Wall clock time and date at job start Mon Mar 30 2020 02:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46898 * 109.47152 * 2 1 4 4 C 1.47962 * 110.99770 * 190.00018 * 3 2 1 5 5 C 1.53934 * 86.18028 * 222.41359 * 4 3 2 6 6 N 1.46499 * 113.73736 * 138.07694 * 5 4 3 7 7 C 1.34505 * 125.67390 * 276.90320 * 6 5 4 8 8 C 1.39288 * 107.18648 * 180.02562 * 7 6 5 9 9 C 1.41589 * 126.55781 * 180.02562 * 8 7 6 10 10 H 1.08003 * 120.00109 * 0.02562 * 9 8 7 11 11 C 1.39697 * 120.00062 * 180.02562 * 9 8 7 12 12 N 1.31030 * 119.99844 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 119.99967 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47464 * 89.99937 * 13 11 9 15 15 H 1.48497 * 109.47154 * 209.99609 * 13 11 9 16 16 H 1.48499 * 109.47286 * 329.99714 * 13 11 9 17 17 C 1.41881 * 106.88323 * 0.02562 * 8 7 6 18 18 N 1.30319 * 108.04850 * 359.97438 * 17 8 7 19 19 C 1.48186 * 111.07519 * 90.56481 * 3 2 1 20 20 H 1.08995 * 109.46958 * 300.00788 * 1 2 3 21 21 H 1.09005 * 109.46510 * 60.00639 * 1 2 3 22 22 H 1.09002 * 109.47068 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47476 * 239.99308 * 2 1 3 24 24 H 1.09005 * 109.46713 * 119.99875 * 2 1 3 25 25 H 1.08998 * 113.76241 * 108.10056 * 4 3 2 26 26 H 1.09001 * 113.85576 * 336.73990 * 4 3 2 27 27 H 1.09004 * 113.73608 * 269.25747 * 5 4 3 28 28 H 1.07998 * 126.40900 * 359.75690 * 7 6 5 29 29 H 0.97001 * 119.99976 * 180.02562 * 12 11 9 30 30 H 1.07996 * 125.97706 * 179.97438 * 17 8 7 31 31 H 1.09003 * 113.75678 * 23.23665 * 19 3 2 32 32 H 1.08996 * 113.82314 * 251.81246 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4790 1.4314 -0.2399 5 6 3.5231 2.4997 0.8675 6 7 4.6495 2.3453 1.7914 7 6 4.6844 1.5229 2.8552 8 6 5.9295 1.6830 3.4586 9 6 6.4000 1.0113 4.6128 10 1 5.7692 0.2919 5.1137 11 6 7.6802 1.2791 5.1036 12 7 8.4457 2.1516 4.4956 13 14 8.3012 0.3924 6.6260 14 1 8.9880 -0.8611 6.2231 15 1 9.2550 1.2673 7.3539 16 1 7.1544 0.0660 7.5111 17 6 6.6362 2.6480 2.6954 18 7 5.8672 3.0291 1.7147 19 6 2.2102 1.8828 1.3827 20 1 -0.3633 0.5139 0.8899 21 1 -0.3632 0.5138 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8934 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 3.7503 1.8093 -1.2256 26 1 3.9980 0.5085 0.0194 27 1 3.4134 3.5193 0.4981 28 1 3.8932 0.8649 3.1830 29 1 9.3348 2.3373 4.8362 30 1 7.6363 3.0045 2.8927 31 1 2.3556 1.0916 2.1182 32 1 1.4695 2.6206 1.6909 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000257892767.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:07 Heat of formation + Delta-G solvation = 88.343626 kcal Electronic energy + Delta-G solvation = -14719.527400 eV Core-core repulsion = 12296.016247 eV Total energy + Delta-G solvation = -2423.511153 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.75402 -40.16017 -35.45913 -34.02468 -31.53383 -30.99659 -27.74573 -27.37137 -26.24897 -23.20737 -21.96484 -21.39913 -20.01371 -19.18488 -17.37677 -17.03977 -16.66000 -16.02062 -15.40285 -15.24728 -14.62879 -14.24285 -14.16042 -13.82781 -13.27512 -13.21965 -12.89848 -12.77957 -12.59378 -12.42989 -12.20561 -11.83606 -11.79172 -11.65368 -11.11770 -10.81812 -10.03936 -9.72565 -9.13470 -8.35534 -6.02545 1.26722 1.45582 1.55934 1.58838 2.05265 2.34492 2.40775 2.83860 3.37685 3.56559 3.75173 3.92176 3.95984 4.20716 4.36614 4.48908 4.54283 4.61143 4.65746 4.74923 4.84769 4.97877 5.06083 5.23484 5.31933 5.38241 5.53198 5.71189 5.88876 6.10776 6.57689 6.73009 7.08471 7.16471 7.52348 8.65285 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.046868 B = 0.006366 C = 0.005800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.274397 B = 4397.434300 C = 4826.535747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.012 3.988 3 N -0.471 5.471 4 C -0.001 4.001 5 C 0.130 3.870 6 N -0.373 5.373 7 C -0.107 4.107 8 C -0.062 4.062 9 C -0.473 4.473 10 H 0.069 0.931 11 C 0.021 3.979 12 N -0.870 5.870 13 Si 0.988 3.012 14 H -0.269 1.269 15 H -0.274 1.274 16 H -0.262 1.262 17 C 0.002 3.998 18 N -0.352 5.352 19 C 0.009 3.991 20 H 0.052 0.948 21 H 0.062 0.938 22 H 0.072 0.928 23 H 0.079 0.921 24 H 0.041 0.959 25 H 0.105 0.895 26 H 0.063 0.937 27 H 0.119 0.881 28 H 0.164 0.836 29 H 0.279 0.721 30 H 0.188 0.812 31 H 0.079 0.921 32 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.142 -3.903 -5.191 12.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.116 4.116 3 N -0.194 5.194 4 C -0.131 4.131 5 C 0.027 3.973 6 N -0.161 5.161 7 C -0.249 4.249 8 C -0.072 4.072 9 C -0.507 4.507 10 H 0.087 0.913 11 C -0.187 4.187 12 N -0.502 5.502 13 Si 0.811 3.189 14 H -0.194 1.194 15 H -0.199 1.199 16 H -0.186 1.186 17 C -0.183 4.183 18 N -0.175 5.175 19 C -0.121 4.121 20 H 0.071 0.929 21 H 0.081 0.919 22 H 0.091 0.909 23 H 0.098 0.902 24 H 0.059 0.941 25 H 0.123 0.877 26 H 0.082 0.918 27 H 0.137 0.863 28 H 0.181 0.819 29 H 0.089 0.911 30 H 0.204 0.796 31 H 0.097 0.903 32 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -11.596 -2.751 -6.688 13.666 hybrid contribution 1.173 -1.279 1.856 2.541 sum -10.423 -4.030 -4.832 12.175 Atomic orbital electron populations 1.21631 0.92978 1.02347 1.02396 1.22724 0.98185 0.89147 1.01573 1.68539 1.13003 1.20702 1.17171 1.24394 0.89983 0.98245 1.00467 1.23218 0.83172 1.01167 0.89778 1.47811 1.11738 1.33400 1.23157 1.22395 1.00760 1.05892 0.95840 1.18628 0.92310 0.98585 0.97648 1.19003 1.00062 1.22119 1.09557 0.91261 1.26525 0.96213 0.95084 1.00848 1.69560 1.09637 1.31062 1.39944 0.85097 0.78272 0.78196 0.77348 1.19387 1.19856 1.18610 1.24920 1.00716 0.99322 0.93362 1.76476 0.93950 1.21753 1.25340 1.24486 0.94977 1.00396 0.92206 0.92869 0.91895 0.90898 0.90240 0.94060 0.87682 0.91845 0.86291 0.81928 0.91076 0.79556 0.90283 0.86850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 10.22 71.98 0.74 -1.61 16 2 C 0.01 0.26 5.52 86.31 0.48 0.74 16 3 N -0.47 -11.81 6.16 -907.63 -5.59 -17.40 16 4 C 0.00 -0.03 7.75 86.41 0.67 0.64 16 5 C 0.13 4.36 5.19 46.56 0.24 4.60 16 6 N -0.37 -16.73 3.78 -328.07 -1.24 -17.97 16 7 C -0.11 -5.11 10.75 84.54 0.91 -4.20 16 8 C -0.06 -3.46 5.93 -21.30 -0.13 -3.58 16 9 C -0.47 -26.38 9.40 23.45 0.22 -26.16 16 10 H 0.07 3.67 7.84 -2.91 -0.02 3.65 16 11 C 0.02 1.09 5.49 85.16 0.47 1.56 16 12 N -0.87 -47.51 10.33 21.79 0.22 -47.29 16 13 Si 0.99 40.45 29.56 68.60 2.03 42.48 16 14 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 15 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 16 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 17 C 0.00 0.12 10.91 85.82 0.94 1.05 16 18 N -0.35 -18.34 12.47 -55.94 -0.70 -19.04 16 19 C 0.01 0.24 7.34 86.37 0.63 0.87 16 20 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 21 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 22 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 23 H 0.08 1.60 8.08 -2.39 -0.02 1.58 16 24 H 0.04 0.94 7.39 -2.38 -0.02 0.92 16 25 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 26 H 0.06 2.02 7.93 -2.39 -0.02 2.00 16 27 H 0.12 3.83 8.14 -2.38 -0.02 3.81 16 28 H 0.16 6.78 6.66 -2.91 -0.02 6.76 16 29 H 0.28 13.94 8.30 -92.71 -0.77 13.18 16 30 H 0.19 10.94 5.77 -2.91 -0.02 10.92 16 31 H 0.08 2.23 5.61 -2.39 -0.01 2.21 16 32 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 Total: -1.00 -62.57 268.56 1.00 -61.57 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: 1.11 Total: 23.74 kcal Atomic # 6 Polarization: -31.26 SS G_CDS: 5.17 Total: -26.09 kcal Atomic # 7 Polarization: -94.39 SS G_CDS: -7.30 Total: -101.70 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 2.03 Total: 42.48 kcal Total: -62.57 1.00 -61.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257892767.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.917 kcal (2) G-P(sol) polarization free energy of solvation -62.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds