Wall clock time and date at job start Mon Mar 30 2020 02:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.40069 * 126.04005 * 2 1 4 4 C 1.30836 * 108.38760 * 180.22747 * 3 2 1 5 5 C 1.39775 * 108.32484 * 359.78248 * 4 3 2 6 6 C 1.35249 * 126.04627 * 179.83948 * 2 1 3 7 7 N 1.39201 * 126.22050 * 0.04354 * 6 2 1 8 8 C 1.47841 * 111.00503 * 135.66805 * 7 6 2 9 9 C 1.54906 * 104.80315 * 146.36109 * 8 7 6 10 10 C 1.55141 * 101.64914 * 322.93445 * 9 8 7 11 11 C 1.47448 * 111.00271 * 256.51142 * 7 6 2 12 12 H 1.08993 * 109.89087 * 117.33001 * 11 7 6 13 13 C 1.50701 * 109.88388 * 356.30842 * 11 7 6 14 14 H 1.08004 * 120.00251 * 295.65288 * 13 11 7 15 15 C 1.37874 * 120.00123 * 115.64974 * 13 11 7 16 16 N 1.31516 * 120.00117 * 179.97438 * 15 13 11 17 17 Si 1.86802 * 120.00014 * 359.97438 * 15 13 11 18 18 H 1.48501 * 109.47018 * 89.99877 * 17 15 13 19 19 H 1.48499 * 109.47276 * 209.99723 * 17 15 13 20 20 H 1.48499 * 109.47023 * 330.00421 * 17 15 13 21 21 H 1.09000 * 109.47160 * 270.15651 * 1 2 3 22 22 H 1.08992 * 109.47947 * 30.15845 * 1 2 3 23 23 H 1.09006 * 109.46899 * 150.16384 * 1 2 3 24 24 H 1.08005 * 125.83557 * 179.75395 * 4 3 2 25 25 H 1.08003 * 126.09270 * 179.97438 * 5 4 3 26 26 H 1.09006 * 110.37672 * 265.19509 * 8 7 6 27 27 H 1.08998 * 110.37356 * 27.41731 * 8 7 6 28 28 H 1.09004 * 110.98651 * 81.01733 * 9 8 7 29 29 H 1.08993 * 110.99209 * 204.80290 * 9 8 7 30 30 H 1.09001 * 110.70353 * 277.26431 * 10 9 8 31 31 H 1.09007 * 110.70541 * 154.03726 * 10 9 8 32 32 H 0.97003 * 119.99920 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1326 0.0000 4 6 3.5358 0.7359 -0.0049 5 6 3.5522 -0.6618 -0.0032 6 6 2.2608 -1.0935 0.0031 7 7 1.8368 -2.4194 0.0059 8 6 2.6163 -3.2271 -0.9562 9 6 2.7176 -4.6291 -0.3052 10 6 2.8732 -4.2673 1.1953 11 6 1.9809 -3.0174 1.3460 12 1 1.0025 -3.3045 1.7311 13 6 2.6299 -2.0297 2.2810 14 1 3.6432 -1.7017 2.1016 15 6 1.9302 -1.5446 3.3654 16 7 2.4968 -0.6830 4.1817 17 14 0.1774 -2.1112 3.6754 18 1 0.1930 -3.3184 4.5400 19 1 -0.5808 -1.0280 4.3514 20 1 -0.4734 -2.4378 2.3812 21 1 -0.3633 0.0028 1.0277 22 1 -0.3635 0.8884 -0.5162 23 1 -0.3633 -0.8915 -0.5113 24 1 4.4039 1.3785 -0.0100 25 1 4.4324 -1.2877 -0.0066 26 1 2.0939 -3.2888 -1.9109 27 1 3.6089 -2.7987 -1.0948 28 1 1.8081 -5.2053 -0.4756 29 1 3.5924 -5.1670 -0.6706 30 1 3.9112 -4.0303 1.4290 31 1 2.5105 -5.0783 1.8270 32 1 2.0046 -0.3421 4.9449 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259712170.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:56 Heat of formation + Delta-G solvation = 96.098867 kcal Electronic energy + Delta-G solvation = -15916.337344 eV Core-core repulsion = 13493.162483 eV Total energy + Delta-G solvation = -2423.174860 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.44800 -37.77903 -32.60082 -32.35423 -31.23681 -29.05175 -27.14921 -25.89100 -24.28608 -21.23671 -20.40939 -19.84472 -18.52051 -17.41475 -16.06647 -15.10511 -14.53946 -14.32971 -13.94839 -13.42136 -12.91140 -12.76458 -12.37898 -12.18843 -11.96186 -11.69640 -11.58720 -11.54131 -10.96542 -10.58048 -10.52054 -9.83539 -9.66787 -9.64828 -9.45977 -8.67511 -8.22154 -7.81911 -7.12960 -6.15350 -4.16478 2.90926 3.19010 3.28993 3.29386 3.39691 3.86327 4.32314 4.70970 5.25233 5.40649 5.46919 5.55049 5.70754 5.84962 5.94392 6.07298 6.09114 6.22424 6.29009 6.41680 6.52221 6.63095 6.67814 6.73868 7.00607 7.09114 7.35604 7.64079 7.69994 7.84872 8.31804 8.50997 8.78409 8.94859 9.45304 10.95991 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.020307 B = 0.017916 C = 0.012774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.508684 B = 1562.442116 C = 2191.449588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.114 3.886 2 N -0.363 5.363 3 N -0.319 5.319 4 C 0.052 3.948 5 C -0.296 4.296 6 C 0.338 3.662 7 N -0.504 5.504 8 C 0.054 3.946 9 C -0.132 4.132 10 C -0.128 4.128 11 C 0.168 3.832 12 H 0.056 0.944 13 C -0.522 4.522 14 H 0.087 0.913 15 C 0.084 3.916 16 N -0.882 5.882 17 Si 0.864 3.136 18 H -0.275 1.275 19 H -0.288 1.288 20 H -0.258 1.258 21 H 0.061 0.939 22 H 0.074 0.926 23 H 0.083 0.917 24 H 0.167 0.833 25 H 0.130 0.870 26 H 0.064 0.936 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.755 -4.095 -8.504 9.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.146 5.146 3 N -0.142 5.142 4 C -0.132 4.132 5 C -0.327 4.327 6 C 0.117 3.883 7 N -0.229 5.229 8 C -0.074 4.074 9 C -0.170 4.170 10 C -0.167 4.167 11 C 0.065 3.935 12 H 0.074 0.926 13 C -0.560 4.560 14 H 0.105 0.895 15 C -0.121 4.121 16 N -0.518 5.518 17 Si 0.691 3.309 18 H -0.201 1.201 19 H -0.214 1.214 20 H -0.183 1.183 21 H 0.079 0.921 22 H 0.093 0.907 23 H 0.102 0.898 24 H 0.184 0.816 25 H 0.148 0.852 26 H 0.083 0.917 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.254 -2.966 -8.466 9.543 hybrid contribution 0.358 -0.893 0.811 1.258 sum -2.897 -3.859 -7.656 9.050 Atomic orbital electron populations 1.21554 0.76069 1.02838 1.02427 1.48161 1.05609 1.03280 1.57559 1.77156 1.01718 1.07236 1.28061 1.23272 0.94804 0.95005 1.00153 1.21039 0.96180 0.94770 1.20736 1.18555 0.88587 0.86141 0.95062 1.60901 1.54064 0.97851 1.10065 1.22924 0.96573 0.92819 0.95081 1.22707 1.00913 0.96121 0.97305 1.22889 1.01526 0.98452 0.93846 1.20551 0.95965 0.92018 0.85006 0.92628 1.21370 1.02335 1.24028 1.08304 0.89498 1.25061 0.97387 0.94030 0.95655 1.69897 1.37426 1.29706 1.14794 0.87048 0.86198 0.78761 0.78877 1.20089 1.21430 1.18270 0.92065 0.90730 0.89805 0.81586 0.85247 0.91725 0.92873 0.91654 0.91768 0.91340 0.92251 0.92616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.10 11.40 59.84 0.68 2.79 16 2 N -0.36 -8.12 4.02 -67.25 -0.27 -8.39 16 3 N -0.32 -7.28 12.56 30.61 0.38 -6.89 16 4 C 0.05 1.11 12.01 -17.40 -0.21 0.90 16 5 C -0.30 -6.51 7.53 -39.75 -0.30 -6.81 16 6 C 0.34 7.58 4.42 -153.41 -0.68 6.91 16 7 N -0.50 -10.61 5.12 -163.86 -0.84 -11.45 16 8 C 0.05 0.93 6.62 -2.30 -0.02 0.91 16 9 C -0.13 -2.08 7.08 -24.59 -0.17 -2.25 16 10 C -0.13 -2.45 6.46 -24.91 -0.16 -2.61 16 11 C 0.17 3.82 3.30 -67.88 -0.22 3.60 16 12 H 0.06 1.32 4.55 -51.93 -0.24 1.08 16 13 C -0.52 -13.96 6.49 -34.44 -0.22 -14.18 16 14 H 0.09 2.57 6.54 -52.48 -0.34 2.23 16 15 C 0.08 2.35 5.47 -17.82 -0.10 2.25 16 16 N -0.88 -26.60 13.96 55.43 0.77 -25.82 16 17 Si 0.86 21.03 27.26 -169.99 -4.63 16.40 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 20 H -0.26 -6.00 6.35 56.52 0.36 -5.64 16 21 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 22 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 23 H 0.08 1.41 8.10 -51.93 -0.42 0.99 16 24 H 0.17 2.93 8.06 -52.48 -0.42 2.51 16 25 H 0.13 2.71 7.39 -52.48 -0.39 2.32 16 26 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 27 H 0.05 0.93 6.30 -51.93 -0.33 0.60 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 1.36 7.85 -51.93 -0.41 0.96 16 31 H 0.06 1.06 8.14 -51.92 -0.42 0.64 16 32 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 260.22 15.07 3.92 3.92 Total: -1.00 -31.30 260.22 -6.32 -37.62 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -4.26 Total: 3.12 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -1.40 Total: -8.49 kcal Atomic # 7 Polarization: -52.61 SS G_CDS: 0.05 Total: -52.56 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.63 Total: 16.40 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -31.30 -6.32 -37.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259712170.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.720 kcal (2) G-P(sol) polarization free energy of solvation -31.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds