Wall clock time and date at job start Mon Mar 30 2020 03:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46904 * 111.00177 * 2 1 4 4 C 1.46900 * 111.00316 * 123.95829 * 2 1 3 5 5 C 1.53000 * 109.47190 * 169.99697 * 4 2 1 6 6 C 1.50699 * 109.47076 * 179.97438 * 5 4 2 7 7 C 1.39094 * 120.37390 * 125.00309 * 6 5 4 8 8 C 1.39053 * 118.67725 * 179.72484 * 7 6 5 9 9 N 1.31910 * 119.25958 * 0.27168 * 8 7 6 10 10 C 1.33441 * 120.68729 * 0.02562 * 9 8 7 11 11 C 1.41594 * 119.28141 * 180.02562 * 10 9 8 12 12 H 1.07994 * 119.99782 * 173.65593 * 11 10 9 13 13 C 1.40067 * 120.00046 * 353.65511 * 11 10 9 14 14 N 1.30689 * 120.00262 * 6.31122 * 13 11 10 15 15 Si 1.86801 * 119.99790 * 186.31408 * 13 11 10 16 16 H 1.48502 * 109.46912 * 94.98732 * 15 13 11 17 17 H 1.48501 * 109.47128 * 214.98482 * 15 13 11 18 18 H 1.48496 * 109.47349 * 334.98597 * 15 13 11 19 19 N 1.31888 * 120.37083 * 305.26371 * 6 5 4 20 20 H 1.09004 * 109.46835 * 296.04048 * 1 2 3 21 21 H 1.08993 * 109.47353 * 56.04487 * 1 2 3 22 22 H 1.09005 * 109.47029 * 176.04595 * 1 2 3 23 23 H 1.08997 * 109.46682 * 183.95454 * 3 2 1 24 24 H 1.08993 * 109.46859 * 303.95853 * 3 2 1 25 25 H 1.08998 * 109.46727 * 63.96121 * 3 2 1 26 26 H 1.09006 * 109.47044 * 49.99869 * 4 2 1 27 27 H 1.09000 * 109.47287 * 289.99851 * 4 2 1 28 28 H 1.09006 * 109.46987 * 60.00137 * 5 4 2 29 29 H 1.09002 * 109.47402 * 299.99782 * 5 4 2 30 30 H 1.08009 * 120.66124 * 359.97438 * 7 6 5 31 31 H 1.08005 * 120.37150 * 180.25481 * 8 7 6 32 32 H 0.96991 * 120.00080 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7661 1.1375 5 6 3.5045 -0.9554 0.9702 6 6 4.0447 -1.7408 2.1374 7 6 4.7702 -2.9081 1.9242 8 6 5.2572 -3.6019 3.0266 9 7 5.0146 -3.1396 4.2379 10 6 4.3100 -2.0196 4.4110 11 6 4.0676 -1.5499 5.7246 12 1 3.5888 -0.5939 5.8764 13 6 4.4488 -2.3253 6.8271 14 7 5.1370 -3.4218 6.6482 15 14 3.9733 -1.7920 8.5531 16 1 2.7178 -2.4761 8.9543 17 1 5.0587 -2.1541 9.4997 18 1 3.7654 -0.3218 8.5773 19 7 3.8304 -1.3316 3.3728 20 1 -0.3633 0.4512 0.9234 21 1 -0.3634 0.5740 -0.8524 22 1 -0.3633 -1.0253 -0.0709 23 1 3.0828 1.3431 -0.0709 24 1 1.5898 1.9163 -0.8523 25 1 1.7045 1.8723 0.9234 26 1 1.5090 -1.7408 1.1755 27 1 1.7976 -0.2249 2.0628 28 1 3.9910 0.0193 0.9322 29 1 3.7024 -1.4966 0.0449 30 1 4.9552 -3.2665 0.9222 31 1 5.8275 -4.5092 2.8925 32 1 5.4012 -3.9584 7.4117 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259707462.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:12 Heat of formation + Delta-G solvation = 22.757155 kcal Electronic energy + Delta-G solvation = -14566.992291 eV Core-core repulsion = 12140.637096 eV Total energy + Delta-G solvation = -2426.355196 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.89469 -38.53441 -35.84043 -34.43544 -32.82929 -30.59210 -28.46435 -28.27162 -26.03123 -23.80756 -23.11515 -21.72347 -19.34652 -17.97092 -16.98511 -16.51434 -16.32838 -15.95327 -15.58753 -15.35751 -14.91991 -14.42166 -14.24599 -13.57605 -13.30432 -13.05444 -12.94244 -12.69096 -12.64351 -12.50526 -12.37660 -11.96095 -11.94010 -11.25046 -10.89977 -10.85863 -9.82603 -9.36785 -9.23839 -8.43795 -6.74017 0.74484 1.01475 1.38533 1.49877 1.54677 2.19496 2.74096 2.99284 3.81834 3.86529 4.05420 4.13438 4.19917 4.29103 4.49084 4.51649 4.64547 4.70211 4.76768 4.84667 4.97516 4.99062 5.00309 5.07879 5.14484 5.21619 5.47151 5.83189 6.00731 6.10470 6.16664 6.55751 6.65203 7.21796 8.23800 8.38379 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.033011 B = 0.006992 C = 0.006057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.010930 B = 4003.441817 C = 4621.468493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.553 5.553 3 C 0.020 3.980 4 C 0.078 3.922 5 C -0.045 4.045 6 C 0.172 3.828 7 C -0.362 4.362 8 C 0.136 3.864 9 N -0.547 5.547 10 C 0.363 3.637 11 C -0.443 4.443 12 H 0.086 0.914 13 C 0.025 3.975 14 N -0.750 5.750 15 Si 0.998 3.002 16 H -0.261 1.261 17 H -0.260 1.260 18 H -0.257 1.257 19 N -0.612 5.612 20 H 0.019 0.981 21 H 0.089 0.911 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.088 0.912 25 H 0.017 0.983 26 H 0.061 0.939 27 H 0.021 0.979 28 H 0.077 0.923 29 H 0.098 0.902 30 H 0.142 0.858 31 H 0.156 0.844 32 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.051 4.206 -7.723 10.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.277 5.277 3 C -0.128 4.128 4 C -0.051 4.051 5 C -0.083 4.083 6 C 0.019 3.981 7 C -0.388 4.388 8 C -0.036 4.036 9 N -0.265 5.265 10 C 0.124 3.876 11 C -0.479 4.479 12 H 0.104 0.896 13 C -0.198 4.198 14 N -0.372 5.372 15 Si 0.817 3.183 16 H -0.186 1.186 17 H -0.185 1.185 18 H -0.180 1.180 19 N -0.333 5.333 20 H 0.038 0.962 21 H 0.108 0.892 22 H 0.088 0.912 23 H 0.088 0.912 24 H 0.107 0.893 25 H 0.036 0.964 26 H 0.079 0.921 27 H 0.039 0.961 28 H 0.096 0.904 29 H 0.116 0.884 30 H 0.159 0.841 31 H 0.173 0.827 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.961 4.137 -7.066 9.574 hybrid contribution -0.064 -0.028 0.626 0.630 sum -5.025 4.109 -6.440 9.144 Atomic orbital electron populations 1.22442 0.86321 1.02737 1.00970 1.62064 1.08901 1.14535 1.42180 1.22493 1.01304 0.88193 1.00798 1.21778 0.94507 0.97668 0.91149 1.20370 0.94784 0.99380 0.93799 1.21777 0.91079 0.92173 0.93024 1.22262 1.13718 1.02261 1.00590 1.23470 0.93386 0.97711 0.89072 1.69325 1.18653 1.15286 1.23280 1.20383 0.87641 0.86303 0.93224 1.19635 1.34542 1.05149 0.88552 0.89634 1.27046 0.93033 0.94082 1.05661 1.70201 1.22406 1.10596 1.33996 0.84968 0.79031 0.79826 0.74458 1.18601 1.18455 1.18033 1.68511 1.28684 1.36519 0.99609 0.96228 0.89250 0.91247 0.91178 0.89300 0.96394 0.92072 0.96051 0.90422 0.88387 0.84056 0.82668 0.90532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.52 9.57 127.69 1.22 1.74 16 2 N -0.55 -15.03 5.02 -948.85 -4.76 -19.79 16 3 C 0.02 0.48 9.32 127.69 1.19 1.67 16 4 C 0.08 2.62 4.82 86.30 0.42 3.04 16 5 C -0.05 -1.58 5.57 29.85 0.17 -1.42 16 6 C 0.17 7.87 6.22 42.76 0.27 8.14 16 7 C -0.36 -15.88 9.83 22.67 0.22 -15.66 16 8 C 0.14 6.60 11.30 84.88 0.96 7.56 16 9 N -0.55 -31.56 7.91 -193.91 -1.53 -33.09 16 10 C 0.36 21.49 7.36 135.15 0.99 22.49 16 11 C -0.44 -25.53 9.37 23.54 0.22 -25.31 16 12 H 0.09 4.78 7.85 -2.91 -0.02 4.76 16 13 C 0.02 1.30 5.49 85.31 0.47 1.77 16 14 N -0.75 -40.79 11.46 21.84 0.25 -40.54 16 15 Si 1.00 38.74 29.56 68.60 2.03 40.77 16 16 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 17 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 18 H -0.26 -9.71 7.11 99.48 0.71 -9.01 16 19 N -0.61 -33.19 9.94 -182.00 -1.81 -35.00 16 20 H 0.02 0.45 8.14 -2.38 -0.02 0.44 16 21 H 0.09 1.57 8.12 -2.39 -0.02 1.55 16 22 H 0.07 1.51 8.12 -2.38 -0.02 1.49 16 23 H 0.07 1.67 6.47 -2.39 -0.02 1.66 16 24 H 0.09 1.64 8.12 -2.39 -0.02 1.62 16 25 H 0.02 0.45 8.14 -2.39 -0.02 0.43 16 26 H 0.06 2.14 8.06 -2.38 -0.02 2.12 16 27 H 0.02 0.83 7.95 -2.39 -0.02 0.82 16 28 H 0.08 2.63 6.55 -2.38 -0.02 2.61 16 29 H 0.10 2.98 7.94 -2.39 -0.02 2.96 16 30 H 0.14 5.04 8.01 -2.91 -0.02 5.01 16 31 H 0.16 6.41 8.06 -2.91 -0.02 6.38 16 32 H 0.28 13.73 8.29 -92.71 -0.77 12.96 16 Total: -1.00 -66.98 273.89 1.40 -65.58 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: 1.10 Total: 18.04 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: 6.13 Total: 4.03 kcal Atomic # 7 Polarization: -120.56 SS G_CDS: -7.85 Total: -128.42 kcal Atomic # 14 Polarization: 38.74 SS G_CDS: 2.03 Total: 40.77 kcal Total: -66.98 1.40 -65.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259707462.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.340 kcal (2) G-P(sol) polarization free energy of solvation -66.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds