Wall clock time and date at job start Mon Mar 30 2020 03:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46893 * 111.00377 * 2 1 4 4 C 1.39009 * 110.99959 * 123.95783 * 2 1 3 5 5 N 1.32420 * 119.70342 * 304.71976 * 4 2 1 6 6 C 1.31942 * 121.62272 * 180.23968 * 5 4 2 7 7 C 1.38063 * 120.85336 * 359.77632 * 6 5 4 8 8 C 1.38840 * 119.33046 * 359.97342 * 7 6 5 9 9 C 1.38343 * 118.50232 * 0.02562 * 8 7 6 10 10 C 1.50701 * 120.44850 * 179.97438 * 9 8 7 11 11 H 1.09000 * 109.46802 * 213.93250 * 10 9 8 12 12 N 1.46903 * 109.47190 * 333.93262 * 10 9 8 13 13 C 1.50701 * 109.47008 * 93.93546 * 10 9 8 14 14 H 1.07996 * 120.00378 * 335.25453 * 13 10 9 15 15 C 1.37881 * 120.00061 * 155.26027 * 13 10 9 16 16 N 1.31522 * 119.99620 * 5.74294 * 15 13 10 17 17 Si 1.86794 * 120.00021 * 185.74214 * 15 13 10 18 18 H 1.48502 * 109.46951 * 179.97438 * 17 15 13 19 19 H 1.48498 * 109.47386 * 299.99759 * 17 15 13 20 20 H 1.48505 * 109.47258 * 60.00097 * 17 15 13 21 21 H 1.08997 * 109.46718 * 296.04803 * 1 2 3 22 22 H 1.09009 * 109.46579 * 56.03891 * 1 2 3 23 23 H 1.08992 * 109.47596 * 176.04465 * 1 2 3 24 24 H 1.09007 * 109.47203 * 188.68643 * 3 2 1 25 25 H 1.09002 * 109.47520 * 308.68559 * 3 2 1 26 26 H 1.09000 * 109.47064 * 68.68352 * 3 2 1 27 27 H 1.08001 * 119.57181 * 179.74560 * 6 5 4 28 28 H 1.08006 * 120.33554 * 179.97438 * 7 6 5 29 29 H 1.08000 * 120.74809 * 179.97438 * 8 7 6 30 30 H 1.00900 * 110.99621 * 66.23200 * 12 10 9 31 31 H 1.00899 * 110.99685 * 190.18466 * 12 10 9 32 32 H 0.96998 * 119.99915 * 355.06650 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.9672 -0.7249 1.0764 5 7 1.5907 -0.4141 2.3073 6 6 2.0434 -1.0736 3.3566 7 6 2.9288 -2.1221 3.2058 8 6 3.3446 -2.4833 1.9313 9 6 2.8529 -1.7733 0.8506 10 6 3.2754 -2.1276 -0.5520 11 1 3.3252 -1.2217 -1.1561 12 7 4.5974 -2.7671 -0.5183 13 6 2.2726 -3.0781 -1.1536 14 1 1.6657 -3.7000 -0.5123 15 6 2.1301 -3.1540 -2.5229 16 7 2.9448 -2.4823 -3.3071 17 14 0.7799 -4.2107 -3.2643 18 1 0.8389 -4.1219 -4.7455 19 1 0.9696 -5.6225 -2.8446 20 1 -0.5425 -3.7274 -2.7922 21 1 -0.3633 0.4513 0.9233 22 1 -0.3633 0.5742 -0.8525 23 1 -0.3634 -1.0251 -0.0709 24 1 3.0742 1.3464 -0.1552 25 1 1.5261 1.9408 -0.8022 26 1 1.7770 1.8444 0.9574 27 1 1.7174 -0.7893 4.3462 28 1 3.2944 -2.6560 4.0706 29 1 4.0369 -3.2995 1.7870 30 1 4.5553 -3.6601 -0.0504 31 1 4.9760 -2.8639 -1.4486 32 1 3.5993 -1.8782 -2.9230 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238323169.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:22 Heat of formation + Delta-G solvation = 25.363172 kcal Electronic energy + Delta-G solvation = -15432.370398 eV Core-core repulsion = 13006.128208 eV Total energy + Delta-G solvation = -2426.242190 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.44898 -37.70345 -37.08341 -33.83278 -32.20242 -31.05611 -28.55440 -27.53646 -25.86107 -25.13187 -22.42962 -22.15623 -18.98270 -18.23899 -17.75271 -16.72691 -16.19002 -15.80606 -15.67884 -15.06748 -14.80656 -14.62188 -14.18379 -14.08187 -13.81394 -13.30711 -13.14653 -12.95155 -12.71515 -12.62107 -12.01554 -11.62233 -11.45668 -10.74288 -10.57210 -10.48378 -9.76170 -9.35446 -9.19108 -8.48793 -6.29942 0.24789 0.48987 1.51445 1.57675 1.76907 2.54972 2.84342 2.91426 3.22891 3.63159 4.06043 4.10772 4.23107 4.31635 4.37745 4.53753 4.54943 4.55955 4.69003 4.79318 4.84663 4.90173 5.19097 5.37333 5.55715 5.71322 5.91858 5.97591 6.13710 6.45274 6.59234 6.64572 6.86499 7.06185 7.47952 8.80469 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.026295 B = 0.011367 C = 0.009866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.572978 B = 2462.593962 C = 2837.246603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.501 5.501 3 C 0.038 3.962 4 C 0.264 3.736 5 N -0.529 5.529 6 C 0.077 3.923 7 C -0.167 4.167 8 C -0.084 4.084 9 C -0.077 4.077 10 C 0.243 3.757 11 H 0.034 0.966 12 N -0.845 5.845 13 C -0.608 4.608 14 H 0.027 0.973 15 C -0.010 4.010 16 N -0.926 5.926 17 Si 1.105 2.895 18 H -0.284 1.284 19 H -0.275 1.275 20 H -0.279 1.279 21 H 0.042 0.958 22 H 0.083 0.917 23 H 0.045 0.955 24 H 0.052 0.948 25 H 0.088 0.912 26 H 0.038 0.962 27 H 0.185 0.815 28 H 0.169 0.831 29 H 0.139 0.861 30 H 0.327 0.673 31 H 0.327 0.673 32 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.035 2.410 10.153 10.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 N -0.224 5.224 3 C -0.109 4.109 4 C 0.037 3.963 5 N -0.241 5.241 6 C -0.082 4.082 7 C -0.186 4.186 8 C -0.111 4.111 9 C -0.081 4.081 10 C 0.133 3.867 11 H 0.052 0.948 12 N -0.372 5.372 13 C -0.648 4.648 14 H 0.045 0.955 15 C -0.211 4.211 16 N -0.563 5.563 17 Si 0.929 3.071 18 H -0.210 1.210 19 H -0.201 1.201 20 H -0.205 1.205 21 H 0.060 0.940 22 H 0.102 0.898 23 H 0.064 0.936 24 H 0.071 0.929 25 H 0.106 0.894 26 H 0.056 0.944 27 H 0.201 0.799 28 H 0.187 0.813 29 H 0.157 0.843 30 H 0.138 0.862 31 H 0.137 0.863 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.857 3.015 8.828 9.757 hybrid contribution 0.501 -0.475 1.160 1.349 sum -2.355 2.541 9.988 10.572 Atomic orbital electron populations 1.22201 0.85254 1.01482 1.01276 1.59932 1.09730 1.14788 1.37944 1.22329 1.00146 0.87065 1.01333 1.19642 0.95090 0.94138 0.87454 1.67609 1.26054 1.30645 0.99809 1.22979 0.94797 0.92913 0.97481 1.22415 0.99052 0.99096 0.98040 1.21590 0.98321 0.99085 0.92090 1.20967 0.95564 0.93849 0.97759 1.17681 0.86364 0.94153 0.88456 0.94841 1.59569 1.26547 1.27924 1.23154 1.22488 1.24262 1.24054 0.94007 0.95495 1.26875 1.00416 0.99176 0.94628 1.70922 1.20235 1.26577 1.38605 0.83072 0.73688 0.74934 0.75453 1.20960 1.20054 1.20526 0.93973 0.89793 0.93637 0.92874 0.89376 0.94375 0.79851 0.81348 0.84335 0.86204 0.86284 0.92916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.67 9.39 127.69 1.20 2.87 16 2 N -0.50 -20.93 4.02 -751.80 -3.02 -23.96 16 3 C 0.04 1.33 9.57 127.69 1.22 2.56 16 4 C 0.26 11.27 5.34 133.04 0.71 11.98 16 5 N -0.53 -19.85 9.45 -193.27 -1.83 -21.68 16 6 C 0.08 2.32 11.17 84.63 0.95 3.27 16 7 C -0.17 -4.87 10.10 22.37 0.23 -4.65 16 8 C -0.08 -3.12 9.39 22.44 0.21 -2.91 16 9 C -0.08 -3.44 5.06 -19.63 -0.10 -3.54 16 10 C 0.24 12.14 2.30 43.42 0.10 12.24 16 11 H 0.03 1.89 6.42 -2.39 -0.02 1.88 16 12 N -0.85 -38.03 8.72 -174.95 -1.53 -39.55 16 13 C -0.61 -33.13 8.53 25.60 0.22 -32.91 16 14 H 0.03 1.51 7.81 -2.91 -0.02 1.49 16 15 C -0.01 -0.55 5.45 84.65 0.46 -0.09 16 16 N -0.93 -54.10 13.63 21.45 0.29 -53.81 16 17 Si 1.10 49.97 29.91 68.60 2.05 52.02 16 18 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 19 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 20 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 21 H 0.04 1.44 7.75 -2.39 -0.02 1.42 16 22 H 0.08 2.72 8.07 -2.38 -0.02 2.71 16 23 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 24 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 25 H 0.09 2.66 8.04 -2.39 -0.02 2.64 16 26 H 0.04 1.25 7.91 -2.39 -0.02 1.23 16 27 H 0.18 3.94 8.06 -2.91 -0.02 3.91 16 28 H 0.17 3.39 8.06 -2.91 -0.02 3.37 16 29 H 0.14 4.79 6.59 -2.91 -0.02 4.77 16 30 H 0.33 13.72 7.55 -89.69 -0.68 13.04 16 31 H 0.33 15.37 8.57 -89.69 -0.77 14.60 16 32 H 0.26 15.38 6.29 -92.71 -0.58 14.80 16 Total: -1.00 -64.14 270.76 1.04 -63.11 By element: Atomic # 1 Polarization: 35.19 SS G_CDS: -0.13 Total: 35.06 kcal Atomic # 6 Polarization: -16.38 SS G_CDS: 5.19 Total: -11.19 kcal Atomic # 7 Polarization: -132.92 SS G_CDS: -6.08 Total: -139.00 kcal Atomic # 14 Polarization: 49.97 SS G_CDS: 2.05 Total: 52.02 kcal Total: -64.14 1.04 -63.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238323169.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.471 kcal (2) G-P(sol) polarization free energy of solvation -64.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds