Wall clock time and date at job start Mon Mar 30 2020 02:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.48542 * 110.99849 * 2 1 4 4 C 1.54935 * 103.22830 * 200.28067 * 3 2 1 5 5 C 1.54597 * 102.91874 * 37.41211 * 4 3 2 6 6 H 1.09002 * 110.39160 * 219.08238 * 5 4 3 7 7 N 1.46500 * 110.30795 * 96.96150 * 5 4 3 8 8 C 1.34506 * 125.67713 * 277.83012 * 7 5 4 9 9 C 1.39272 * 107.19056 * 180.02562 * 8 7 5 10 10 C 1.41596 * 126.56030 * 179.97438 * 9 8 7 11 11 H 1.08005 * 119.99682 * 359.72069 * 10 9 8 12 12 C 1.39695 * 120.00492 * 179.97438 * 10 9 8 13 13 N 1.31028 * 119.99695 * 359.72034 * 12 10 9 14 14 Si 1.86798 * 119.99989 * 179.72601 * 12 10 9 15 15 H 1.48493 * 109.47326 * 90.00144 * 14 12 10 16 16 H 1.48506 * 109.46545 * 209.99894 * 14 12 10 17 17 H 1.48498 * 109.47210 * 329.99605 * 14 12 10 18 18 C 1.41890 * 106.88609 * 0.23536 * 9 8 7 19 19 N 1.30314 * 108.04282 * 359.59543 * 18 9 8 20 20 C 1.47897 * 111.00012 * 242.60558 * 2 1 3 21 21 H 1.08998 * 109.46752 * 177.39642 * 1 2 3 22 22 H 1.09003 * 109.47068 * 297.39255 * 1 2 3 23 23 H 1.08994 * 109.47368 * 57.39764 * 1 2 3 24 24 H 1.08999 * 110.66692 * 318.71765 * 3 2 1 25 25 H 1.09002 * 110.66597 * 81.84009 * 3 2 1 26 26 H 1.08998 * 110.72028 * 279.05635 * 4 3 2 27 27 H 1.08995 * 110.72166 * 155.77061 * 4 3 2 28 28 H 1.08008 * 126.40127 * 0.03764 * 8 7 5 29 29 H 0.97000 * 120.00241 * 179.97438 * 13 12 10 30 30 H 1.08000 * 125.97411 * 179.73394 * 18 9 8 31 31 H 1.09005 * 109.91809 * 26.49024 * 20 2 1 32 32 H 1.09002 * 110.08360 * 265.28526 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3868 0.0000 4 6 3.4492 1.2108 -0.5228 5 6 3.2982 0.1055 -1.5931 6 1 4.1468 -0.5777 -1.5557 7 7 3.1844 0.7012 -2.9266 8 6 2.0586 1.1965 -3.4711 9 6 2.3863 1.6617 -4.7422 10 6 1.5054 2.2639 -5.6730 11 1 0.4630 2.3955 -5.4228 12 6 1.9834 2.6831 -6.9169 13 7 3.2481 2.5240 -7.2203 14 14 0.8195 3.4706 -8.1477 15 1 0.7983 4.9405 -7.9385 16 1 1.2828 3.1735 -9.5270 17 1 -0.5477 2.9235 -7.9561 18 6 3.7704 1.4113 -4.9287 19 7 4.2283 0.8490 -3.8459 20 6 1.9991 -0.6353 -1.2259 21 1 -0.3633 -1.0266 -0.0467 22 1 -0.3633 0.4728 0.9125 23 1 -0.3634 0.5537 -0.8657 24 1 1.4237 2.0205 -0.6729 25 1 2.0040 1.7978 1.0096 26 1 4.1115 0.8838 0.2787 27 1 3.8122 2.1353 -0.9716 28 1 1.0830 1.2278 -3.0087 29 1 3.5800 2.8147 -8.0841 30 1 4.3445 1.6477 -5.8124 31 1 1.2758 -0.5402 -2.0359 32 1 2.2117 -1.6881 -1.0399 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000257828940.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:27 Heat of formation + Delta-G solvation = 62.393935 kcal Electronic energy + Delta-G solvation = -15045.394960 eV Core-core repulsion = 12620.758544 eV Total energy + Delta-G solvation = -2424.636416 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.52291 -39.47726 -35.49924 -33.89579 -31.24943 -30.97856 -29.22125 -27.14819 -25.96289 -22.81394 -22.37347 -21.37392 -20.34182 -19.16198 -17.35561 -16.98772 -16.64715 -15.65304 -15.43104 -15.13009 -14.90984 -14.44345 -14.06961 -13.76086 -13.21192 -12.96398 -12.87916 -12.65732 -12.50623 -12.48109 -12.41881 -12.26854 -11.97052 -11.75626 -11.14386 -10.84632 -9.76972 -9.53557 -9.14673 -8.37337 -6.04361 1.25910 1.43424 1.54819 1.57006 2.07242 2.32666 2.39115 3.04560 3.43117 3.52784 3.65464 3.97256 4.21287 4.27911 4.38900 4.47459 4.49995 4.59937 4.72288 4.81534 4.95744 4.98140 5.00509 5.08668 5.28975 5.51662 5.67678 5.70740 5.92465 6.09431 6.55678 6.73023 7.06691 7.14607 7.51187 8.63521 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.041254 B = 0.007461 C = 0.006696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.555753 B = 3751.969779 C = 4180.821944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.514 5.514 3 C 0.037 3.963 4 C -0.127 4.127 5 C 0.149 3.851 6 H 0.104 0.896 7 N -0.372 5.372 8 C -0.102 4.102 9 C -0.061 4.061 10 C -0.474 4.474 11 H 0.066 0.934 12 C 0.020 3.980 13 N -0.869 5.869 14 Si 0.988 3.012 15 H -0.268 1.268 16 H -0.272 1.272 17 H -0.263 1.263 18 C 0.002 3.998 19 N -0.350 5.350 20 C 0.031 3.969 21 H 0.080 0.920 22 H 0.088 0.912 23 H 0.019 0.981 24 H 0.031 0.969 25 H 0.108 0.892 26 H 0.110 0.890 27 H 0.057 0.943 28 H 0.151 0.849 29 H 0.279 0.721 30 H 0.189 0.811 31 H 0.046 0.954 32 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.160 -2.840 11.061 12.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.238 5.238 3 C -0.091 4.091 4 C -0.166 4.166 5 C 0.046 3.954 6 H 0.122 0.878 7 N -0.161 5.161 8 C -0.244 4.244 9 C -0.071 4.071 10 C -0.508 4.508 11 H 0.085 0.915 12 C -0.187 4.187 13 N -0.501 5.501 14 Si 0.810 3.190 15 H -0.193 1.193 16 H -0.197 1.197 17 H -0.187 1.187 18 C -0.183 4.183 19 N -0.174 5.174 20 C -0.098 4.098 21 H 0.099 0.901 22 H 0.106 0.894 23 H 0.038 0.962 24 H 0.050 0.950 25 H 0.126 0.874 26 H 0.128 0.872 27 H 0.075 0.925 28 H 0.168 0.832 29 H 0.090 0.910 30 H 0.205 0.795 31 H 0.064 0.936 32 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -2.869 -3.616 12.028 12.884 hybrid contribution -1.346 1.185 -1.975 2.668 sum -4.215 -2.431 10.054 11.169 Atomic orbital electron populations 1.22613 0.86605 1.02889 1.01465 1.64918 1.09367 1.14762 1.34795 1.23289 0.94083 0.89867 1.01848 1.22920 0.98086 0.97844 0.97755 1.22046 0.99870 0.95227 0.78275 0.87819 1.47937 1.05528 1.49755 1.12847 1.22167 0.92124 1.13291 0.96823 1.18596 0.93545 1.01489 0.93488 1.18983 0.95693 1.36905 0.99255 0.91546 1.26524 0.97017 0.95000 1.00153 1.69553 1.15739 1.41841 1.23013 0.85104 0.78491 0.78568 0.76797 1.19322 1.19696 1.18711 1.24887 0.96300 1.00604 0.96533 1.76469 1.13844 1.25405 1.01633 1.23240 0.94424 1.00106 0.92012 0.90146 0.89367 0.96243 0.95044 0.87399 0.87200 0.92466 0.83198 0.91029 0.79522 0.93567 0.87511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.27 9.40 127.69 1.20 1.47 16 2 N -0.51 -12.84 5.55 -909.14 -5.05 -17.89 16 3 C 0.04 0.95 6.56 86.65 0.57 1.51 16 4 C -0.13 -3.65 6.78 31.80 0.22 -3.43 16 5 C 0.15 5.01 4.07 45.87 0.19 5.20 16 6 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 7 N -0.37 -16.84 3.51 -320.32 -1.13 -17.97 16 8 C -0.10 -4.97 10.23 84.53 0.86 -4.11 16 9 C -0.06 -3.47 5.93 -21.30 -0.13 -3.59 16 10 C -0.47 -26.80 9.40 23.45 0.22 -26.58 16 11 H 0.07 3.60 7.84 -2.91 -0.02 3.57 16 12 C 0.02 1.09 5.49 85.16 0.47 1.55 16 13 N -0.87 -47.77 10.33 21.79 0.22 -47.55 16 14 Si 0.99 40.85 29.56 68.60 2.03 42.88 16 15 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 16 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 17 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 18 C 0.00 0.11 10.91 85.82 0.94 1.04 16 19 N -0.35 -18.28 12.47 -55.93 -0.70 -18.98 16 20 C 0.03 0.90 6.22 86.45 0.54 1.44 16 21 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 22 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 23 H 0.02 0.46 8.00 -2.39 -0.02 0.44 16 24 H 0.03 0.94 7.96 -2.39 -0.02 0.92 16 25 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 26 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 27 H 0.06 1.93 8.05 -2.39 -0.02 1.91 16 28 H 0.15 6.67 7.37 -2.91 -0.02 6.65 16 29 H 0.28 14.03 8.30 -92.71 -0.77 13.26 16 30 H 0.19 11.00 5.77 -2.91 -0.02 10.99 16 31 H 0.05 1.52 5.82 -2.38 -0.01 1.51 16 32 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 Total: -1.00 -63.55 265.71 1.56 -61.99 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: 1.10 Total: 23.01 kcal Atomic # 6 Polarization: -30.57 SS G_CDS: 5.07 Total: -25.49 kcal Atomic # 7 Polarization: -95.74 SS G_CDS: -6.65 Total: -102.38 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 2.03 Total: 42.88 kcal Total: -63.55 1.56 -61.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257828940.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.386 kcal (2) G-P(sol) polarization free energy of solvation -63.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds