Wall clock time and date at job start Mon Mar 30 2020 02:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.40069 * 126.04005 * 2 1 4 4 C 1.30836 * 108.38760 * 180.22747 * 3 2 1 5 5 C 1.39775 * 108.32484 * 359.78248 * 4 3 2 6 6 C 1.35249 * 126.04627 * 179.83948 * 2 1 3 7 7 N 1.39201 * 126.22050 * 0.04354 * 6 2 1 8 8 C 1.47841 * 111.00503 * 135.66805 * 7 6 2 9 9 C 1.54906 * 104.80315 * 146.36109 * 8 7 6 10 10 C 1.55141 * 101.64914 * 322.93445 * 9 8 7 11 11 C 1.47448 * 111.00271 * 256.51142 * 7 6 2 12 12 H 1.08993 * 109.89087 * 117.33001 * 11 7 6 13 13 C 1.50701 * 109.88388 * 356.30842 * 11 7 6 14 14 H 1.08004 * 120.00251 * 295.65288 * 13 11 7 15 15 C 1.37874 * 120.00123 * 115.64974 * 13 11 7 16 16 N 1.31516 * 120.00117 * 179.97438 * 15 13 11 17 17 Si 1.86802 * 120.00014 * 359.97438 * 15 13 11 18 18 H 1.48501 * 109.47018 * 89.99877 * 17 15 13 19 19 H 1.48499 * 109.47276 * 209.99723 * 17 15 13 20 20 H 1.48499 * 109.47023 * 330.00421 * 17 15 13 21 21 H 1.09000 * 109.47160 * 270.15651 * 1 2 3 22 22 H 1.08992 * 109.47947 * 30.15845 * 1 2 3 23 23 H 1.09006 * 109.46899 * 150.16384 * 1 2 3 24 24 H 1.08005 * 125.83557 * 179.75395 * 4 3 2 25 25 H 1.08003 * 126.09270 * 179.97438 * 5 4 3 26 26 H 1.09006 * 110.37672 * 265.19509 * 8 7 6 27 27 H 1.08998 * 110.37356 * 27.41731 * 8 7 6 28 28 H 1.09004 * 110.98651 * 81.01733 * 9 8 7 29 29 H 1.08993 * 110.99209 * 204.80290 * 9 8 7 30 30 H 1.09001 * 110.70353 * 277.26431 * 10 9 8 31 31 H 1.09007 * 110.70541 * 154.03726 * 10 9 8 32 32 H 0.97003 * 119.99920 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1326 0.0000 4 6 3.5358 0.7359 -0.0049 5 6 3.5522 -0.6618 -0.0032 6 6 2.2608 -1.0935 0.0031 7 7 1.8368 -2.4194 0.0059 8 6 2.6163 -3.2271 -0.9562 9 6 2.7176 -4.6291 -0.3052 10 6 2.8732 -4.2673 1.1953 11 6 1.9809 -3.0174 1.3460 12 1 1.0025 -3.3045 1.7311 13 6 2.6299 -2.0297 2.2810 14 1 3.6432 -1.7017 2.1016 15 6 1.9302 -1.5446 3.3654 16 7 2.4968 -0.6830 4.1817 17 14 0.1774 -2.1112 3.6754 18 1 0.1930 -3.3184 4.5400 19 1 -0.5808 -1.0280 4.3514 20 1 -0.4734 -2.4378 2.3812 21 1 -0.3633 0.0028 1.0277 22 1 -0.3635 0.8884 -0.5162 23 1 -0.3633 -0.8915 -0.5113 24 1 4.4039 1.3785 -0.0100 25 1 4.4324 -1.2877 -0.0066 26 1 2.0939 -3.2888 -1.9109 27 1 3.6089 -2.7987 -1.0948 28 1 1.8081 -5.2053 -0.4756 29 1 3.5924 -5.1670 -0.6706 30 1 3.9112 -4.0303 1.4290 31 1 2.5105 -5.0783 1.8270 32 1 2.0046 -0.3421 4.9449 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259712170.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:56 Heat of formation + Delta-G solvation = 74.484445 kcal Electronic energy + Delta-G solvation = -15917.274616 eV Core-core repulsion = 13493.162483 eV Total energy + Delta-G solvation = -2424.112132 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.12433 -39.38647 -34.65856 -33.96655 -32.78346 -30.81904 -28.81146 -27.45766 -26.13723 -22.80392 -22.07088 -21.40744 -20.24762 -19.34525 -17.81840 -16.71528 -16.29097 -15.94512 -15.68830 -15.01426 -14.75845 -14.40943 -14.14584 -13.83364 -13.47158 -13.26565 -13.15226 -13.05991 -12.81683 -12.16421 -11.93123 -11.77802 -11.43797 -11.35619 -11.19940 -10.76302 -9.92356 -9.51211 -8.85743 -8.28386 -6.31641 1.19097 1.27055 1.29950 1.38658 1.80676 2.15388 2.30308 2.92758 3.49493 3.91114 3.99369 4.12513 4.32325 4.40782 4.44566 4.62068 4.63573 4.75748 4.81796 4.91254 5.04436 5.10160 5.15096 5.22108 5.32828 5.48342 5.58058 5.88516 6.01605 6.19490 6.30603 6.70290 6.81310 7.08896 7.32869 8.86062 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.020307 B = 0.017916 C = 0.012774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.508684 B = 1562.442116 C = 2191.449588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.374 5.374 3 N -0.341 5.341 4 C 0.045 3.955 5 C -0.310 4.310 6 C 0.326 3.674 7 N -0.503 5.503 8 C 0.048 3.952 9 C -0.115 4.115 10 C -0.128 4.128 11 C 0.164 3.836 12 H 0.052 0.948 13 C -0.507 4.507 14 H 0.047 0.953 15 C 0.025 3.975 16 N -0.937 5.937 17 Si 0.920 3.080 18 H -0.264 1.264 19 H -0.297 1.297 20 H -0.238 1.238 21 H 0.047 0.953 22 H 0.100 0.900 23 H 0.102 0.898 24 H 0.196 0.804 25 H 0.132 0.868 26 H 0.090 0.910 27 H 0.048 0.952 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.829 -5.889 -10.156 12.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.157 5.157 3 N -0.165 5.165 4 C -0.139 4.139 5 C -0.342 4.342 6 C 0.103 3.897 7 N -0.227 5.227 8 C -0.079 4.079 9 C -0.153 4.153 10 C -0.168 4.168 11 C 0.060 3.940 12 H 0.070 0.930 13 C -0.546 4.546 14 H 0.066 0.934 15 C -0.174 4.174 16 N -0.577 5.577 17 Si 0.745 3.255 18 H -0.189 1.189 19 H -0.224 1.224 20 H -0.161 1.161 21 H 0.066 0.934 22 H 0.119 0.881 23 H 0.121 0.879 24 H 0.213 0.787 25 H 0.150 0.850 26 H 0.108 0.892 27 H 0.067 0.933 28 H 0.104 0.896 29 H 0.112 0.888 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.335 -4.785 -10.151 12.031 hybrid contribution 0.787 -0.322 1.251 1.512 sum -3.549 -5.107 -8.900 10.858 Atomic orbital electron populations 1.21812 0.74297 1.05171 1.02212 1.48480 1.06864 1.03071 1.57324 1.77092 1.02386 1.08122 1.28874 1.23812 0.95432 0.95395 0.99265 1.21248 0.96552 0.95310 1.21049 1.18828 0.88864 0.86860 0.95110 1.60809 1.54823 0.97477 1.09638 1.23134 0.96288 0.93084 0.95357 1.22684 1.03306 0.95441 0.93872 1.22795 0.99720 0.97104 0.97134 1.20546 0.96003 0.92418 0.85039 0.93015 1.21480 1.00634 1.23909 1.08563 0.93434 1.25821 1.01432 0.94368 0.95770 1.70058 1.39235 1.32357 1.16005 0.86137 0.81480 0.78276 0.79593 1.18900 1.22357 1.16140 0.93422 0.88097 0.87931 0.78736 0.84987 0.89196 0.93325 0.89644 0.88801 0.92932 0.90796 0.93067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.77 11.40 127.77 1.46 5.22 16 2 N -0.37 -16.42 4.02 -366.67 -1.47 -17.89 16 3 N -0.34 -15.50 12.56 -57.08 -0.72 -16.22 16 4 C 0.04 1.91 12.01 85.21 1.02 2.93 16 5 C -0.31 -13.63 7.53 22.16 0.17 -13.46 16 6 C 0.33 14.31 4.42 131.43 0.58 14.89 16 7 N -0.50 -20.07 5.12 -672.33 -3.44 -23.52 16 8 C 0.05 1.51 6.62 86.77 0.57 2.08 16 9 C -0.12 -3.12 7.08 31.98 0.23 -2.89 16 10 C -0.13 -4.59 6.46 31.77 0.21 -4.38 16 11 C 0.16 7.19 3.30 44.51 0.15 7.34 16 12 H 0.05 2.32 4.55 -2.39 -0.01 2.31 16 13 C -0.51 -27.33 6.49 25.60 0.17 -27.16 16 14 H 0.05 2.90 6.54 -2.91 -0.02 2.88 16 15 C 0.03 1.44 5.47 84.65 0.46 1.90 16 16 N -0.94 -58.32 13.96 21.45 0.30 -58.03 16 17 Si 0.92 43.22 27.26 68.60 1.87 45.09 16 18 H -0.26 -11.82 7.11 99.48 0.71 -11.12 16 19 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 20 H -0.24 -10.27 6.35 99.48 0.63 -9.63 16 21 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 22 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16 23 H 0.10 3.19 8.10 -2.38 -0.02 3.17 16 24 H 0.20 6.77 8.06 -2.91 -0.02 6.74 16 25 H 0.13 5.57 7.39 -2.91 -0.02 5.55 16 26 H 0.09 2.41 8.14 -2.38 -0.02 2.40 16 27 H 0.05 1.58 6.30 -2.39 -0.02 1.56 16 28 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 29 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.05 2.03 7.85 -2.39 -0.02 2.01 16 31 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 32 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -68.46 260.22 2.58 -65.88 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: 1.03 Total: 18.20 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: 5.01 Total: -13.53 kcal Atomic # 7 Polarization: -110.32 SS G_CDS: -5.33 Total: -115.65 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 1.87 Total: 45.09 kcal Total: -68.46 2.58 -65.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259712170.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.368 kcal (2) G-P(sol) polarization free energy of solvation -68.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds