Wall clock time and date at job start Mon Mar 30 2020 02:32:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46494 * 1
3 3 N 1.40375 * 126.08941 * 2 1
4 4 C 1.31161 * 108.28624 * 179.97438 * 3 2 1
5 5 C 1.39030 * 108.02881 * 359.97438 * 4 3 2
6 6 C 1.34111 * 126.09624 * 180.02562 * 2 1 3
7 7 C 1.50800 * 128.80041 * 0.22669 * 6 2 1
8 8 H 1.08993 * 109.70590 * 283.25730 * 7 6 2
9 9 C 1.53002 * 109.69965 * 43.87249 * 7 6 2
10 10 C 1.50702 * 109.46597 * 185.00105 * 9 7 6
11 11 H 1.07997 * 120.00318 * 359.97438 * 10 9 7
12 12 C 1.37887 * 119.99506 * 179.97438 * 10 9 7
13 13 N 1.31517 * 120.00114 * 0.02562 * 12 10 9
14 14 Si 1.86805 * 119.99691 * 179.97438 * 12 10 9
15 15 H 1.48500 * 109.46930 * 60.00196 * 14 12 10
16 16 H 1.48504 * 109.46870 * 180.02562 * 14 12 10
17 17 H 1.48502 * 109.47132 * 300.00079 * 14 12 10
18 18 N 1.47293 * 108.26644 * 163.55741 * 7 6 2
19 19 C 1.46942 * 111.48318 * 51.32073 * 18 7 6
20 20 C 1.50887 * 128.75987 * 180.23557 * 5 4 3
21 21 H 1.09010 * 109.47045 * 89.97703 * 1 2 3
22 22 H 1.08997 * 109.47301 * 209.97090 * 1 2 3
23 23 H 1.09005 * 109.47645 * 329.98030 * 1 2 3
24 24 H 1.07995 * 125.98644 * 179.97438 * 4 3 2
25 25 H 1.09006 * 109.47186 * 304.99368 * 9 7 6
26 26 H 1.08997 * 109.47425 * 64.99714 * 9 7 6
27 27 H 0.97004 * 119.99643 * 179.97438 * 13 12 10
28 28 H 1.00891 * 110.99929 * 175.62427 * 18 7 6
29 29 H 1.09000 * 109.44476 * 168.36596 * 19 18 7
30 30 H 1.09004 * 109.44708 * 48.47114 * 19 18 7
31 31 H 1.08997 * 109.79428 * 283.64855 * 20 5 4
32 32 H 1.08992 * 109.78993 * 44.44131 * 20 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4649 0.0000 0.0000
3 7 2.2918 1.1344 0.0000
4 6 3.5406 0.7333 0.0006
5 6 3.5461 -0.6569 0.0015
6 6 2.2550 -1.0837 -0.0005
7 6 1.8621 -2.5396 -0.0058
8 1 1.5360 -2.8358 0.9911
9 6 0.7284 -2.7641 -1.0084
10 6 0.2569 -4.1929 -0.9216
11 1 0.7198 -4.8727 -0.2217
12 6 -0.7656 -4.6320 -1.7358
13 7 -1.3290 -3.8042 -2.5884
14 14 -1.3496 -6.4032 -1.6287
15 1 -1.8407 -6.6802 -0.2549
16 1 -2.4501 -6.6212 -2.6017
17 1 -0.2219 -7.3162 -1.9448
18 7 3.0383 -3.3337 -0.4001
19 6 4.2161 -2.9887 0.4079
20 6 4.7264 -1.5969 0.0073
21 1 -0.3634 0.0004 -1.0278
22 1 -0.3634 -0.8902 0.5134
23 1 -0.3634 0.8898 0.5141
24 1 4.4120 1.3713 0.0003
25 1 -0.0994 -2.0937 -0.7770
26 1 1.0894 -2.5612 -2.0166
27 1 -2.0481 -4.1133 -3.1614
28 1 2.8412 -4.3218 -0.3485
29 1 5.0012 -3.7255 0.2379
30 1 3.9440 -2.9863 1.4634
31 1 5.1702 -1.6383 -0.9874
32 1 5.4681 -1.2536 0.7283
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000259744893.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:32:04
Heat of formation + Delta-G solvation = 75.273740 kcal
Electronic energy + Delta-G solvation = -15262.154425 eV
Core-core repulsion = 12838.076519 eV
Total energy + Delta-G solvation = -2424.077906 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 221.122 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-41.01585 -36.68205 -34.08534 -32.59436 -30.60397 -29.76730 -27.74834 -25.76711
-24.08243 -22.00381 -21.35726 -20.05304 -18.16795 -16.68094 -16.00391 -15.11549
-14.64563 -14.43893 -14.32536 -14.04120 -13.58492 -12.83297 -12.55197 -12.31232
-12.13595 -11.74163 -11.61377 -11.11170 -11.04978 -10.75032 -10.57132 -10.34023
-10.07814 -9.59554 -9.22753 -8.76450 -8.43980 -7.79805 -7.63922 -6.09037
-4.11902 2.40062 3.00676 3.26347 3.27769 3.33295 3.34752 4.38067
4.76524 5.03029 5.19750 5.28951 5.42717 5.55066 5.61303 5.68328
5.79888 5.97401 6.03716 6.07172 6.15367 6.32115 6.44989 6.54317
6.79900 7.15259 7.30253 7.51342 7.55325 7.81555 7.85091 8.09607
8.21553 8.27951 8.90918 9.51688 11.01923
Molecular weight = 221.12amu
Principal moments of inertia in cm(-1)
A = 0.034759 B = 0.008953 C = 0.007428
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 805.359118 B = 3126.569157 C = 3768.485479
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.100 3.900
2 N -0.356 5.356
3 N -0.318 5.318
4 C 0.047 3.953
5 C -0.256 4.256
6 C 0.112 3.888
7 C 0.155 3.845
8 H 0.046 0.954
9 C 0.026 3.974
10 C -0.519 4.519
11 H 0.053 0.947
12 C 0.061 3.939
13 N -0.892 5.892
14 Si 0.893 3.107
15 H -0.278 1.278
16 H -0.287 1.287
17 H -0.276 1.276
18 N -0.672 5.672
19 C 0.055 3.945
20 C -0.029 4.029
21 H 0.081 0.919
22 H 0.096 0.904
23 H 0.078 0.922
24 H 0.175 0.825
25 H 0.029 0.971
26 H 0.030 0.970
27 H 0.262 0.738
28 H 0.357 0.643
29 H 0.070 0.930
30 H 0.024 0.976
31 H 0.069 0.931
32 H 0.063 0.937
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.321 3.777 6.078 10.238
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.041 4.041
2 N -0.136 5.136
3 N -0.140 5.140
4 C -0.137 4.137
5 C -0.268 4.268
6 C -0.019 4.019
7 C 0.044 3.956
8 H 0.063 0.937
9 C -0.012 4.012
10 C -0.558 4.558
11 H 0.072 0.928
12 C -0.141 4.141
13 N -0.530 5.530
14 Si 0.721 3.279
15 H -0.204 1.204
16 H -0.213 1.213
17 H -0.201 1.201
18 N -0.306 5.306
19 C -0.075 4.075
20 C -0.068 4.068
21 H 0.099 0.901
22 H 0.114 0.886
23 H 0.097 0.903
24 H 0.192 0.808
25 H 0.047 0.953
26 H 0.048 0.952
27 H 0.072 0.928
28 H 0.178 0.822
29 H 0.089 0.911
30 H 0.042 0.958
31 H 0.087 0.913
32 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges 6.385 5.232 5.430 9.881
hybrid contribution -0.138 -2.002 0.726 2.134
sum 6.248 3.230 6.156 9.347
Atomic orbital electron populations
1.22054 0.74123 1.03805 1.04135 1.48008 1.06519 1.03240 1.55825
1.77452 1.01390 1.07945 1.27238 1.23329 0.95085 0.94428 1.00825
1.19818 0.94443 0.93415 1.19112 1.21251 0.90733 0.91466 0.98409
1.20394 0.92335 0.83818 0.99024 0.93671 1.19354 0.90235 0.97478
0.94109 1.21006 1.17954 0.95731 1.21083 0.92850 1.24965 0.96460
0.97482 0.95155 1.69938 1.25061 1.35080 1.22936 0.86651 0.78415
0.85140 0.77742 1.20357 1.21297 1.20141 1.60129 1.03383 1.10464
1.56635 1.21987 0.93866 0.96946 0.94665 1.19970 0.93748 0.92132
1.00974 0.90079 0.88585 0.90290 0.80770 0.95297 0.95151 0.92811
0.82193 0.91117 0.95765 0.91266 0.91872
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.10 1.69 9.70 59.84 0.58 2.27 16
2 N -0.36 -6.96 4.00 -63.88 -0.26 -7.21 16
3 N -0.32 -6.10 12.60 30.50 0.38 -5.71 16
4 C 0.05 0.81 12.01 -17.54 -0.21 0.60 16
5 C -0.26 -4.67 5.98 -105.05 -0.63 -5.30 16
6 C 0.11 2.26 6.28 -82.36 -0.52 1.74 16
7 C 0.16 3.23 2.59 -68.60 -0.18 3.05 16
8 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16
9 C 0.03 0.63 4.45 -27.88 -0.12 0.50 16
10 C -0.52 -13.61 8.58 -34.44 -0.30 -13.91 16
11 H 0.05 1.34 7.23 -52.49 -0.38 0.96 16
12 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16
13 N -0.89 -25.53 13.29 55.43 0.74 -24.80 16
14 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16
15 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16
16 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16
17 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16
18 N -0.67 -12.80 6.39 -107.27 -0.69 -13.49 16
19 C 0.06 0.85 6.52 -3.51 -0.02 0.83 16
20 C -0.03 -0.45 6.51 -27.50 -0.18 -0.62 16
21 H 0.08 1.42 7.95 -51.92 -0.41 1.00 16
22 H 0.10 1.61 6.71 -51.93 -0.35 1.26 16
23 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16
24 H 0.18 2.28 8.06 -52.49 -0.42 1.85 16
25 H 0.03 0.71 4.71 -51.93 -0.24 0.47 16
26 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16
27 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16
28 H 0.36 6.70 7.86 -39.30 -0.31 6.39 16
29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16
30 H 0.02 0.37 8.07 -51.93 -0.42 -0.05 16
31 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16
32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16
LS Contribution 262.98 15.07 3.96 3.96
Total: -1.00 -30.37 262.98 -6.76 -37.13
By element:
Atomic # 1 Polarization: 7.91 SS G_CDS: -4.21 Total: 3.70 kcal
Atomic # 6 Polarization: -7.60 SS G_CDS: -1.67 Total: -9.27 kcal
Atomic # 7 Polarization: -51.39 SS G_CDS: 0.18 Total: -51.21 kcal
Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal
Total LS contribution 3.96 Total: 3.96 kcal
Total: -30.37 -6.76 -37.13 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259744893.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 112.405 kcal
(2) G-P(sol) polarization free energy of solvation -30.372 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.033 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.759 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.131 kcal
(6) G-S(sol) free energy of system = (1) + (5) 75.274 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds