Wall clock time and date at job start Mon Mar 30 2020 02:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.48559 * 111.00210 * 2 1 4 4 C 1.54379 * 104.59383 * 200.95968 * 3 2 1 5 5 C 1.54258 * 105.06106 * 23.84851 * 4 3 2 6 6 H 1.09003 * 110.32293 * 119.00016 * 5 4 3 7 7 N 1.46501 * 110.32227 * 241.10220 * 5 4 3 8 8 C 1.34503 * 125.67284 * 83.57588 * 7 5 4 9 9 C 1.39285 * 107.18677 * 179.97438 * 8 7 5 10 10 C 1.41592 * 126.55400 * 179.97438 * 9 8 7 11 11 H 1.08004 * 120.00508 * 0.02562 * 10 9 8 12 12 C 1.39696 * 119.99825 * 180.02562 * 10 9 8 13 13 N 1.31028 * 120.00147 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 120.00240 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47124 * 89.99946 * 14 12 10 16 16 H 1.48500 * 109.47129 * 209.99866 * 14 12 10 17 17 H 1.48504 * 109.46677 * 329.99764 * 14 12 10 18 18 C 1.41877 * 106.88715 * 0.02562 * 9 8 7 19 19 N 1.30328 * 108.04677 * 359.97438 * 18 9 8 20 20 C 1.48818 * 110.97553 * 244.57439 * 2 1 3 21 21 H 1.08999 * 109.46889 * 60.13063 * 1 2 3 22 22 H 1.08999 * 109.47150 * 180.12811 * 1 2 3 23 23 H 1.09004 * 109.46960 * 300.13170 * 1 2 3 24 24 H 1.08996 * 110.41840 * 82.18005 * 3 2 1 25 25 H 1.09007 * 110.41072 * 319.73278 * 3 2 1 26 26 H 1.09006 * 110.32522 * 264.95108 * 4 3 2 27 27 H 1.09001 * 110.32738 * 142.74946 * 4 3 2 28 28 H 1.07998 * 126.40572 * 0.25983 * 8 7 5 29 29 H 0.96997 * 120.00734 * 180.02562 * 13 12 10 30 30 H 1.07994 * 125.98270 * 179.97438 * 18 9 8 31 31 H 1.09004 * 110.44786 * 40.32702 * 20 2 1 32 32 H 1.09001 * 110.49886 * 277.80200 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4432 1.2500 -0.5344 5 6 3.4432 -0.0541 -1.3584 6 1 3.6954 0.1550 -2.3980 7 7 4.3909 -1.0155 -0.7893 8 6 4.1414 -1.8498 0.2358 9 6 5.3016 -2.5880 0.4574 10 6 5.4903 -3.5866 1.4433 11 1 4.6847 -3.8398 2.1167 12 6 6.7185 -4.2444 1.5450 13 7 7.6960 -3.9369 0.7284 14 14 6.9674 -5.5624 2.8452 15 1 6.5865 -6.8853 2.2882 16 1 8.3944 -5.5902 3.2550 17 1 6.1190 -5.2594 4.0258 18 6 6.2584 -2.1471 -0.4929 19 7 5.7055 -1.2188 -1.2216 20 6 2.0017 -0.5966 -1.2550 21 1 -0.3633 0.5118 -0.8912 22 1 -0.3633 -1.0276 0.0023 23 1 -0.3633 0.5159 0.8888 24 1 2.0079 1.7917 1.0120 25 1 1.4099 2.0212 -0.6603 26 1 4.1484 1.1748 0.2935 27 1 3.6938 2.0994 -1.1699 28 1 3.2134 -1.9350 0.7817 29 1 8.5487 -4.3938 0.7987 30 1 7.2682 -2.5161 -0.5946 31 1 1.4109 -0.2720 -2.1116 32 1 2.0089 -1.6845 -1.1874 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000257828941.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:30 Heat of formation + Delta-G solvation = 62.626087 kcal Electronic energy + Delta-G solvation = -14978.777665 eV Core-core repulsion = 12554.151316 eV Total energy + Delta-G solvation = -2424.626349 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.38364 -39.44463 -35.43560 -33.86698 -31.25393 -30.88911 -29.04259 -27.10216 -25.92692 -22.76274 -22.14997 -21.44947 -20.27198 -19.10790 -17.22643 -16.79611 -16.57007 -16.00477 -15.36705 -14.99006 -14.71382 -14.47590 -13.94290 -13.36281 -13.22219 -12.98505 -12.85583 -12.67894 -12.58806 -12.49733 -12.33256 -12.10139 -11.93838 -11.70452 -11.09784 -10.76618 -9.68272 -9.41575 -9.06673 -8.30765 -5.96465 1.32995 1.45474 1.58525 1.61700 2.19760 2.37173 2.45198 3.03348 3.47138 3.59204 3.71707 4.09175 4.18436 4.25887 4.45271 4.51276 4.62212 4.63848 4.77237 4.80919 4.93217 5.02928 5.04995 5.15795 5.37729 5.62510 5.77727 5.79586 6.06292 6.16626 6.63390 6.82312 7.15661 7.21760 7.60046 8.70515 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.042847 B = 0.007245 C = 0.006538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.335522 B = 3863.777866 C = 4281.880296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.537 5.537 3 C 0.042 3.958 4 C -0.132 4.132 5 C 0.154 3.846 6 H 0.103 0.897 7 N -0.369 5.369 8 C -0.077 4.077 9 C -0.075 4.075 10 C -0.473 4.473 11 H 0.065 0.935 12 C 0.018 3.982 13 N -0.874 5.874 14 Si 0.987 3.013 15 H -0.268 1.268 16 H -0.273 1.273 17 H -0.264 1.264 18 C 0.002 3.998 19 N -0.359 5.359 20 C 0.035 3.965 21 H 0.045 0.955 22 H 0.068 0.932 23 H 0.079 0.921 24 H 0.085 0.915 25 H 0.073 0.927 26 H 0.049 0.951 27 H 0.100 0.900 28 H 0.159 0.841 29 H 0.277 0.723 30 H 0.186 0.814 31 H 0.087 0.913 32 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.891 7.880 -2.013 14.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.262 5.262 3 C -0.085 4.085 4 C -0.171 4.171 5 C 0.051 3.949 6 H 0.121 0.879 7 N -0.156 5.156 8 C -0.221 4.221 9 C -0.085 4.085 10 C -0.507 4.507 11 H 0.083 0.917 12 C -0.188 4.188 13 N -0.507 5.507 14 Si 0.810 3.190 15 H -0.193 1.193 16 H -0.198 1.198 17 H -0.188 1.188 18 C -0.183 4.183 19 N -0.183 5.183 20 C -0.094 4.094 21 H 0.063 0.937 22 H 0.086 0.914 23 H 0.097 0.903 24 H 0.103 0.897 25 H 0.091 0.909 26 H 0.067 0.933 27 H 0.118 0.882 28 H 0.177 0.823 29 H 0.087 0.913 30 H 0.203 0.797 31 H 0.105 0.895 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.447 8.395 -2.559 14.424 hybrid contribution 0.070 -0.841 0.529 0.996 sum -11.377 7.554 -2.030 13.807 Atomic orbital electron populations 1.22541 0.86056 1.02688 1.01918 1.65396 1.10020 1.16172 1.34631 1.23113 0.93541 0.89845 1.02025 1.22792 0.97931 0.96715 0.99654 1.21980 0.87196 0.87729 0.97995 0.87946 1.47894 1.09190 1.31468 1.27095 1.22420 1.00339 1.00591 0.98714 1.18634 0.91934 0.99234 0.98667 1.18975 0.98621 1.18117 1.15015 0.91671 1.26496 0.94737 0.99292 0.98277 1.69564 1.04186 1.40323 1.36632 0.85121 0.77851 0.77851 0.78205 1.19326 1.19807 1.18782 1.24837 1.01573 0.95923 0.95939 1.76454 0.92771 1.22919 1.26169 1.23416 0.92602 1.00525 0.92840 0.93693 0.91354 0.90264 0.89680 0.90865 0.93254 0.88199 0.82349 0.91254 0.79730 0.89470 0.91010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.53 127.69 1.22 1.52 16 2 N -0.54 -14.01 5.54 -906.92 -5.03 -19.03 16 3 C 0.04 0.96 6.49 86.45 0.56 1.52 16 4 C -0.13 -3.73 6.79 31.49 0.21 -3.52 16 5 C 0.15 5.14 4.14 45.88 0.19 5.33 16 6 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 7 N -0.37 -17.06 3.45 -320.25 -1.10 -18.16 16 8 C -0.08 -3.91 10.29 84.54 0.87 -3.04 16 9 C -0.07 -4.36 5.93 -21.30 -0.13 -4.48 16 10 C -0.47 -27.56 9.40 23.45 0.22 -27.34 16 11 H 0.07 3.66 7.84 -2.91 -0.02 3.63 16 12 C 0.02 1.00 5.49 85.17 0.47 1.47 16 13 N -0.87 -49.33 10.32 21.79 0.22 -49.10 16 14 Si 0.99 42.09 29.56 68.60 2.03 44.12 16 15 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 16 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 17 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 18 C 0.00 0.10 10.91 85.82 0.94 1.04 16 19 N -0.36 -19.11 12.47 -55.94 -0.70 -19.81 16 20 C 0.04 0.97 5.48 86.40 0.47 1.44 16 21 H 0.04 0.68 7.98 -2.39 -0.02 0.66 16 22 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 23 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.07 1.23 7.97 -2.38 -0.02 1.21 16 26 H 0.05 1.75 7.95 -2.38 -0.02 1.73 16 27 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.16 7.52 7.66 -2.91 -0.02 7.49 16 29 H 0.28 14.31 8.30 -92.71 -0.77 13.54 16 30 H 0.19 11.15 5.77 -2.91 -0.02 11.13 16 31 H 0.09 1.83 7.91 -2.38 -0.02 1.81 16 32 H 0.07 2.34 7.35 -2.39 -0.02 2.33 16 Total: -1.00 -67.21 266.55 1.55 -65.66 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: 1.10 Total: 22.40 kcal Atomic # 6 Polarization: -31.09 SS G_CDS: 5.02 Total: -26.07 kcal Atomic # 7 Polarization: -99.50 SS G_CDS: -6.60 Total: -106.11 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -67.21 1.55 -65.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257828941.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.283 kcal (2) G-P(sol) polarization free energy of solvation -67.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds