Wall clock time and date at job start Mon Mar 30 2020 02:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.48531 * 110.99804 * 2 1 4 4 C 1.54941 * 103.22497 * 200.27719 * 3 2 1 5 5 C 1.54597 * 102.92159 * 37.41370 * 4 3 2 6 6 H 1.08994 * 110.39151 * 96.99922 * 5 4 3 7 7 N 1.46495 * 110.30947 * 219.12736 * 5 4 3 8 8 N 1.40030 * 126.20696 * 57.34350 * 7 5 4 9 9 C 1.31227 * 109.11447 * 180.28011 * 8 7 5 10 10 C 1.38700 * 109.07876 * 359.73831 * 9 8 7 11 11 C 1.37465 * 126.20323 * 237.16979 * 7 5 4 12 12 C 1.40235 * 126.65695 * 359.97438 * 11 7 5 13 13 H 1.07997 * 120.00068 * 19.18155 * 12 11 7 14 14 C 1.40172 * 119.99346 * 199.18158 * 12 11 7 15 15 N 1.30760 * 120.00431 * 23.41110 * 14 12 11 16 16 Si 1.86800 * 119.99615 * 203.40647 * 14 12 11 17 17 H 1.48502 * 109.47021 * 60.00243 * 16 14 12 18 18 H 1.48495 * 109.47052 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47303 * 300.00411 * 16 14 12 20 20 C 1.47903 * 111.00014 * 242.59934 * 2 1 3 21 21 H 1.09006 * 109.47057 * 177.39776 * 1 2 3 22 22 H 1.08998 * 109.47140 * 297.39525 * 1 2 3 23 23 H 1.08996 * 109.46911 * 57.40074 * 1 2 3 24 24 H 1.08997 * 110.66418 * 318.71359 * 3 2 1 25 25 H 1.08997 * 110.66649 * 81.84337 * 3 2 1 26 26 H 1.08997 * 110.72546 * 279.05508 * 4 3 2 27 27 H 1.08998 * 110.72248 * 155.76778 * 4 3 2 28 28 H 1.08000 * 125.46208 * 179.70599 * 9 8 7 29 29 H 1.08006 * 126.23023 * 180.02562 * 10 9 8 30 30 H 0.97004 * 119.99666 * 5.68818 * 15 14 12 31 31 H 1.09000 * 109.91510 * 26.49003 * 20 2 1 32 32 H 1.09001 * 110.07920 * 265.28447 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3867 0.0000 4 6 3.4492 1.2106 -0.5227 5 6 3.2983 0.1053 -1.5930 6 1 3.2143 0.5470 -2.5859 7 7 4.4390 -0.8124 -1.5405 8 7 4.8563 -1.5504 -0.4259 9 6 5.9139 -2.2566 -0.7496 10 6 6.2285 -2.0184 -2.0793 11 6 5.2918 -1.1079 -2.5773 12 6 5.2363 -0.5918 -3.8801 13 1 4.6885 0.3178 -4.0777 14 6 5.8918 -1.2565 -4.9256 15 7 6.1541 -2.5336 -4.8259 16 14 6.3905 -0.3178 -6.4617 17 1 7.3233 0.7768 -6.0919 18 1 7.0623 -1.2420 -7.4103 19 1 5.1819 0.2578 -7.1044 20 6 1.9991 -0.6355 -1.2259 21 1 -0.3633 -1.0267 -0.0467 22 1 -0.3633 0.4728 0.9124 23 1 -0.3633 0.5536 -0.8657 24 1 1.4237 2.0204 -0.6729 25 1 2.0040 1.7977 1.0095 26 1 4.1115 0.8836 0.2788 27 1 3.8123 2.1351 -0.9716 28 1 6.4533 -2.9169 -0.0867 29 1 7.0477 -2.4569 -2.6299 30 1 5.8233 -3.0388 -4.0667 31 1 1.2758 -0.5404 -2.0358 32 1 2.2118 -1.6882 -1.0397 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000257856821.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:34 Heat of formation + Delta-G solvation = 47.856597 kcal Electronic energy + Delta-G solvation = -15165.906179 eV Core-core repulsion = 12740.639377 eV Total energy + Delta-G solvation = -2425.266802 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.27043 -39.52377 -35.82277 -34.18277 -31.50207 -30.37632 -28.95981 -27.02581 -26.30778 -22.97126 -22.23548 -21.74630 -20.57142 -19.39325 -17.33084 -16.84785 -16.18444 -15.67988 -15.34298 -15.20617 -14.96263 -14.56499 -14.31193 -14.00717 -13.28443 -13.12562 -12.83427 -12.64601 -12.61712 -12.48955 -12.21029 -11.97602 -11.90564 -11.63855 -11.22660 -10.69259 -9.86972 -9.44966 -9.27036 -8.99825 -6.59424 1.28520 1.54352 1.78445 1.83907 2.10736 2.35733 2.40794 2.98697 3.12023 3.57165 3.65684 3.84902 4.13488 4.20331 4.34524 4.45541 4.54619 4.59561 4.72610 4.77258 4.92462 4.94674 5.04010 5.15344 5.28367 5.41018 5.61176 5.78746 5.97341 6.03804 6.06662 6.45601 6.68589 7.11456 7.51043 8.08615 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.033274 B = 0.008608 C = 0.007595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.287723 B = 3252.095445 C = 3685.977999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.536 5.536 3 C 0.048 3.952 4 C -0.126 4.126 5 C 0.160 3.840 6 H 0.096 0.904 7 N -0.420 5.420 8 N -0.383 5.383 9 C 0.050 3.950 10 C -0.432 4.432 11 C 0.234 3.766 12 C -0.552 4.552 13 H 0.080 0.920 14 C 0.013 3.987 15 N -0.818 5.818 16 Si 1.125 2.875 17 H -0.264 1.264 18 H -0.273 1.273 19 H -0.254 1.254 20 C 0.046 3.954 21 H 0.065 0.935 22 H 0.087 0.913 23 H 0.039 0.961 24 H 0.068 0.932 25 H 0.099 0.901 26 H 0.060 0.940 27 H 0.087 0.913 28 H 0.179 0.821 29 H 0.105 0.895 30 H 0.287 0.713 31 H 0.061 0.939 32 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.094 7.871 2.184 11.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.260 5.260 3 C -0.080 4.080 4 C -0.165 4.165 5 C 0.056 3.944 6 H 0.114 0.886 7 N -0.208 5.208 8 N -0.204 5.204 9 C -0.133 4.133 10 C -0.463 4.463 11 C 0.114 3.886 12 C -0.588 4.588 13 H 0.098 0.902 14 C -0.205 4.205 15 N -0.442 5.442 16 Si 0.941 3.059 17 H -0.189 1.189 18 H -0.197 1.197 19 H -0.178 1.178 20 C -0.083 4.083 21 H 0.084 0.916 22 H 0.106 0.894 23 H 0.058 0.942 24 H 0.086 0.914 25 H 0.117 0.883 26 H 0.079 0.921 27 H 0.106 0.894 28 H 0.196 0.804 29 H 0.123 0.877 30 H 0.100 0.900 31 H 0.079 0.921 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.093 7.713 2.252 11.404 hybrid contribution -0.196 -0.272 0.266 0.428 sum -8.289 7.440 2.518 11.419 Atomic orbital electron populations 1.22587 0.86018 1.02381 1.02131 1.64669 1.09721 1.15702 1.35951 1.23227 0.92951 0.89446 1.02353 1.22828 0.98440 0.97497 0.97703 1.21880 0.83561 0.88731 1.00254 0.88607 1.48821 1.24882 1.38908 1.08232 1.76852 1.18149 1.14734 1.10618 1.23412 0.95361 0.98839 0.95680 1.21239 1.09011 1.19129 0.96896 1.19140 0.88131 0.92222 0.89136 1.19853 1.35373 1.11722 0.91861 0.90180 1.28472 0.91033 0.95465 1.05529 1.70465 1.33722 1.08418 1.31608 0.82920 0.78236 0.74575 0.70192 1.18875 1.19729 1.17766 1.22961 0.94684 0.98838 0.91833 0.91643 0.89411 0.94225 0.91361 0.88295 0.92145 0.89449 0.80444 0.87673 0.89982 0.92095 0.92938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.40 127.69 1.20 1.58 16 2 N -0.54 -16.53 5.55 -909.14 -5.05 -21.58 16 3 C 0.05 1.26 6.56 86.65 0.57 1.83 16 4 C -0.13 -4.27 6.76 31.80 0.21 -4.05 16 5 C 0.16 6.46 3.81 45.87 0.17 6.63 16 6 H 0.10 3.81 6.92 -2.39 -0.02 3.79 16 7 N -0.42 -21.19 3.31 -314.76 -1.04 -22.23 16 8 N -0.38 -19.75 12.04 -57.58 -0.69 -20.45 16 9 C 0.05 2.53 11.93 84.89 1.01 3.54 16 10 C -0.43 -24.03 8.84 22.76 0.20 -23.83 16 11 C 0.23 12.96 6.38 39.12 0.25 13.21 16 12 C -0.55 -29.49 8.84 23.23 0.21 -29.29 16 13 H 0.08 4.00 7.12 -2.91 -0.02 3.98 16 14 C 0.01 0.68 5.27 85.32 0.45 1.13 16 15 N -0.82 -45.05 12.65 21.87 0.28 -44.77 16 16 Si 1.12 42.30 30.00 68.60 2.06 44.36 16 17 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 18 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 19 H -0.25 -8.51 7.11 99.48 0.71 -7.81 16 20 C 0.05 1.67 6.44 86.45 0.56 2.23 16 21 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 22 H 0.09 1.63 8.14 -2.39 -0.02 1.62 16 23 H 0.04 0.79 8.00 -2.39 -0.02 0.77 16 24 H 0.07 1.48 7.96 -2.39 -0.02 1.46 16 25 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 26 H 0.06 2.40 7.75 -2.39 -0.02 2.38 16 27 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 28 H 0.18 7.53 8.06 -2.91 -0.02 7.51 16 29 H 0.11 6.04 6.93 -2.91 -0.02 6.02 16 30 H 0.29 16.73 6.28 -92.71 -0.58 16.15 16 31 H 0.06 1.97 7.73 -2.39 -0.02 1.95 16 32 H 0.05 2.29 7.86 -2.39 -0.02 2.27 16 Total: -1.00 -65.07 266.28 1.67 -63.40 By element: Atomic # 1 Polarization: 26.99 SS G_CDS: 1.29 Total: 28.27 kcal Atomic # 6 Polarization: -31.84 SS G_CDS: 4.83 Total: -27.01 kcal Atomic # 7 Polarization: -102.52 SS G_CDS: -6.51 Total: -109.02 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.06 Total: 44.36 kcal Total: -65.07 1.67 -63.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257856821.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.258 kcal (2) G-P(sol) polarization free energy of solvation -65.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds