Wall clock time and date at job start Mon Mar 30 2020 02:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.48564 * 110.99885 * 2 1 4 4 C 1.54372 * 104.59495 * 200.96168 * 3 2 1 5 5 C 1.54263 * 105.06326 * 23.85356 * 4 3 2 6 6 H 1.08998 * 110.32510 * 241.00457 * 5 4 3 7 7 N 1.46503 * 110.32482 * 118.89510 * 5 4 3 8 8 N 1.40025 * 126.20021 * 301.57189 * 7 5 4 9 9 C 1.31238 * 109.10361 * 180.27232 * 8 7 5 10 10 C 1.38697 * 109.08500 * 359.75871 * 9 8 7 11 11 C 1.37459 * 126.20132 * 121.42935 * 7 5 4 12 12 C 1.40231 * 126.66125 * 0.02562 * 11 7 5 13 13 H 1.07998 * 120.00031 * 340.78905 * 12 11 7 14 14 C 1.40168 * 120.00000 * 161.06784 * 12 11 7 15 15 N 1.30758 * 120.00101 * 163.89395 * 14 12 11 16 16 Si 1.86805 * 119.99716 * 343.88557 * 14 12 11 17 17 H 1.48501 * 109.46745 * 91.52222 * 16 14 12 18 18 H 1.48502 * 109.46807 * 211.51721 * 16 14 12 19 19 H 1.48497 * 109.47156 * 331.52333 * 16 14 12 20 20 C 1.48723 * 111.01546 * 244.49323 * 2 1 3 21 21 H 1.08997 * 109.47490 * 60.12409 * 1 2 3 22 22 H 1.08998 * 109.47437 * 180.12588 * 1 2 3 23 23 H 1.09003 * 109.47444 * 300.12647 * 1 2 3 24 24 H 1.09004 * 110.40747 * 82.18306 * 3 2 1 25 25 H 1.09002 * 110.41414 * 319.74338 * 3 2 1 26 26 H 1.09009 * 110.32742 * 264.95565 * 4 3 2 27 27 H 1.08998 * 110.32645 * 142.75125 * 4 3 2 28 28 H 1.08009 * 125.45517 * 179.72185 * 9 8 7 29 29 H 1.08001 * 126.23014 * 179.97438 * 10 9 8 30 30 H 0.97006 * 119.99975 * 179.97438 * 15 14 12 31 31 H 1.09003 * 110.38510 * 40.24314 * 20 2 1 32 32 H 1.08992 * 110.50808 * 277.75229 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0013 1.3870 0.0000 4 6 3.4431 1.2502 -0.5344 5 6 3.4432 -0.0538 -1.3586 6 1 4.1495 -0.7685 -0.9363 7 7 3.7797 0.2277 -2.7564 8 7 3.0866 1.0879 -3.6168 9 6 3.6728 1.0849 -4.7910 10 6 4.7680 0.2349 -4.7489 11 6 4.8346 -0.3027 -3.4601 12 6 5.7886 -1.2117 -2.9804 13 1 5.9362 -1.3287 -1.9170 14 6 6.5548 -1.9642 -3.8812 15 7 7.6412 -2.5659 -3.4719 16 14 6.0236 -2.1077 -5.6664 17 1 6.6618 -1.0276 -6.4610 18 1 6.4403 -3.4286 -6.2021 19 1 4.5467 -1.9809 -5.7551 20 6 2.0023 -0.5978 -1.2530 21 1 -0.3634 0.5119 -0.8910 22 1 -0.3634 -1.0276 0.0023 23 1 -0.3634 0.5158 0.8889 24 1 2.0078 1.7916 1.0121 25 1 1.4097 2.0213 -0.6601 26 1 4.1483 1.1749 0.2934 27 1 3.6935 2.0997 -1.1699 28 1 3.3532 1.6529 -5.6523 29 1 5.4456 0.0261 -5.5636 30 1 8.1712 -3.0870 -4.0952 31 1 1.4104 -0.2751 -2.1096 32 1 2.0107 -1.6855 -1.1837 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000257856819.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:32 Heat of formation + Delta-G solvation = 75.358451 kcal Electronic energy + Delta-G solvation = -15203.299553 eV Core-core repulsion = 12779.225320 eV Total energy + Delta-G solvation = -2424.074232 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.56917 -38.02868 -33.62749 -32.70028 -30.16410 -29.41816 -27.58828 -25.15906 -24.86433 -21.30843 -20.91451 -20.21963 -18.49309 -17.12061 -15.95982 -15.65034 -14.91382 -14.21118 -13.89334 -13.64091 -13.25847 -13.10923 -12.64454 -12.46272 -11.90960 -11.65700 -11.43045 -11.30918 -11.08670 -10.92775 -10.88627 -10.44291 -10.21291 -9.76364 -9.33936 -8.99488 -8.36787 -8.02957 -7.17017 -6.97252 -4.62118 2.96581 3.19936 3.33778 3.47064 3.72148 4.04161 4.14156 4.38646 4.91226 4.98092 5.18562 5.37301 5.47680 5.58155 5.64034 5.74367 5.89946 5.91634 6.08188 6.17567 6.26727 6.38529 6.46029 6.78132 6.90921 6.99419 7.13497 7.17426 7.37109 7.82388 8.19304 8.23635 8.53795 8.91130 9.33280 10.04433 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.038838 B = 0.008797 C = 0.008128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.771257 B = 3182.183977 C = 3443.976863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.517 5.517 3 C 0.038 3.962 4 C -0.132 4.132 5 C 0.181 3.819 6 H 0.106 0.894 7 N -0.418 5.418 8 N -0.381 5.381 9 C 0.067 3.933 10 C -0.428 4.428 11 C 0.261 3.739 12 C -0.450 4.450 13 H 0.090 0.910 14 C 0.100 3.900 15 N -0.806 5.806 16 Si 0.925 3.075 17 H -0.270 1.270 18 H -0.298 1.298 19 H -0.243 1.243 20 C 0.027 3.973 21 H 0.028 0.972 22 H 0.067 0.933 23 H 0.065 0.935 24 H 0.077 0.923 25 H 0.045 0.955 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.150 0.850 29 H 0.117 0.883 30 H 0.288 0.712 31 H 0.060 0.940 32 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.746 2.795 3.323 8.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.241 5.241 3 C -0.091 4.091 4 C -0.171 4.171 5 C 0.076 3.924 6 H 0.124 0.876 7 N -0.206 5.206 8 N -0.202 5.202 9 C -0.116 4.116 10 C -0.458 4.458 11 C 0.141 3.859 12 C -0.486 4.486 13 H 0.108 0.892 14 C -0.122 4.122 15 N -0.431 5.431 16 Si 0.753 3.247 17 H -0.196 1.196 18 H -0.227 1.227 19 H -0.166 1.166 20 C -0.102 4.102 21 H 0.047 0.953 22 H 0.085 0.915 23 H 0.084 0.916 24 H 0.095 0.905 25 H 0.064 0.936 26 H 0.092 0.908 27 H 0.098 0.902 28 H 0.167 0.833 29 H 0.134 0.866 30 H 0.098 0.902 31 H 0.078 0.922 32 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.419 2.836 4.604 10.006 hybrid contribution 0.409 -0.002 -2.006 2.047 sum -8.011 2.834 2.598 8.885 Atomic orbital electron populations 1.22467 0.88372 1.01928 1.00543 1.65400 1.07955 1.15527 1.35190 1.23055 0.95532 0.90078 1.00386 1.22683 0.96203 0.98709 0.99462 1.21398 0.96060 0.96350 0.78583 0.87643 1.48518 1.22888 1.40196 1.08951 1.76829 1.22700 1.19435 1.01272 1.22858 0.95156 0.98265 0.95317 1.21053 1.09352 1.16572 0.98822 1.18772 0.86380 0.91148 0.89580 1.18438 1.14488 1.19325 0.96355 0.89184 1.25911 0.92243 0.92299 1.01699 1.69594 1.10560 1.24220 1.38751 0.86138 0.82206 0.75693 0.80643 1.19635 1.22662 1.16597 1.23488 0.95471 0.99984 0.91230 0.95342 0.91458 0.91575 0.90497 0.93636 0.90792 0.90211 0.83260 0.86585 0.90168 0.92160 0.89915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.53 60.06 0.57 0.78 16 2 N -0.52 -8.03 5.66 -238.09 -1.35 -9.38 16 3 C 0.04 0.57 6.50 -2.18 -0.01 0.55 16 4 C -0.13 -2.28 6.73 -25.35 -0.17 -2.45 16 5 C 0.18 3.62 3.87 -66.55 -0.26 3.36 16 6 H 0.11 2.16 6.93 -51.93 -0.36 1.80 16 7 N -0.42 -9.91 3.32 -50.82 -0.17 -10.08 16 8 N -0.38 -9.06 12.02 30.45 0.37 -8.70 16 9 C 0.07 1.55 11.93 -17.64 -0.21 1.34 16 10 C -0.43 -10.79 8.13 -38.83 -0.32 -11.10 16 11 C 0.26 6.78 6.32 -84.01 -0.53 6.24 16 12 C -0.45 -12.07 9.44 -38.11 -0.36 -12.43 16 13 H 0.09 2.47 7.25 -52.49 -0.38 2.09 16 14 C 0.10 2.61 5.51 -17.28 -0.10 2.52 16 15 N -0.81 -21.12 13.92 55.56 0.77 -20.35 16 16 Si 0.93 21.23 24.53 -169.99 -4.17 17.06 16 17 H -0.27 -6.09 6.70 56.52 0.38 -5.71 16 18 H -0.30 -6.56 7.11 56.52 0.40 -6.15 16 19 H -0.24 -5.78 6.55 56.52 0.37 -5.41 16 20 C 0.03 0.48 6.21 -2.09 -0.01 0.47 16 21 H 0.03 0.37 7.98 -51.93 -0.41 -0.04 16 22 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.05 0.71 7.97 -51.93 -0.41 0.30 16 26 H 0.07 1.17 8.14 -51.92 -0.42 0.74 16 27 H 0.08 1.52 7.87 -51.93 -0.41 1.11 16 28 H 0.15 2.89 8.06 -52.48 -0.42 2.47 16 29 H 0.12 2.87 4.23 -52.49 -0.22 2.65 16 30 H 0.29 6.83 8.30 -40.82 -0.34 6.49 16 31 H 0.06 1.18 7.49 -51.93 -0.39 0.79 16 32 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 260.75 15.07 3.93 3.93 Total: -1.00 -28.54 260.75 -6.32 -34.87 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -4.31 Total: 3.38 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: -1.39 Total: -10.73 kcal Atomic # 7 Polarization: -48.13 SS G_CDS: -0.38 Total: -48.51 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.17 Total: 17.06 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -28.54 -6.32 -34.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257856819.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.227 kcal (2) G-P(sol) polarization free energy of solvation -28.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds