Wall clock time and date at job start Mon Mar 30 2020 02:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.48564 * 110.99885 * 2 1 4 4 C 1.54372 * 104.59495 * 200.96168 * 3 2 1 5 5 C 1.54263 * 105.06326 * 23.85356 * 4 3 2 6 6 H 1.08998 * 110.32510 * 241.00457 * 5 4 3 7 7 N 1.46503 * 110.32482 * 118.89510 * 5 4 3 8 8 N 1.40025 * 126.20021 * 301.57189 * 7 5 4 9 9 C 1.31238 * 109.10361 * 180.27232 * 8 7 5 10 10 C 1.38697 * 109.08500 * 359.75871 * 9 8 7 11 11 C 1.37459 * 126.20132 * 121.42935 * 7 5 4 12 12 C 1.40231 * 126.66125 * 0.02562 * 11 7 5 13 13 H 1.07998 * 120.00031 * 340.78905 * 12 11 7 14 14 C 1.40168 * 120.00000 * 161.06784 * 12 11 7 15 15 N 1.30758 * 120.00101 * 163.89395 * 14 12 11 16 16 Si 1.86805 * 119.99716 * 343.88557 * 14 12 11 17 17 H 1.48501 * 109.46745 * 91.52222 * 16 14 12 18 18 H 1.48502 * 109.46807 * 211.51721 * 16 14 12 19 19 H 1.48497 * 109.47156 * 331.52333 * 16 14 12 20 20 C 1.48723 * 111.01546 * 244.49323 * 2 1 3 21 21 H 1.08997 * 109.47490 * 60.12409 * 1 2 3 22 22 H 1.08998 * 109.47437 * 180.12588 * 1 2 3 23 23 H 1.09003 * 109.47444 * 300.12647 * 1 2 3 24 24 H 1.09004 * 110.40747 * 82.18306 * 3 2 1 25 25 H 1.09002 * 110.41414 * 319.74338 * 3 2 1 26 26 H 1.09009 * 110.32742 * 264.95565 * 4 3 2 27 27 H 1.08998 * 110.32645 * 142.75125 * 4 3 2 28 28 H 1.08009 * 125.45517 * 179.72185 * 9 8 7 29 29 H 1.08001 * 126.23014 * 179.97438 * 10 9 8 30 30 H 0.97006 * 119.99975 * 179.97438 * 15 14 12 31 31 H 1.09003 * 110.38510 * 40.24314 * 20 2 1 32 32 H 1.08992 * 110.50808 * 277.75229 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0013 1.3870 0.0000 4 6 3.4431 1.2502 -0.5344 5 6 3.4432 -0.0538 -1.3586 6 1 4.1495 -0.7685 -0.9363 7 7 3.7797 0.2277 -2.7564 8 7 3.0866 1.0879 -3.6168 9 6 3.6728 1.0849 -4.7910 10 6 4.7680 0.2349 -4.7489 11 6 4.8346 -0.3027 -3.4601 12 6 5.7886 -1.2117 -2.9804 13 1 5.9362 -1.3287 -1.9170 14 6 6.5548 -1.9642 -3.8812 15 7 7.6412 -2.5659 -3.4719 16 14 6.0236 -2.1077 -5.6664 17 1 6.6618 -1.0276 -6.4610 18 1 6.4403 -3.4286 -6.2021 19 1 4.5467 -1.9809 -5.7551 20 6 2.0023 -0.5978 -1.2530 21 1 -0.3634 0.5119 -0.8910 22 1 -0.3634 -1.0276 0.0023 23 1 -0.3634 0.5158 0.8889 24 1 2.0078 1.7916 1.0121 25 1 1.4097 2.0213 -0.6601 26 1 4.1483 1.1749 0.2934 27 1 3.6935 2.0997 -1.1699 28 1 3.3532 1.6529 -5.6523 29 1 5.4456 0.0261 -5.5636 30 1 8.1712 -3.0870 -4.0952 31 1 1.4104 -0.2751 -2.1096 32 1 2.0107 -1.6855 -1.1837 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000257856819.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:32 Heat of formation + Delta-G solvation = 55.221802 kcal Electronic energy + Delta-G solvation = -15204.172743 eV Core-core repulsion = 12779.225320 eV Total energy + Delta-G solvation = -2424.947423 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.34312 -39.48471 -35.60590 -34.19516 -31.98049 -31.02203 -29.10854 -26.94635 -26.31854 -22.91953 -22.29867 -22.04974 -20.23707 -18.98737 -17.83133 -17.00834 -16.46813 -15.72943 -15.50842 -15.28967 -14.99404 -14.56840 -14.29540 -13.96218 -13.59694 -13.46074 -13.01781 -12.66187 -12.49244 -12.47160 -12.32172 -12.20233 -11.82535 -11.64939 -11.25183 -10.88155 -9.92317 -9.62293 -9.07264 -8.94341 -6.64490 1.08777 1.33837 1.50868 1.61158 2.01970 2.16959 2.25566 3.07892 3.09406 3.50398 3.69330 3.96002 4.13816 4.24897 4.42619 4.46885 4.54219 4.61611 4.74528 4.80229 4.91781 4.95495 4.98035 5.03404 5.08951 5.24286 5.42174 5.64102 5.90753 5.94658 6.14650 6.38857 6.54757 6.97037 7.43254 8.12426 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.038838 B = 0.008797 C = 0.008128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.771257 B = 3182.183977 C = 3443.976863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.517 5.517 3 C 0.045 3.955 4 C -0.126 4.126 5 C 0.165 3.835 6 H 0.092 0.908 7 N -0.418 5.418 8 N -0.382 5.382 9 C 0.064 3.936 10 C -0.442 4.442 11 C 0.240 3.760 12 C -0.474 4.474 13 H 0.067 0.933 14 C 0.068 3.932 15 N -0.834 5.834 16 Si 0.978 3.022 17 H -0.261 1.261 18 H -0.281 1.281 19 H -0.257 1.257 20 C 0.038 3.962 21 H 0.024 0.976 22 H 0.076 0.924 23 H 0.090 0.910 24 H 0.106 0.894 25 H 0.042 0.958 26 H 0.088 0.912 27 H 0.061 0.939 28 H 0.190 0.810 29 H 0.120 0.880 30 H 0.299 0.701 31 H 0.043 0.957 32 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.048 3.407 3.160 10.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.241 5.241 3 C -0.082 4.082 4 C -0.165 4.165 5 C 0.062 3.938 6 H 0.110 0.890 7 N -0.206 5.206 8 N -0.203 5.203 9 C -0.119 4.119 10 C -0.472 4.472 11 C 0.119 3.881 12 C -0.510 4.510 13 H 0.085 0.915 14 C -0.151 4.151 15 N -0.461 5.461 16 Si 0.803 3.197 17 H -0.187 1.187 18 H -0.208 1.208 19 H -0.181 1.181 20 C -0.091 4.091 21 H 0.042 0.958 22 H 0.095 0.905 23 H 0.109 0.891 24 H 0.125 0.875 25 H 0.060 0.940 26 H 0.106 0.894 27 H 0.079 0.921 28 H 0.207 0.793 29 H 0.138 0.862 30 H 0.110 0.890 31 H 0.061 0.939 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.724 3.445 4.472 11.244 hybrid contribution 0.765 -0.145 -1.879 2.034 sum -8.959 3.300 2.593 9.894 Atomic orbital electron populations 1.22572 0.86310 1.02973 1.01511 1.65443 1.09864 1.15619 1.33211 1.23065 0.93506 0.89865 1.01807 1.22629 0.98492 0.96261 0.99115 1.21706 0.97059 0.97785 0.77299 0.89016 1.48825 1.22184 1.39513 1.10065 1.76790 1.22786 1.19061 1.01645 1.23446 0.94279 0.97971 0.96191 1.21303 1.10209 1.17045 0.98648 1.18916 0.86967 0.91582 0.90659 1.18447 1.16026 1.20969 0.95579 0.91496 1.26539 0.92081 0.91812 1.04711 1.69597 1.11238 1.24974 1.40280 0.85335 0.80765 0.76668 0.76908 1.18715 1.20795 1.18141 1.23300 0.93800 1.00121 0.91907 0.95759 0.90513 0.89110 0.87537 0.93981 0.89383 0.92068 0.79320 0.86229 0.89035 0.93877 0.89788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.34 9.53 127.69 1.22 1.55 16 2 N -0.52 -15.03 5.66 -907.19 -5.13 -20.16 16 3 C 0.05 1.27 6.50 86.45 0.56 1.83 16 4 C -0.13 -4.27 6.73 31.49 0.21 -4.06 16 5 C 0.17 6.65 3.87 45.89 0.18 6.82 16 6 H 0.09 3.90 6.93 -2.39 -0.02 3.88 16 7 N -0.42 -19.93 3.32 -314.68 -1.05 -20.98 16 8 N -0.38 -17.77 12.02 -57.57 -0.69 -18.46 16 9 C 0.06 2.87 11.93 84.89 1.01 3.89 16 10 C -0.44 -21.95 8.13 22.76 0.18 -21.76 16 11 C 0.24 12.59 6.32 39.12 0.25 12.83 16 12 C -0.47 -26.15 9.44 23.22 0.22 -25.93 16 13 H 0.07 3.86 7.25 -2.91 -0.02 3.84 16 14 C 0.07 3.55 5.51 85.32 0.47 4.02 16 15 N -0.83 -44.19 13.92 21.87 0.30 -43.89 16 16 Si 0.98 43.35 24.53 68.60 1.68 45.03 16 17 H -0.26 -11.14 6.70 99.48 0.67 -10.47 16 18 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 19 H -0.26 -11.94 6.55 99.48 0.65 -11.28 16 20 C 0.04 1.33 6.21 86.42 0.54 1.87 16 21 H 0.02 0.58 7.98 -2.39 -0.02 0.56 16 22 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 23 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.11 2.39 8.14 -2.38 -0.02 2.37 16 25 H 0.04 1.21 7.97 -2.39 -0.02 1.20 16 26 H 0.09 2.69 8.14 -2.38 -0.02 2.67 16 27 H 0.06 2.30 7.87 -2.39 -0.02 2.28 16 28 H 0.19 6.70 8.06 -2.91 -0.02 6.68 16 29 H 0.12 5.77 4.23 -2.91 -0.01 5.75 16 30 H 0.30 14.16 8.30 -92.70 -0.77 13.39 16 31 H 0.04 1.66 7.49 -2.39 -0.02 1.65 16 32 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 Total: -1.00 -60.56 260.75 0.97 -59.60 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: 1.01 Total: 17.80 kcal Atomic # 6 Polarization: -23.78 SS G_CDS: 4.84 Total: -18.94 kcal Atomic # 7 Polarization: -96.92 SS G_CDS: -6.57 Total: -103.48 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 1.68 Total: 45.03 kcal Total: -60.56 0.97 -59.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257856819.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.819 kcal (2) G-P(sol) polarization free energy of solvation -60.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds