Wall clock time and date at job start Mon Mar 30 2020 03:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36930 * 120.00095 * 2 1 4 4 H 1.08006 * 120.00180 * 159.83958 * 3 2 1 5 5 C 1.38820 * 120.00087 * 339.56299 * 3 2 1 6 6 N 1.31616 * 119.99435 * 347.87317 * 5 3 2 7 7 Si 1.86800 * 119.99837 * 167.86739 * 5 3 2 8 8 H 1.48500 * 109.47532 * 0.02562 * 7 5 3 9 9 H 1.48500 * 109.46722 * 120.00404 * 7 5 3 10 10 H 1.48500 * 109.46989 * 240.00029 * 7 5 3 11 11 C 1.46499 * 119.99989 * 180.02562 * 2 1 3 12 12 H 1.09002 * 109.71294 * 179.39595 * 11 2 1 13 13 C 1.53375 * 109.71782 * 299.99883 * 11 2 1 14 14 C 1.53016 * 109.75391 * 170.35290 * 13 11 2 15 15 C 1.53389 * 109.72861 * 288.29389 * 14 13 11 16 16 C 1.50886 * 108.19126 * 50.54823 * 15 14 13 17 17 C 1.34575 * 128.32617 * 163.36439 * 16 15 14 18 18 N 1.35201 * 107.61573 * 180.13846 * 17 16 15 19 19 H 0.96991 * 125.99987 * 179.97438 * 18 17 16 20 20 N 1.40309 * 107.99350 * 359.93300 * 18 17 16 21 21 C 1.30130 * 108.12455 * 359.97438 * 20 18 17 22 22 H 1.09000 * 109.47152 * 84.85613 * 1 2 3 23 23 H 1.09002 * 109.47460 * 204.85752 * 1 2 3 24 24 H 1.09001 * 109.47039 * 324.85946 * 1 2 3 25 25 H 0.97009 * 119.99559 * 180.02562 * 6 5 3 26 26 H 1.09004 * 109.42318 * 290.44334 * 13 11 2 27 27 H 1.09000 * 109.42505 * 50.32162 * 13 11 2 28 28 H 1.09002 * 109.43160 * 48.37515 * 14 13 11 29 29 H 1.09004 * 109.42889 * 168.21497 * 14 13 11 30 30 H 1.09000 * 109.71893 * 170.21656 * 15 14 13 31 31 H 1.08999 * 109.71925 * 290.87263 * 15 14 13 32 32 H 1.08001 * 126.18907 * 0.07430 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1858 0.0000 4 1 3.1800 1.2145 0.3224 5 6 1.5211 2.3502 -0.4198 6 7 0.3608 2.2856 -1.0377 7 14 2.3221 4.0087 -0.1075 8 1 3.6131 3.8098 0.5988 9 1 2.5671 4.6917 -1.4030 10 1 1.4228 4.8428 0.7296 11 6 2.1974 -1.2687 -0.0006 12 1 3.2699 -1.0741 -0.0113 13 6 1.8310 -2.0784 1.2495 14 6 2.4021 -3.4933 1.1350 15 6 1.6158 -4.2855 0.0828 16 6 1.5462 -3.4565 -1.1760 17 6 1.2342 -3.8564 -2.4225 18 7 1.3027 -2.7734 -3.2289 19 1 1.1284 -2.7611 -4.1830 20 7 1.6692 -1.6704 -2.4430 21 6 1.8135 -2.0778 -1.2156 22 1 -0.3633 0.0921 -1.0235 23 1 -0.3634 -0.9325 0.4320 24 1 -0.3633 0.8404 0.5915 25 1 -0.0783 3.0993 -1.3314 26 1 2.2454 -1.5904 2.1317 27 1 0.7462 -2.1325 1.3412 28 1 3.4499 -3.4387 0.8394 29 1 2.3240 -3.9950 2.0995 30 1 2.1244 -5.2269 -0.1247 31 1 0.6084 -4.4838 0.4487 32 1 0.9768 -4.8610 -2.7242 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259744593.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:30 Heat of formation + Delta-G solvation = 71.202768 kcal Electronic energy + Delta-G solvation = -15459.058289 eV Core-core repulsion = 13034.803852 eV Total energy + Delta-G solvation = -2424.254436 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.15572 -38.30821 -36.07872 -33.43413 -31.80636 -30.86332 -28.78642 -28.00034 -25.52345 -23.56363 -22.46116 -21.20899 -19.35582 -18.80328 -18.29259 -16.99385 -16.06910 -15.73933 -15.33976 -14.98101 -14.59878 -14.42584 -14.05263 -13.53628 -13.25553 -12.91972 -12.83640 -12.61300 -12.40975 -12.18265 -12.03937 -11.80414 -11.51589 -11.42849 -10.89723 -10.61492 -10.20012 -9.15699 -8.78650 -7.77821 -5.24722 1.22727 1.45580 1.46145 1.57398 1.99795 2.24148 2.53922 3.35068 3.63190 3.90214 4.13394 4.21327 4.33512 4.58862 4.64274 4.71617 4.83024 4.86311 5.04474 5.07069 5.20034 5.30314 5.33390 5.47178 5.54043 5.61545 5.66337 5.72676 5.95367 6.33378 6.71742 7.04404 7.19215 7.90159 8.34574 9.25505 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.037356 B = 0.009391 C = 0.008273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.371526 B = 2980.973772 C = 3383.645008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.195 3.805 2 N -0.598 5.598 3 C -0.257 4.257 4 H 0.073 0.927 5 C -0.058 4.058 6 N -0.939 5.939 7 Si 0.971 3.029 8 H -0.263 1.263 9 H -0.297 1.297 10 H -0.289 1.289 11 C 0.238 3.762 12 H 0.063 0.937 13 C -0.116 4.116 14 C -0.108 4.108 15 C -0.031 4.031 16 C -0.260 4.260 17 C 0.063 3.937 18 N -0.494 5.494 19 H 0.443 0.557 20 N -0.323 5.323 21 C 0.056 3.944 22 H -0.011 1.011 23 H 0.022 0.978 24 H 0.018 0.982 25 H 0.244 0.756 26 H 0.066 0.934 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.167 -15.993 1.424 16.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.319 5.319 3 C -0.387 4.387 4 H 0.091 0.909 5 C -0.252 4.252 6 N -0.587 5.587 7 Si 0.799 3.201 8 H -0.187 1.187 9 H -0.225 1.225 10 H -0.216 1.216 11 C 0.129 3.871 12 H 0.081 0.919 13 C -0.155 4.155 14 C -0.145 4.145 15 C -0.069 4.069 16 C -0.272 4.272 17 C -0.083 4.083 18 N -0.203 5.203 19 H 0.288 0.712 20 N -0.145 5.145 21 C -0.115 4.115 22 H 0.007 0.993 23 H 0.040 0.960 24 H 0.037 0.963 25 H 0.053 0.947 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.109 0.891 30 H 0.112 0.888 31 H 0.090 0.910 32 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 2.133 -14.859 0.589 15.022 hybrid contribution -0.118 0.859 -0.473 0.987 sum 2.015 -14.000 0.116 14.145 Atomic orbital electron populations 1.20296 0.82982 0.95101 0.96611 1.44084 1.01818 1.00841 1.85173 1.19655 0.97072 0.86073 1.35942 0.90897 1.25808 0.98483 1.01832 0.99088 1.70326 1.18610 1.26622 1.43096 0.85137 0.78218 0.79908 0.76798 1.18725 1.22473 1.21595 1.19284 0.94964 0.83912 0.88923 0.91893 1.21913 1.01004 0.96171 0.96460 1.21529 0.99442 0.93653 0.99923 1.20020 1.00660 0.96675 0.89510 1.20642 1.15379 0.93683 0.97506 1.22695 1.00639 0.94541 0.90412 1.46614 1.56919 1.05599 1.11147 0.71179 1.77282 1.22417 1.09607 1.05149 1.23677 0.98890 0.95052 0.93887 0.99285 0.95977 0.96333 0.94697 0.91577 0.92724 0.92092 0.89074 0.88806 0.90958 0.76356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.20 10.66 8.27 127.77 1.06 11.72 16 2 N -0.60 -32.23 2.83 -705.84 -2.00 -34.23 16 3 C -0.26 -15.03 9.63 84.04 0.81 -14.22 16 4 H 0.07 4.11 7.80 -2.91 -0.02 4.08 16 5 C -0.06 -3.44 5.13 84.86 0.44 -3.00 16 6 N -0.94 -59.49 10.51 21.65 0.23 -59.27 16 7 Si 0.97 47.62 29.57 68.60 2.03 49.64 16 8 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 9 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 10 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 11 C 0.24 10.56 2.97 44.45 0.13 10.69 16 12 H 0.06 2.87 7.86 -2.39 -0.02 2.86 16 13 C -0.12 -3.96 5.29 30.73 0.16 -3.80 16 14 C -0.11 -2.66 5.86 30.73 0.18 -2.48 16 15 C -0.03 -0.71 6.28 30.04 0.19 -0.52 16 16 C -0.26 -8.19 5.89 -20.10 -0.12 -8.31 16 17 C 0.06 1.64 11.95 83.33 1.00 2.64 16 18 N -0.49 -16.04 7.37 -57.88 -0.43 -16.46 16 19 H 0.44 11.20 8.96 -213.20 -1.91 9.28 16 20 N -0.32 -14.85 12.68 -47.14 -0.60 -15.45 16 21 C 0.06 2.37 6.14 43.44 0.27 2.64 16 22 H -0.01 -0.69 7.41 -2.39 -0.02 -0.71 16 23 H 0.02 1.05 6.33 -2.39 -0.02 1.04 16 24 H 0.02 1.06 7.14 -2.39 -0.02 1.04 16 25 H 0.24 14.96 8.31 -92.70 -0.77 14.19 16 26 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 27 H 0.05 1.96 6.35 -2.39 -0.02 1.94 16 28 H 0.06 1.52 8.10 -2.39 -0.02 1.50 16 29 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 30 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.22 3.13 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -76.30 260.59 2.55 -73.75 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -0.79 Total: 6.67 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: 4.11 Total: -4.65 kcal Atomic # 7 Polarization: -122.62 SS G_CDS: -2.80 Total: -125.41 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 2.03 Total: 49.64 kcal Total: -76.30 2.55 -73.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259744593.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.954 kcal (2) G-P(sol) polarization free energy of solvation -76.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds