Wall clock time and date at job start Mon Mar 30 2020 02:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46896 * 109.47253 * 2 1 4 4 C 1.47956 * 111.00026 * 189.99816 * 3 2 1 5 5 C 1.53934 * 86.18118 * 222.41941 * 4 3 2 6 6 N 1.46500 * 113.73269 * 138.08118 * 5 4 3 7 7 N 1.40026 * 126.20224 * 299.97275 * 6 5 4 8 8 C 1.31237 * 109.11097 * 179.97438 * 7 6 5 9 9 C 1.38710 * 109.07966 * 0.02562 * 8 7 6 10 10 C 1.37469 * 126.20235 * 120.24644 * 6 5 4 11 11 C 1.40229 * 126.66286 * 359.97438 * 10 6 5 12 12 H 1.08008 * 119.99910 * 0.18991 * 11 10 6 13 13 C 1.40163 * 120.00258 * 180.18500 * 11 10 6 14 14 N 1.30764 * 119.99837 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00143 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.47280 * 90.00393 * 15 13 11 17 17 H 1.48505 * 109.47307 * 210.00134 * 15 13 11 18 18 H 1.48500 * 109.47242 * 330.00178 * 15 13 11 19 19 C 1.47966 * 110.99891 * 90.63933 * 3 2 1 20 20 H 1.09004 * 109.47357 * 300.00153 * 1 2 3 21 21 H 1.08997 * 109.47335 * 59.99607 * 1 2 3 22 22 H 1.09001 * 109.47777 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.46634 * 240.00273 * 2 1 3 24 24 H 1.09000 * 109.46990 * 119.99994 * 2 1 3 25 25 H 1.09000 * 113.75906 * 108.10450 * 4 3 2 26 26 H 1.08994 * 113.86260 * 336.74921 * 4 3 2 27 27 H 1.09001 * 113.73314 * 269.25619 * 5 4 3 28 28 H 1.08002 * 125.46236 * 179.97438 * 8 7 6 29 29 H 1.08002 * 126.22932 * 179.97438 * 9 8 7 30 30 H 0.97001 * 119.99859 * 179.97438 * 14 13 11 31 31 H 1.08998 * 113.75646 * 23.26777 * 19 3 2 32 32 H 1.08997 * 113.75918 * 251.90324 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4789 1.4314 -0.2398 5 6 3.5230 2.4996 0.8677 6 7 4.6495 2.3450 1.7915 7 7 4.9095 1.2315 2.5996 8 6 6.0027 1.4492 3.2924 9 6 6.5007 2.7034 2.9712 10 6 5.6399 3.2691 2.0260 11 6 5.7647 4.5322 1.4299 12 1 5.0330 4.8632 0.7077 13 6 6.8390 5.3652 1.7713 14 7 7.7252 4.9642 2.6453 15 14 7.0057 7.0475 0.9767 16 1 6.2867 8.0556 1.7963 17 1 8.4423 7.4138 0.8898 18 1 6.4209 7.0106 -0.3878 19 6 2.2110 1.8797 1.3813 20 1 -0.3634 0.5139 0.8900 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3635 -1.0276 -0.0005 23 1 1.8932 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 3.7502 1.8094 -1.2255 26 1 3.9979 0.5086 0.0192 27 1 3.4133 3.5192 0.4983 28 1 6.4434 0.7624 3.9998 29 1 7.3893 3.1612 3.3801 30 1 8.4689 5.5406 2.8813 31 1 2.3575 1.0873 2.1152 32 1 1.4691 2.6158 1.6908 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000257851845.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:05 Heat of formation + Delta-G solvation = 99.494047 kcal Electronic energy + Delta-G solvation = -14931.663673 eV Core-core repulsion = 12508.636039 eV Total energy + Delta-G solvation = -2423.027634 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.82460 -38.24433 -33.65753 -32.77586 -30.15099 -28.52441 -25.95705 -25.54320 -25.06471 -21.89596 -20.26528 -19.64434 -18.12263 -17.14971 -15.69524 -15.55075 -14.99768 -14.54557 -13.68397 -13.56109 -12.84985 -12.53961 -12.33352 -12.13169 -11.87304 -11.81276 -11.54766 -11.37037 -11.30169 -10.81081 -10.54966 -10.40460 -10.14936 -9.80491 -9.46212 -8.72599 -8.57855 -7.78374 -6.79071 -6.64143 -4.47464 2.92585 3.06253 3.09859 3.57377 3.79638 3.97754 4.45582 4.53579 4.97556 5.13331 5.19036 5.35204 5.48651 5.57178 5.68086 5.82528 5.86954 6.00387 6.07726 6.13894 6.22585 6.37653 6.54442 6.58549 7.04360 7.27394 7.34729 7.49469 7.85952 8.11812 8.48637 8.70791 8.85274 9.21156 9.64934 10.24414 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.037243 B = 0.007758 C = 0.006670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.638122 B = 3608.322917 C = 4197.137584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.018 3.982 3 N -0.482 5.482 4 C -0.006 4.006 5 C 0.161 3.839 6 N -0.422 5.422 7 N -0.398 5.398 8 C 0.040 3.960 9 C -0.361 4.361 10 C 0.253 3.747 11 C -0.449 4.449 12 H 0.074 0.926 13 C 0.077 3.923 14 N -0.785 5.785 15 Si 0.923 3.077 16 H -0.269 1.269 17 H -0.276 1.276 18 H -0.263 1.263 19 C 0.000 4.000 20 H 0.052 0.948 21 H 0.059 0.941 22 H 0.053 0.947 23 H 0.067 0.933 24 H 0.045 0.955 25 H 0.087 0.913 26 H 0.076 0.924 27 H 0.117 0.883 28 H 0.144 0.856 29 H 0.158 0.842 30 H 0.278 0.722 31 H 0.084 0.916 32 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.613 -2.693 -3.834 8.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.111 4.111 3 N -0.205 5.205 4 C -0.136 4.136 5 C 0.056 3.944 6 N -0.210 5.210 7 N -0.221 5.221 8 C -0.140 4.140 9 C -0.392 4.392 10 C 0.135 3.865 11 C -0.485 4.485 12 H 0.092 0.908 13 C -0.142 4.142 14 N -0.412 5.412 15 Si 0.747 3.253 16 H -0.194 1.194 17 H -0.201 1.201 18 H -0.187 1.187 19 C -0.130 4.130 20 H 0.072 0.928 21 H 0.078 0.922 22 H 0.072 0.928 23 H 0.086 0.914 24 H 0.064 0.936 25 H 0.105 0.895 26 H 0.094 0.906 27 H 0.135 0.865 28 H 0.161 0.839 29 H 0.175 0.825 30 H 0.089 0.911 31 H 0.102 0.898 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.878 -3.178 -4.447 9.588 hybrid contribution 1.307 0.768 0.389 1.565 sum -6.571 -2.410 -4.057 8.090 Atomic orbital electron populations 1.21654 0.94990 1.00887 1.02258 1.22569 0.96474 0.90896 1.01124 1.68418 1.14568 1.18900 1.18651 1.24425 0.88903 1.00027 1.00251 1.22514 0.84192 0.99354 0.88385 1.48481 1.21952 1.13977 1.36638 1.76756 1.21501 1.09569 1.14230 1.23125 0.94618 0.97602 0.98674 1.22149 1.08433 0.96861 1.11782 1.18807 0.86013 0.89065 0.92662 1.18622 1.09247 0.98044 1.22627 0.90770 1.25749 0.94368 1.00112 0.93982 1.69738 1.10062 1.36182 1.25235 0.86078 0.78223 0.80819 0.80170 1.19429 1.20100 1.18675 1.24407 0.96828 1.00319 0.91412 0.92843 0.92212 0.92811 0.91407 0.93643 0.89497 0.90556 0.86500 0.83873 0.82510 0.91078 0.89771 0.89766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 10.22 37.16 0.38 -1.28 16 2 C 0.02 0.26 5.52 -3.83 -0.02 0.24 16 3 N -0.48 -7.88 6.16 -238.47 -1.47 -9.35 16 4 C -0.01 -0.11 7.74 -2.77 -0.02 -0.13 16 5 C 0.16 3.30 4.77 -69.63 -0.33 2.97 16 6 N -0.42 -10.47 3.78 -53.29 -0.20 -10.68 16 7 N -0.40 -10.04 11.94 30.45 0.36 -9.67 16 8 C 0.04 1.01 11.93 -17.63 -0.21 0.80 16 9 C -0.36 -9.91 9.77 -38.82 -0.38 -10.29 16 10 C 0.25 6.91 6.75 -84.00 -0.57 6.35 16 11 C -0.45 -11.80 9.07 -38.11 -0.35 -12.15 16 12 H 0.07 1.83 6.94 -52.48 -0.36 1.46 16 13 C 0.08 1.92 5.50 -17.28 -0.10 1.83 16 14 N -0.79 -20.18 10.30 55.56 0.57 -19.61 16 15 Si 0.92 18.47 29.56 -169.99 -5.03 13.45 16 16 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 17 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 18 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 19 C 0.00 0.00 7.64 -2.77 -0.02 -0.02 16 20 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 21 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16 24 H 0.05 0.69 7.38 -51.93 -0.38 0.30 16 25 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 26 H 0.08 1.48 7.93 -51.93 -0.41 1.07 16 27 H 0.12 2.34 7.08 -51.93 -0.37 1.98 16 28 H 0.14 3.08 8.06 -52.49 -0.42 2.66 16 29 H 0.16 4.43 5.73 -52.49 -0.30 4.13 16 30 H 0.28 6.46 8.29 -40.82 -0.34 6.12 16 31 H 0.08 1.63 7.04 -51.93 -0.37 1.26 16 32 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 269.21 15.07 4.06 4.06 Total: -1.00 -28.52 269.21 -7.60 -36.12 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -4.28 Total: 7.38 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: -1.61 Total: -11.70 kcal Atomic # 7 Polarization: -48.58 SS G_CDS: -0.73 Total: -49.31 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.03 Total: 13.45 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -28.52 -7.60 -36.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257851845.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.617 kcal (2) G-P(sol) polarization free energy of solvation -28.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds