Wall clock time and date at job start Mon Mar 30 2020 03:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86808 * 120.00180 * 2 1 4 4 H 1.48494 * 109.47145 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46733 * 299.99495 * 3 2 1 6 6 H 1.48497 * 109.47174 * 59.99590 * 3 2 1 7 7 C 1.37881 * 120.00256 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00021 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99648 * 359.97438 * 7 2 1 10 10 H 1.08995 * 109.24695 * 299.46589 * 9 7 2 11 11 C 1.52822 * 109.24695 * 58.89012 * 9 7 2 12 12 C 1.53633 * 110.64939 * 174.16027 * 11 9 7 13 13 N 1.45543 * 107.87403 * 302.87355 * 12 11 9 14 14 C 1.46356 * 117.17207 * 185.45707 * 13 12 11 15 15 C 1.54540 * 106.08004 * 208.23290 * 14 13 12 16 16 H 1.09001 * 114.77621 * 132.21183 * 15 14 13 17 17 C 1.53391 * 113.71171 * 268.67674 * 15 14 13 18 18 C 1.53581 * 87.83049 * 81.37036 * 17 15 14 19 19 C 1.55820 * 104.94827 * 3.32865 * 15 14 13 20 20 H 1.09003 * 117.75623 * 151.05010 * 19 15 14 21 21 C 1.48662 * 109.70225 * 65.29240 * 13 12 11 22 22 H 1.08998 * 111.12656 * 52.59681 * 21 13 12 23 23 C 1.52361 * 107.35893 * 290.46735 * 21 13 12 24 24 H 0.96997 * 119.99944 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.24137 * 294.46197 * 11 9 7 26 26 H 1.09005 * 109.24555 * 53.89695 * 11 9 7 27 27 H 1.08991 * 109.78282 * 183.27517 * 12 11 9 28 28 H 1.09001 * 109.77721 * 62.46406 * 12 11 9 29 29 H 1.08995 * 110.12772 * 327.38869 * 14 13 12 30 30 H 1.09001 * 110.12814 * 89.01221 * 14 13 12 31 31 H 1.09002 * 113.49612 * 196.10900 * 17 15 14 32 32 H 1.09001 * 113.49343 * 326.56710 * 17 15 14 33 33 H 1.08997 * 113.48488 * 138.81779 * 18 17 15 34 34 H 1.09004 * 113.48247 * 269.24900 * 18 17 15 35 35 H 1.08997 * 109.83731 * 182.36771 * 23 21 13 36 36 H 1.08998 * 109.84017 * 303.33091 * 23 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 1 0.6333 -2.5566 0.8979 11 6 0.3530 -2.5635 -1.2332 12 6 -0.3209 -3.9399 -1.3419 13 7 0.7273 -4.9491 -1.3758 14 6 0.3138 -6.3348 -1.6014 15 6 1.3746 -7.2168 -0.9050 16 1 0.9685 -8.0070 -0.2735 17 6 2.5341 -7.6268 -1.8217 18 6 3.1589 -6.2504 -1.5499 19 6 2.3429 -6.2106 -0.2137 20 1 2.8550 -6.5388 0.6908 21 6 1.4560 -4.9585 -0.0800 22 1 0.7660 -5.0557 0.7581 23 6 2.2539 -3.6631 0.0021 24 1 -0.4850 0.8400 -0.0004 25 1 -0.4141 -1.7927 -1.1601 26 1 0.9550 -2.3876 -2.1247 27 1 -0.9112 -3.9903 -2.2567 28 1 -0.9641 -4.1049 -0.4775 29 1 -0.6676 -6.5099 -1.1608 30 1 0.2887 -6.5494 -2.6698 31 1 3.1240 -8.4564 -1.4318 32 1 2.2365 -7.7726 -2.8601 33 1 4.2379 -6.2851 -1.4000 34 1 2.8572 -5.4872 -2.2672 35 1 2.8390 -3.6467 0.9216 36 1 2.9159 -3.5811 -0.8599 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259528183.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:06 Heat of formation + Delta-G solvation = 21.220929 kcal Electronic energy + Delta-G solvation = -15866.388052 eV Core-core repulsion = 13543.506584 eV Total energy + Delta-G solvation = -2322.881468 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.43815 -36.30464 -33.37371 -31.36115 -29.91404 -27.73427 -25.32648 -24.65004 -23.00702 -21.53862 -20.24700 -18.68680 -18.22982 -16.31438 -15.82648 -14.63261 -14.54066 -14.04386 -13.93735 -13.24863 -12.82219 -12.59067 -12.18518 -12.12069 -11.43225 -11.32789 -11.27747 -10.90820 -10.74011 -10.41930 -10.28864 -10.20350 -10.01536 -9.84278 -9.65118 -9.29752 -8.82388 -8.65259 -8.25014 -7.64349 -5.92972 -3.98185 3.32864 3.40862 3.45237 4.47311 4.53863 4.67319 4.86050 4.94128 5.16570 5.36729 5.49960 5.68145 5.82717 5.92007 5.96177 5.99428 6.04627 6.08524 6.16191 6.27429 6.31312 6.39711 6.61199 6.62706 6.71287 6.83692 6.98861 7.13716 7.25094 7.52201 7.68847 7.77320 7.98241 8.12342 8.23001 8.53783 9.06063 9.66058 11.12777 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.052124 B = 0.007707 C = 0.007114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.054496 B = 3632.390718 C = 3934.980148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.286 1.286 7 C -0.507 4.507 8 H 0.055 0.945 9 C 0.047 3.953 10 H 0.017 0.983 11 C -0.100 4.100 12 C 0.060 3.940 13 N -0.530 5.530 14 C 0.064 3.936 15 C -0.127 4.127 16 H 0.077 0.923 17 C -0.129 4.129 18 C -0.117 4.117 19 C -0.113 4.113 20 H 0.097 0.903 21 C 0.078 3.922 22 H 0.045 0.955 23 C -0.090 4.090 24 H 0.258 0.742 25 H 0.092 0.908 26 H 0.043 0.957 27 H 0.054 0.946 28 H 0.020 0.980 29 H 0.030 0.970 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.100 0.900 35 H 0.046 0.954 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.925 -12.328 -2.245 12.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.141 4.141 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.546 4.546 8 H 0.073 0.927 9 C 0.029 3.971 10 H 0.035 0.965 11 C -0.138 4.138 12 C -0.068 4.068 13 N -0.255 5.255 14 C -0.064 4.064 15 C -0.145 4.145 16 H 0.095 0.905 17 C -0.167 4.167 18 C -0.154 4.154 19 C -0.132 4.132 20 H 0.115 0.885 21 C -0.029 4.029 22 H 0.063 0.937 23 C -0.128 4.128 24 H 0.068 0.932 25 H 0.110 0.890 26 H 0.061 0.939 27 H 0.072 0.928 28 H 0.038 0.962 29 H 0.049 0.951 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.118 0.882 35 H 0.065 0.935 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.035 -12.036 -2.677 12.496 hybrid contribution -0.317 0.641 0.664 0.976 sum 1.718 -11.394 -2.013 11.698 Atomic orbital electron populations 1.69877 1.05869 1.26097 1.51444 1.24976 0.94829 0.99004 0.95303 0.86586 0.80210 0.84040 0.77457 1.19828 1.21113 1.21185 1.21282 0.92945 0.90675 1.49679 0.92681 1.18718 0.92579 0.91887 0.93951 0.96465 1.21688 1.00494 0.92308 0.99355 1.22183 0.92226 0.94015 0.98380 1.62882 1.27303 1.03363 1.31970 1.22226 0.95395 0.89030 0.99778 1.23404 0.95044 0.97770 0.98312 0.90511 1.22656 0.97235 0.97641 0.99128 1.23186 0.97832 0.97064 0.97314 1.23967 0.96607 0.95370 0.97267 0.88486 1.22513 0.94828 0.95582 0.90022 0.93725 1.21527 0.98271 0.92883 1.00126 0.93215 0.88967 0.93860 0.92754 0.96200 0.95122 0.91110 0.90982 0.91853 0.92566 0.88183 0.93515 0.92124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.70 11.28 55.43 0.63 -25.08 16 2 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 3 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.51 -14.10 8.56 -34.44 -0.29 -14.39 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.05 1.19 2.17 -91.53 -0.20 0.99 16 10 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 11 C -0.10 -2.41 5.02 -26.49 -0.13 -2.54 16 12 C 0.06 1.20 5.84 -4.23 -0.02 1.18 16 13 N -0.53 -9.74 3.57 -225.15 -0.80 -10.54 16 14 C 0.06 0.98 6.24 -3.31 -0.02 0.96 16 15 C -0.13 -1.72 5.00 -88.10 -0.44 -2.17 16 16 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 17 C -0.13 -1.59 7.64 -26.23 -0.20 -1.79 16 18 C -0.12 -1.68 6.88 -24.48 -0.17 -1.85 16 19 C -0.11 -1.71 4.99 -86.63 -0.43 -2.15 16 20 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 21 C 0.08 1.45 2.43 -66.53 -0.16 1.28 16 22 H 0.04 0.87 8.06 -51.93 -0.42 0.45 16 23 C -0.09 -1.93 4.80 -26.72 -0.13 -2.05 16 24 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 25 H 0.09 2.46 6.12 -51.93 -0.32 2.14 16 26 H 0.04 1.08 8.13 -51.93 -0.42 0.65 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.02 0.41 8.05 -51.93 -0.42 -0.01 16 29 H 0.03 0.46 8.04 -51.93 -0.42 0.05 16 30 H 0.07 1.03 7.90 -51.93 -0.41 0.62 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.75 7.98 -51.93 -0.41 0.33 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.10 1.66 7.12 -51.93 -0.37 1.29 16 35 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.06 1.32 7.69 -51.93 -0.40 0.92 16 LS Contribution 272.70 15.07 4.11 4.11 Total: -1.00 -27.96 272.70 -9.48 -37.43 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -6.09 Total: -1.45 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: -2.30 Total: -20.96 kcal Atomic # 7 Polarization: -35.44 SS G_CDS: -0.18 Total: -35.62 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -27.96 -9.48 -37.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259528183.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.651 kcal (2) G-P(sol) polarization free energy of solvation -27.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds