.0006 28 1 1.6909 -4.5435 -0.0001 29 1 5.8418 -4.0159 -1.3648 30 1 5.9317 -2.5028 -2.0494 31 1 8.9217 -4.3409 2.5168 32 1 4.1168 -0.3037 0.0098 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238318120.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:11 Heat of formation + Delta-G solvation = 55.393700 kcal Electronic energy + Delta-G solvation = -14846.703258 eV Core-core repulsion = 12421.763289 eV Total energy + Delta-G solvation = -2424.939969 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.82475 -36.88347 -34.52720 -31.71491 -30.75378 -30.18685 -28.19260 -26.18580 -25.17239 -22.74210 -21.90947 -19.55554 -17.00709 -16.81382 -15.96122 -15.13637 -15.05344 -14.58390 -14.19874 -13.94408 -13.79584 -13.27863 -12.94285 -12.73549 -12.37235 -12.17078 -12.14423 -11.57982 -11.11613 -10.71418 -10.32701 -10.03599 -9.88163 -9.14431 -8.66658 -8.40802 -8.33563 -7.44161 -7.09130 -5.86482 -3.93654 1.79444 2.07757 3.11990 3.58514 3.68901 4.01207 4.51872 4.81680 4.87659 4.96822 5.08560 5.20075 5.35381 5.42842 5.47296 5.51710 5.57069 5.65406 5.82817 5.93995 6.08124 6.32395 6.38733 6.43658 6.95714 7.19800 7.28298 7.56460 7.69233 8.30520 8.44850 8.79508 8.97328 9.18797 9.77300 11.23829 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.040065 B = 0.007744 C = 0.007175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.694878 B = 3614.768189 C = 3901.583509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.635 5.635 3 C 0.096 3.904 4 C 0.240 3.760 5 C -0.271 4.271 6 C 0.132 3.868 7 N -0.499 5.499 8 C 0.175 3.825 9 C 0.231 3.769 10 H 0.047 0.953 11 N -0.827 5.827 12 C -0.505 4.505 13 H 0.072 0.928 14 C 0.081 3.919 15 N -0.903 5.903 16 Si 0.865 3.135 17 H -0.299 1.299 18 H -0.304 1.304 19 H -0.193 1.193 20 C -0.250 4.250 21 H 0.046 0.954 22 H 0.063 0.937 23 H 0.068 0.932 24 H 0.054 0.946 25 H 0.070 0.930 26 H 0.056 0.944 27 H 0.121 0.879 28 H 0.145 0.855 29 H 0.339 0.661 30 H 0.303 0.697 31 H 0.261 0.739 32 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.297 9.649 -7.222 18.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.348 5.348 3 C -0.047 4.047 4 C 0.131 3.869 5 C -0.297 4.297 6 C -0.026 4.026 7 N -0.211 5.211 8 C 0.036 3.964 9 C 0.121 3.879 10 H 0.065 0.935 11 N -0.355 5.355 12 C -0.543 4.543 13 H 0.091 0.909 14 C -0.122 4.122 15 N -0.540 5.540 16 Si 0.692 3.308 17 H -0.227 1.227 18 H -0.232 1.232 19 H -0.114 1.114 20 C -0.275 4.275 21 H 0.064 0.936 22 H 0.082 0.918 23 H 0.086 0.914 24 H 0.073 0.927 25 H 0.089 0.911 26 H 0.075 0.925 27 H 0.139 0.861 28 H 0.162 0.838 29 H 0.153 0.847 30 H 0.113 0.887 31 H 0.070 0.930 32 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -13.038 9.053 -6.851 17.289 hybrid contribution -0.966 1.136 -0.426 1.550 sum -14.004 10.189 -7.277 18.785 Atomic orbital electron populations 1.21622 0.79758 1.02380 1.01019 1.46172 1.04851 1.03276 1.80550 1.21598 0.96899 0.84535 1.01658 1.18023 0.91414 0.85658 0.91792 1.21473 1.00148 0.92263 1.15777 1.22517 0.90382 0.96812 0.92859 1.67668 1.07472 1.30426 1.15510 1.22622 0.99668 0.86674 0.87400 1.18590 0.81998 0.96914 0.90421 0.93547 1.60160 1.65097 1.06768 1.03490 1.20703 0.92696 1.32220 1.08696 0.90945 1.24975 0.98672 0.93952 0.94601 1.69965 1.14900 1.39291 1.29872 0.87243 0.78887 0.77551 0.87097 1.22665 1.23187 1.11407 1.21570 0.92053 1.00172 1.13724 0.93557 0.91789 0.91363 0.92743 0.91130 0.92505 0.86076 0.83815 0.84717 0.88653 0.92979 0.85767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.90 10.19 59.85 0.61 1.51 16 2 N -0.64 -8.18 3.39 -187.34 -0.64 -8.81 16 3 C 0.10 1.02 9.44 59.85 0.56 1.58 16 4 C 0.24 3.92 6.58 -83.61 -0.55 3.37 16 5 C -0.27 -4.26 9.27 -39.25 -0.36 -4.62 16 6 C 0.13 2.34 11.17 -17.61 -0.20 2.14 16 7 N -0.50 -10.82 9.90 -9.57 -0.09 -10.91 16 8 C 0.18 3.80 5.67 -82.65 -0.47 3.33 16 9 C 0.23 5.52 2.43 -70.02 -0.17 5.35 16 10 H 0.05 1.10 7.30 -51.93 -0.38 0.72 16 11 N -0.83 -18.07 5.81 -6.65 -0.04 -18.11 16 12 C -0.50 -14.75 9.11 -34.44 -0.31 -15.06 16 13 H 0.07 2.37 7.92 -52.49 -0.42 1.96 16 14 C 0.08 2.43 5.47 -17.82 -0.10 2.33 16 15 N -0.90 -28.85 13.96 55.43 0.77 -28.08 16 16 Si 0.86 22.12 26.94 -169.99 -4.58 17.54 16 17 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 18 H -0.30 -8.01 7.11 56.52 0.40 -7.61 16 19 H -0.19 -4.54 5.16 56.52 0.29 -4.25 16 20 C -0.25 -4.67 8.98 -39.25 -0.35 -5.02 16 21 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 22 H 0.06 0.46 7.92 -51.93 -0.41 0.05 16 23 H 0.07 0.62 6.26 -51.92 -0.32 0.29 16 24 H 0.05 0.57 8.00 -51.93 -0.42 0.15 16 25 H 0.07 0.54 7.79 -51.93 -0.40 0.14 16 26 H 0.06 0.64 7.98 -51.93 -0.41 0.22 16 27 H 0.12 1.53 6.28 -52.49 -0.33 1.20 16 28 H 0.14 2.10 8.06 -52.49 -0.42 1.68 16 29 H 0.34 7.56 8.92 -39.29 -0.35 7.21 16 30 H 0.30 5.72 9.06 -39.29 -0.36 5.36 16 31 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 32 H 0.12 2.14 6.78 -52.49 -0.36 1.78 16 LS Contribution 266.40 15.07 4.01 4.01 Total: -1.00 -34.16 266.40 -6.15 -40.30 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -4.25 Total: 9.13 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: -1.34 Total: -5.08 kcal Atomic # 7 Polarization: -65.92 SS G_CDS: 0.00 Total: -65.91 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.58 Total: 17.54 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -34.16 -6.15 -40.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238318120.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.697 kcal (2) G-P(sol) polarization free energy of solvation -34.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds