Wall clock time and date at job start Mon Mar 30 2020 02:32:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46494 * 1
3 3 N 1.40375 * 126.08941 * 2 1
4 4 C 1.31161 * 108.28624 * 179.97438 * 3 2 1
5 5 C 1.39030 * 108.02881 * 359.97438 * 4 3 2
6 6 C 1.34111 * 126.09624 * 180.02562 * 2 1 3
7 7 C 1.50800 * 128.80041 * 0.22669 * 6 2 1
8 8 H 1.08993 * 109.70590 * 283.25730 * 7 6 2
9 9 C 1.53002 * 109.69965 * 43.87249 * 7 6 2
10 10 C 1.50702 * 109.46597 * 185.00105 * 9 7 6
11 11 H 1.07997 * 120.00318 * 359.97438 * 10 9 7
12 12 C 1.37887 * 119.99506 * 179.97438 * 10 9 7
13 13 N 1.31517 * 120.00114 * 0.02562 * 12 10 9
14 14 Si 1.86805 * 119.99691 * 179.97438 * 12 10 9
15 15 H 1.48500 * 109.46930 * 60.00196 * 14 12 10
16 16 H 1.48504 * 109.46870 * 180.02562 * 14 12 10
17 17 H 1.48502 * 109.47132 * 300.00079 * 14 12 10
18 18 N 1.47293 * 108.26644 * 163.55741 * 7 6 2
19 19 C 1.46942 * 111.48318 * 51.32073 * 18 7 6
20 20 C 1.50887 * 128.75987 * 180.23557 * 5 4 3
21 21 H 1.09010 * 109.47045 * 89.97703 * 1 2 3
22 22 H 1.08997 * 109.47301 * 209.97090 * 1 2 3
23 23 H 1.09005 * 109.47645 * 329.98030 * 1 2 3
24 24 H 1.07995 * 125.98644 * 179.97438 * 4 3 2
25 25 H 1.09006 * 109.47186 * 304.99368 * 9 7 6
26 26 H 1.08997 * 109.47425 * 64.99714 * 9 7 6
27 27 H 0.97004 * 119.99643 * 179.97438 * 13 12 10
28 28 H 1.00891 * 110.99929 * 175.62427 * 18 7 6
29 29 H 1.09000 * 109.44476 * 168.36596 * 19 18 7
30 30 H 1.09004 * 109.44708 * 48.47114 * 19 18 7
31 31 H 1.08997 * 109.79428 * 283.64855 * 20 5 4
32 32 H 1.08992 * 109.78993 * 44.44131 * 20 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4649 0.0000 0.0000
3 7 2.2918 1.1344 0.0000
4 6 3.5406 0.7333 0.0006
5 6 3.5461 -0.6569 0.0015
6 6 2.2550 -1.0837 -0.0005
7 6 1.8621 -2.5396 -0.0058
8 1 1.5360 -2.8358 0.9911
9 6 0.7284 -2.7641 -1.0084
10 6 0.2569 -4.1929 -0.9216
11 1 0.7198 -4.8727 -0.2217
12 6 -0.7656 -4.6320 -1.7358
13 7 -1.3290 -3.8042 -2.5884
14 14 -1.3496 -6.4032 -1.6287
15 1 -1.8407 -6.6802 -0.2549
16 1 -2.4501 -6.6212 -2.6017
17 1 -0.2219 -7.3162 -1.9448
18 7 3.0383 -3.3337 -0.4001
19 6 4.2161 -2.9887 0.4079
20 6 4.7264 -1.5969 0.0073
21 1 -0.3634 0.0004 -1.0278
22 1 -0.3634 -0.8902 0.5134
23 1 -0.3634 0.8898 0.5141
24 1 4.4120 1.3713 0.0003
25 1 -0.0994 -2.0937 -0.7770
26 1 1.0894 -2.5612 -2.0166
27 1 -2.0481 -4.1133 -3.1614
28 1 2.8412 -4.3218 -0.3485
29 1 5.0012 -3.7255 0.2379
30 1 3.9440 -2.9863 1.4634
31 1 5.1702 -1.6383 -0.9874
32 1 5.4681 -1.2536 0.7283
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000259744893.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:32:04
Heat of formation + Delta-G solvation = 54.099226 kcal
Electronic energy + Delta-G solvation = -15263.072621 eV
Core-core repulsion = 12838.076519 eV
Total energy + Delta-G solvation = -2424.996102 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 221.122 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-42.43388 -38.16056 -35.69866 -34.40127 -32.14471 -31.22468 -29.40776 -27.28498
-25.80909 -23.31655 -23.08278 -21.49307 -19.60784 -18.53776 -17.63272 -16.71039
-16.35467 -15.97184 -15.73684 -15.46180 -14.91889 -14.54629 -14.00360 -13.76788
-13.59808 -13.41343 -13.12640 -12.76842 -12.74766 -12.34635 -12.17220 -12.10275
-11.44327 -11.34617 -11.18070 -10.52380 -10.23219 -9.24596 -9.07733 -8.16886
-6.26405 0.93192 1.43813 1.45699 1.52905 1.62331 1.90502 2.43146
3.14929 3.39010 3.68627 3.76290 4.17809 4.26283 4.30632 4.37099
4.42224 4.57644 4.61558 4.64021 4.92230 4.97941 5.09559 5.26971
5.38518 5.40679 5.55027 5.79486 5.85001 6.04817 6.18556 6.28406
6.64802 6.80152 6.85429 7.41413 8.94479
Molecular weight = 221.12amu
Principal moments of inertia in cm(-1)
A = 0.034759 B = 0.008953 C = 0.007428
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 805.359118 B = 3126.569157 C = 3768.485479
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.101 3.899
2 N -0.370 5.370
3 N -0.337 5.337
4 C 0.052 3.948
5 C -0.258 4.258
6 C 0.078 3.922
7 C 0.168 3.832
8 H 0.043 0.957
9 C 0.036 3.964
10 C -0.528 4.528
11 H 0.064 0.936
12 C 0.006 3.994
13 N -0.930 5.930
14 Si 0.961 3.039
15 H -0.267 1.267
16 H -0.289 1.289
17 H -0.268 1.268
18 N -0.686 5.686
19 C 0.054 3.946
20 C -0.028 4.028
21 H 0.065 0.935
22 H 0.090 0.910
23 H 0.106 0.894
24 H 0.217 0.783
25 H 0.020 0.980
26 H -0.015 1.015
27 H 0.262 0.738
28 H 0.355 0.645
29 H 0.100 0.900
30 H 0.028 0.972
31 H 0.071 0.929
32 H 0.098 0.902
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.978 3.328 7.192 11.975
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.040 4.040
2 N -0.150 5.150
3 N -0.159 5.159
4 C -0.132 4.132
5 C -0.269 4.269
6 C -0.052 4.052
7 C 0.056 3.944
8 H 0.060 0.940
9 C -0.001 4.001
10 C -0.566 4.566
11 H 0.082 0.918
12 C -0.193 4.193
13 N -0.571 5.571
14 Si 0.786 3.214
15 H -0.192 1.192
16 H -0.215 1.215
17 H -0.193 1.193
18 N -0.320 5.320
19 C -0.075 4.075
20 C -0.067 4.067
21 H 0.084 0.916
22 H 0.108 0.892
23 H 0.124 0.876
24 H 0.233 0.767
25 H 0.038 0.962
26 H 0.004 0.996
27 H 0.071 0.929
28 H 0.176 0.824
29 H 0.118 0.882
30 H 0.047 0.953
31 H 0.090 0.910
32 H 0.117 0.883
Dipole moment (debyes) X Y Z Total
from point charges 8.059 4.778 6.561 11.438
hybrid contribution -0.591 -1.799 0.373 1.930
sum 7.468 2.979 6.935 10.617
Atomic orbital electron populations
1.22054 0.73615 1.04862 1.03465 1.48227 1.07132 1.03312 1.56363
1.77410 1.02425 1.08196 1.27881 1.24010 0.95543 0.94598 0.99042
1.20332 0.94629 0.94480 1.17501 1.21362 0.92086 0.91191 1.00571
1.20020 0.91939 0.85109 0.97321 0.93969 1.19142 0.91471 0.96764
0.92759 1.21405 1.17682 0.96638 1.20836 0.91789 1.25852 0.96768
1.01784 0.94858 1.70085 1.25771 1.37178 1.24021 0.85558 0.77868
0.79931 0.77996 1.19226 1.21504 1.19267 1.60106 1.03807 1.10129
1.57976 1.22144 0.92930 0.98106 0.94299 1.20113 0.93224 0.91121
1.02195 0.91601 0.89159 0.87563 0.76674 0.96158 0.99623 0.92948
0.82420 0.88196 0.95340 0.91049 0.88325
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.10 3.50 9.70 127.77 1.24 4.74 16
2 N -0.37 -14.49 4.00 -356.01 -1.42 -15.91 16
3 N -0.34 -12.53 12.60 -57.41 -0.72 -13.25 16
4 C 0.05 1.64 12.01 84.98 1.02 2.66 16
5 C -0.26 -8.88 5.98 -20.14 -0.12 -9.00 16
6 C 0.08 3.13 6.28 41.72 0.26 3.39 16
7 C 0.17 7.01 2.59 44.13 0.11 7.12 16
8 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16
9 C 0.04 1.83 4.45 29.85 0.13 1.97 16
10 C -0.53 -28.01 8.58 25.60 0.22 -27.79 16
11 H 0.06 3.18 7.23 -2.91 -0.02 3.16 16
12 C 0.01 0.30 5.46 84.66 0.46 0.77 16
13 N -0.93 -54.71 13.29 21.45 0.28 -54.42 16
14 Si 0.96 42.55 29.54 68.60 2.03 44.57 16
15 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16
16 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16
17 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16
18 N -0.69 -25.59 6.39 -493.30 -3.15 -28.75 16
19 C 0.05 1.53 6.52 86.48 0.56 2.09 16
20 C -0.03 -0.76 6.51 30.09 0.20 -0.56 16
21 H 0.07 2.44 7.95 -2.38 -0.02 2.42 16
22 H 0.09 3.17 6.71 -2.39 -0.02 3.16 16
23 H 0.11 3.00 8.14 -2.38 -0.02 2.98 16
24 H 0.22 4.75 8.06 -2.91 -0.02 4.73 16
25 H 0.02 1.05 4.71 -2.38 -0.01 1.04 16
26 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16
27 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16
28 H 0.36 13.08 7.86 -89.70 -0.71 12.38 16
29 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16
30 H 0.03 0.79 8.07 -2.38 -0.02 0.77 16
31 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16
32 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16
Total: -1.00 -65.81 262.98 1.52 -64.29
By element:
Atomic # 1 Polarization: 17.65 SS G_CDS: 0.42 Total: 18.07 kcal
Atomic # 6 Polarization: -18.70 SS G_CDS: 4.09 Total: -14.61 kcal
Atomic # 7 Polarization: -107.31 SS G_CDS: -5.02 Total: -112.33 kcal
Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.57 kcal
Total: -65.81 1.52 -64.29 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259744893.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 118.391 kcal
(2) G-P(sol) polarization free energy of solvation -65.812 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.579 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.520 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.292 kcal
(6) G-S(sol) free energy of system = (1) + (5) 54.099 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds