Wall clock time and date at job start Mon Mar 30 2020 02:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.48542 * 110.99849 * 2 1 4 4 C 1.54935 * 103.22830 * 200.28067 * 3 2 1 5 5 C 1.54597 * 102.91874 * 37.41211 * 4 3 2 6 6 H 1.09002 * 110.39160 * 219.08238 * 5 4 3 7 7 N 1.46500 * 110.30795 * 96.96150 * 5 4 3 8 8 C 1.34506 * 125.67713 * 277.83012 * 7 5 4 9 9 C 1.39272 * 107.19056 * 180.02562 * 8 7 5 10 10 C 1.41596 * 126.56030 * 179.97438 * 9 8 7 11 11 H 1.08005 * 119.99682 * 359.72069 * 10 9 8 12 12 C 1.39695 * 120.00492 * 179.97438 * 10 9 8 13 13 N 1.31028 * 119.99695 * 359.72034 * 12 10 9 14 14 Si 1.86798 * 119.99989 * 179.72601 * 12 10 9 15 15 H 1.48493 * 109.47326 * 90.00144 * 14 12 10 16 16 H 1.48506 * 109.46545 * 209.99894 * 14 12 10 17 17 H 1.48498 * 109.47210 * 329.99605 * 14 12 10 18 18 C 1.41890 * 106.88609 * 0.23536 * 9 8 7 19 19 N 1.30314 * 108.04282 * 359.59543 * 18 9 8 20 20 C 1.47897 * 111.00012 * 242.60558 * 2 1 3 21 21 H 1.08998 * 109.46752 * 177.39642 * 1 2 3 22 22 H 1.09003 * 109.47068 * 297.39255 * 1 2 3 23 23 H 1.08994 * 109.47368 * 57.39764 * 1 2 3 24 24 H 1.08999 * 110.66692 * 318.71765 * 3 2 1 25 25 H 1.09002 * 110.66597 * 81.84009 * 3 2 1 26 26 H 1.08998 * 110.72028 * 279.05635 * 4 3 2 27 27 H 1.08995 * 110.72166 * 155.77061 * 4 3 2 28 28 H 1.08008 * 126.40127 * 0.03764 * 8 7 5 29 29 H 0.97000 * 120.00241 * 179.97438 * 13 12 10 30 30 H 1.08000 * 125.97411 * 179.73394 * 18 9 8 31 31 H 1.09005 * 109.91809 * 26.49024 * 20 2 1 32 32 H 1.09002 * 110.08360 * 265.28526 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3868 0.0000 4 6 3.4492 1.2108 -0.5228 5 6 3.2982 0.1055 -1.5931 6 1 4.1468 -0.5777 -1.5557 7 7 3.1844 0.7012 -2.9266 8 6 2.0586 1.1965 -3.4711 9 6 2.3863 1.6617 -4.7422 10 6 1.5054 2.2639 -5.6730 11 1 0.4630 2.3955 -5.4228 12 6 1.9834 2.6831 -6.9169 13 7 3.2481 2.5240 -7.2203 14 14 0.8195 3.4706 -8.1477 15 1 0.7983 4.9405 -7.9385 16 1 1.2828 3.1735 -9.5270 17 1 -0.5477 2.9235 -7.9561 18 6 3.7704 1.4113 -4.9287 19 7 4.2283 0.8490 -3.8459 20 6 1.9991 -0.6353 -1.2259 21 1 -0.3633 -1.0266 -0.0467 22 1 -0.3633 0.4728 0.9125 23 1 -0.3634 0.5537 -0.8657 24 1 1.4237 2.0205 -0.6729 25 1 2.0040 1.7978 1.0096 26 1 4.1115 0.8838 0.2787 27 1 3.8122 2.1353 -0.9716 28 1 1.0830 1.2278 -3.0087 29 1 3.5800 2.8147 -8.0841 30 1 4.3445 1.6477 -5.8124 31 1 1.2758 -0.5402 -2.0359 32 1 2.2117 -1.6881 -1.0399 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000257828940.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:28 Heat of formation + Delta-G solvation = 81.949598 kcal Electronic energy + Delta-G solvation = -15044.546963 eV Core-core repulsion = 12620.758544 eV Total energy + Delta-G solvation = -2423.788419 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.78500 -38.01439 -33.62491 -32.39588 -29.76988 -28.98491 -27.74501 -25.60212 -24.37846 -21.19784 -21.10904 -19.45807 -18.60273 -17.30736 -15.76040 -15.70173 -14.82546 -14.22721 -14.09767 -13.59803 -13.24451 -12.74837 -12.60987 -12.37102 -11.45475 -11.40744 -11.32062 -11.24729 -11.15801 -11.00286 -10.87502 -10.68910 -10.38482 -10.00007 -9.22750 -8.82693 -8.40772 -7.78904 -7.15140 -6.42708 -3.99384 3.04445 3.19766 3.23553 3.42025 3.73432 4.13605 4.24392 4.41889 4.74009 4.90500 5.25354 5.43107 5.46579 5.54641 5.61131 5.63021 5.77739 5.87131 5.98929 6.07698 6.13650 6.27557 6.44860 6.83249 6.91554 7.02956 7.32511 7.53283 7.68767 8.15824 8.56100 8.66569 9.06798 9.17497 9.52506 10.56852 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.041254 B = 0.007461 C = 0.006696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.555753 B = 3751.969779 C = 4180.821944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.521 5.521 3 C 0.034 3.966 4 C -0.134 4.134 5 C 0.168 3.832 6 H 0.094 0.906 7 N -0.388 5.388 8 C -0.123 4.123 9 C -0.018 4.018 10 C -0.438 4.438 11 H 0.066 0.934 12 C 0.066 3.934 13 N -0.842 5.842 14 Si 0.914 3.086 15 H -0.274 1.274 16 H -0.280 1.280 17 H -0.268 1.268 18 C 0.031 3.969 19 N -0.338 5.338 20 C 0.024 3.976 21 H 0.067 0.933 22 H 0.067 0.933 23 H 0.031 0.969 24 H 0.050 0.950 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.132 0.868 29 H 0.273 0.727 30 H 0.203 0.797 31 H 0.065 0.935 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.034 -2.552 9.554 10.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.245 5.245 3 C -0.094 4.094 4 C -0.173 4.173 5 C 0.063 3.937 6 H 0.112 0.888 7 N -0.177 5.177 8 C -0.263 4.263 9 C -0.028 4.028 10 C -0.473 4.473 11 H 0.085 0.915 12 C -0.144 4.144 13 N -0.474 5.474 14 Si 0.740 3.260 15 H -0.200 1.200 16 H -0.206 1.206 17 H -0.192 1.192 18 C -0.156 4.156 19 N -0.160 5.160 20 C -0.105 4.105 21 H 0.086 0.914 22 H 0.086 0.914 23 H 0.050 0.950 24 H 0.069 0.931 25 H 0.098 0.902 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.149 0.851 29 H 0.084 0.916 30 H 0.219 0.781 31 H 0.084 0.916 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.762 -3.314 10.493 11.144 hybrid contribution -1.718 1.178 -1.698 2.687 sum -3.480 -2.136 8.795 9.697 Atomic orbital electron populations 1.22512 0.87986 1.01922 1.00976 1.64821 1.08133 1.15243 1.36301 1.23264 0.95447 0.89881 1.00818 1.22965 0.96488 0.99876 0.98018 1.21465 0.97985 0.94000 0.80288 0.88788 1.47502 1.06700 1.51667 1.11814 1.21926 0.91135 1.15454 0.97759 1.18197 0.93108 0.99611 0.91848 1.18719 0.95541 1.35117 0.97900 0.91541 1.25633 0.95312 0.94813 0.98624 1.69453 1.14217 1.41438 1.22322 0.86224 0.80794 0.79578 0.79381 1.20002 1.20585 1.19228 1.25100 0.96027 0.98511 0.96002 1.76563 1.12914 1.25099 1.01425 1.23284 0.96267 0.99117 0.91872 0.91440 0.91408 0.95004 0.93122 0.90174 0.90172 0.90154 0.85061 0.91583 0.78142 0.91636 0.89604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.40 60.07 0.56 0.75 16 2 N -0.52 -7.33 5.55 -238.71 -1.33 -8.66 16 3 C 0.03 0.48 6.56 -1.89 -0.01 0.47 16 4 C -0.13 -2.08 6.78 -24.87 -0.17 -2.25 16 5 C 0.17 2.97 4.07 -66.57 -0.27 2.70 16 6 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 7 N -0.39 -8.82 3.51 -52.60 -0.18 -9.00 16 8 C -0.12 -3.00 10.23 -16.00 -0.16 -3.16 16 9 C -0.02 -0.49 5.93 -106.84 -0.63 -1.12 16 10 C -0.44 -12.10 9.40 -37.76 -0.35 -12.45 16 11 H 0.07 1.77 7.84 -52.48 -0.41 1.35 16 12 C 0.07 1.74 5.49 -17.35 -0.10 1.65 16 13 N -0.84 -22.52 10.33 55.54 0.57 -21.95 16 14 Si 0.91 19.81 29.56 -169.99 -5.02 14.78 16 15 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 16 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 17 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 18 C 0.03 0.85 10.91 -16.80 -0.18 0.66 16 19 N -0.34 -8.69 12.47 30.97 0.39 -8.30 16 20 C 0.02 0.37 6.22 -2.76 -0.02 0.35 16 21 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 22 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 23 H 0.03 0.42 8.00 -51.93 -0.42 0.00 16 24 H 0.05 0.80 7.96 -51.93 -0.41 0.39 16 25 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 27 H 0.08 1.40 8.05 -51.93 -0.42 0.98 16 28 H 0.13 2.95 7.37 -52.48 -0.39 2.57 16 29 H 0.27 6.73 8.30 -40.82 -0.34 6.39 16 30 H 0.20 5.61 5.77 -52.49 -0.30 5.30 16 31 H 0.07 1.14 5.82 -51.93 -0.30 0.83 16 32 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 265.71 15.07 4.00 4.00 Total: -1.00 -29.08 265.71 -7.23 -36.31 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -4.32 Total: 5.23 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: -1.34 Total: -12.41 kcal Atomic # 7 Polarization: -47.36 SS G_CDS: -0.55 Total: -47.91 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -29.08 -7.23 -36.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257828940.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.260 kcal (2) G-P(sol) polarization free energy of solvation -29.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds