Wall clock time and date at job start Mon Mar 30 2020 02:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.48532 * 110.99969 * 2 1 4 4 C 1.54936 * 103.22610 * 200.27915 * 3 2 1 5 5 C 1.54598 * 102.92351 * 37.41208 * 4 3 2 6 6 H 1.08997 * 110.39169 * 96.99977 * 5 4 3 7 7 C 1.50697 * 110.30913 * 219.13012 * 5 4 3 8 8 C 1.36223 * 126.40496 * 32.16700 * 7 5 4 9 9 N 1.32756 * 108.61646 * 179.76003 * 8 7 5 10 10 C 1.32980 * 109.22757 * 0.39898 * 9 8 7 11 11 C 1.39997 * 125.95838 * 179.86369 * 10 9 8 12 12 H 1.08009 * 119.99403 * 179.97438 * 11 10 9 13 13 C 1.40235 * 120.00479 * 359.69454 * 11 10 9 14 14 N 1.30685 * 119.99680 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99930 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46986 * 90.00117 * 15 13 11 17 17 H 1.48496 * 109.47029 * 210.00134 * 15 13 11 18 18 H 1.48499 * 109.47352 * 329.99964 * 15 13 11 19 19 N 1.36422 * 126.40451 * 212.16733 * 7 5 4 20 20 H 0.97000 * 126.55084 * 0.02562 * 19 7 5 21 21 C 1.47900 * 111.00045 * 242.60122 * 2 1 3 22 22 H 1.09000 * 109.47244 * 177.39878 * 1 2 3 23 23 H 1.09002 * 109.47464 * 297.40115 * 1 2 3 24 24 H 1.09004 * 109.47081 * 57.40240 * 1 2 3 25 25 H 1.09001 * 110.66760 * 318.71039 * 3 2 1 26 26 H 1.08991 * 110.66809 * 81.67545 * 3 2 1 27 27 H 1.09001 * 110.72223 * 279.05308 * 4 3 2 28 28 H 1.08999 * 110.72572 * 155.77220 * 4 3 2 29 29 H 1.08002 * 125.68766 * 0.03516 * 8 7 5 30 30 H 0.97000 * 119.99429 * 179.97438 * 14 13 11 31 31 H 1.09000 * 109.91805 * 26.49191 * 21 2 1 32 32 H 1.09004 * 110.08241 * 265.29176 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3867 0.0000 4 6 3.4491 1.2106 -0.5228 5 6 3.2983 0.1053 -1.5930 6 1 3.2142 0.5470 -2.5859 7 6 4.4716 -0.8388 -1.5390 8 6 5.1792 -1.1862 -0.4280 9 7 6.1313 -2.0410 -0.7820 10 6 6.0660 -2.2507 -2.0935 11 6 6.9074 -3.0887 -2.8350 12 1 6.7670 -3.1883 -3.9012 13 6 7.9361 -3.7942 -2.1942 14 7 8.1097 -3.6690 -0.9050 15 14 9.0583 -4.9129 -3.1836 16 1 10.2288 -4.1374 -3.6673 17 1 9.5256 -6.0304 -2.3246 18 1 8.3126 -5.4601 -4.3454 19 7 5.0238 -1.5053 -2.5934 20 1 4.7366 -1.4614 -3.5189 21 6 1.9990 -0.6354 -1.2259 22 1 -0.3634 -1.0266 -0.0466 23 1 -0.3634 0.4729 0.9124 24 1 -0.3633 0.5537 -0.8658 25 1 1.4237 2.0204 -0.6730 26 1 2.0013 1.7987 1.0090 27 1 4.1115 0.8836 0.2788 28 1 3.8123 2.1351 -0.9716 29 1 4.9935 -0.8295 0.5744 30 1 8.8210 -4.1573 -0.4618 31 1 1.2758 -0.5403 -2.0358 32 1 2.2116 -1.6882 -1.0398 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259131724.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:55 Heat of formation + Delta-G solvation = 32.307917 kcal Electronic energy + Delta-G solvation = -14814.029236 eV Core-core repulsion = 12388.088192 eV Total energy + Delta-G solvation = -2425.941044 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.87898 -39.57108 -35.33093 -33.64182 -32.56103 -30.60960 -29.42450 -27.14087 -25.56048 -22.67493 -22.21735 -21.68262 -20.71622 -18.71725 -17.78168 -16.86058 -16.53875 -15.97689 -15.16817 -14.99447 -14.80285 -14.29724 -14.13136 -13.78922 -13.29969 -13.10099 -12.86466 -12.52696 -12.42236 -12.35946 -12.25911 -12.03037 -11.81806 -11.58851 -11.06606 -10.17716 -9.74221 -9.32618 -8.87776 -8.30821 -6.25596 1.38143 1.44833 1.59790 1.82516 2.28981 2.76297 2.98617 3.14169 3.66168 3.80938 3.88722 4.06053 4.36521 4.45379 4.53620 4.60617 4.64096 4.70984 4.72220 4.95885 4.99962 5.05517 5.16079 5.24146 5.34790 5.45522 5.78830 5.95821 6.16032 6.16936 6.33393 6.71433 7.03576 7.54408 8.31931 8.65582 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.068594 B = 0.006026 C = 0.005944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.098558 B = 4645.124324 C = 4709.649626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.543 5.543 3 C 0.042 3.958 4 C -0.112 4.112 5 C 0.000 4.000 6 H 0.080 0.920 7 C -0.102 4.102 8 C -0.041 4.041 9 N -0.562 5.562 10 C 0.339 3.661 11 C -0.498 4.498 12 H 0.089 0.911 13 C 0.031 3.969 14 N -0.795 5.795 15 Si 0.996 3.004 16 H -0.264 1.264 17 H -0.273 1.273 18 H -0.254 1.254 19 N -0.612 5.612 20 H 0.407 0.593 21 C 0.053 3.947 22 H 0.064 0.936 23 H 0.081 0.919 24 H 0.037 0.963 25 H 0.061 0.939 26 H 0.092 0.908 27 H 0.063 0.937 28 H 0.085 0.915 29 H 0.138 0.862 30 H 0.275 0.725 31 H 0.056 0.944 32 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.868 7.441 -2.628 13.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.268 5.268 3 C -0.085 4.085 4 C -0.150 4.150 5 C -0.021 4.021 6 H 0.098 0.902 7 C -0.216 4.216 8 C -0.192 4.192 9 N -0.285 5.285 10 C 0.093 3.907 11 C -0.537 4.537 12 H 0.107 0.893 13 C -0.188 4.188 14 N -0.421 5.421 15 Si 0.816 3.184 16 H -0.189 1.189 17 H -0.198 1.198 18 H -0.178 1.178 19 N -0.220 5.220 20 H 0.244 0.756 21 C -0.075 4.075 22 H 0.083 0.917 23 H 0.099 0.901 24 H 0.056 0.944 25 H 0.079 0.921 26 H 0.110 0.890 27 H 0.082 0.918 28 H 0.104 0.896 29 H 0.156 0.844 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -10.091 6.785 -1.338 12.233 hybrid contribution -0.382 0.143 -1.735 1.783 sum -10.473 6.928 -3.073 12.928 Atomic orbital electron populations 1.22550 0.86627 1.02172 1.01752 1.64658 1.09304 1.15900 1.36900 1.23256 0.94115 0.89257 1.01902 1.22551 0.97191 0.97584 0.97705 1.20129 0.89384 0.92806 0.99738 0.90152 1.20840 1.04044 1.08214 0.88460 1.22142 0.97525 1.02016 0.97534 1.71152 1.25036 1.21498 1.10808 1.20470 0.88090 0.93142 0.89011 1.18562 1.14042 1.25789 0.95357 0.89282 1.26762 0.98497 0.97670 0.95856 1.70169 1.26850 1.33944 1.11109 0.85028 0.77780 0.77219 0.78382 1.18893 1.19834 1.17765 1.43237 1.29105 1.40350 1.09294 0.75621 1.22835 0.94938 0.98516 0.91199 0.91727 0.90056 0.94436 0.92084 0.89003 0.91844 0.89606 0.84415 0.91482 0.92618 0.93231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.40 127.69 1.20 1.56 16 2 N -0.54 -14.94 5.55 -909.17 -5.05 -19.99 16 3 C 0.04 0.98 6.56 86.65 0.57 1.54 16 4 C -0.11 -3.18 6.55 31.80 0.21 -2.97 16 5 C 0.00 0.00 3.51 -10.66 -0.04 -0.04 16 6 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 7 C -0.10 -4.53 6.02 41.37 0.25 -4.28 16 8 C -0.04 -2.15 10.86 84.08 0.91 -1.23 16 9 N -0.56 -34.35 9.40 -194.17 -1.83 -36.17 16 10 C 0.34 19.53 7.61 133.59 1.02 20.54 16 11 C -0.50 -27.92 9.45 23.18 0.22 -27.70 16 12 H 0.09 4.53 7.85 -2.91 -0.02 4.50 16 13 C 0.03 1.67 5.50 85.35 0.47 2.14 16 14 N -0.79 -46.83 11.90 21.88 0.26 -46.57 16 15 Si 1.00 40.22 29.56 68.60 2.03 42.24 16 16 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 17 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 18 H -0.25 -9.66 7.11 99.48 0.71 -8.95 16 19 N -0.61 -28.91 6.25 -179.88 -1.13 -30.04 16 20 H 0.41 16.18 8.96 -92.71 -0.83 15.35 16 21 C 0.05 1.64 6.35 86.45 0.55 2.19 16 22 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.04 0.67 8.00 -2.39 -0.02 0.65 16 25 H 0.06 1.17 7.96 -2.39 -0.02 1.15 16 26 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.06 2.11 6.13 -2.39 -0.01 2.09 16 28 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.14 6.76 7.02 -2.91 -0.02 6.74 16 30 H 0.28 14.76 8.29 -92.71 -0.77 13.99 16 31 H 0.06 1.45 7.73 -2.39 -0.02 1.44 16 32 H 0.05 1.85 7.68 -2.39 -0.02 1.83 16 Total: -1.00 -70.42 266.14 -0.06 -70.48 By element: Atomic # 1 Polarization: 28.00 SS G_CDS: 0.29 Total: 28.29 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: 5.36 Total: -8.25 kcal Atomic # 7 Polarization: -125.02 SS G_CDS: -7.74 Total: -132.76 kcal Atomic # 14 Polarization: 40.22 SS G_CDS: 2.03 Total: 42.24 kcal Total: -70.42 -0.06 -70.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259131724.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.792 kcal (2) G-P(sol) polarization free energy of solvation -70.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds