Wall clock time and date at job start Mon Mar 30 2020 02:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.34965 * 125.97038 * 2 1 4 4 C 1.35255 * 107.85745 * 179.72363 * 3 2 1 5 5 C 1.40416 * 107.86248 * 0.42651 * 4 3 2 6 6 N 1.39993 * 125.97280 * 179.82959 * 5 4 3 7 7 C 1.48807 * 111.18531 * 62.38297 * 6 5 4 8 8 C 1.54931 * 103.35110 * 159.50547 * 7 6 5 9 9 C 1.54601 * 102.92048 * 322.69020 * 8 7 6 10 10 C 1.47905 * 110.99986 * 179.71813 * 6 5 4 11 11 H 1.09008 * 109.91220 * 333.70411 * 10 6 5 12 12 C 1.50694 * 109.91742 * 94.80190 * 10 6 5 13 13 H 1.08000 * 120.00563 * 359.59772 * 12 10 6 14 14 C 1.37885 * 119.99902 * 179.59935 * 12 10 6 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.46985 * 179.97438 * 16 14 12 18 18 H 1.48494 * 109.47276 * 299.99832 * 16 14 12 19 19 H 1.48498 * 109.47150 * 60.00043 * 16 14 12 20 20 N 1.31227 * 108.05290 * 359.56480 * 5 4 3 21 21 H 1.08996 * 109.47114 * 269.97967 * 1 2 3 22 22 H 1.09004 * 109.46418 * 29.97931 * 1 2 3 23 23 H 1.08991 * 109.46553 * 149.97681 * 1 2 3 24 24 H 1.07998 * 126.06989 * 0.02562 * 3 2 1 25 25 H 1.08000 * 126.06399 * 180.29545 * 4 3 2 26 26 H 1.08995 * 110.52365 * 41.06713 * 7 6 5 27 27 H 1.09010 * 110.84032 * 278.08798 * 7 6 5 28 28 H 1.08998 * 110.73233 * 204.32806 * 8 7 6 29 29 H 1.09009 * 110.87832 * 81.11517 * 8 7 6 30 30 H 1.08996 * 110.30410 * 263.04115 * 9 8 7 31 31 H 1.09007 * 110.30893 * 140.87440 * 9 8 7 32 32 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2578 1.0923 0.0000 4 6 3.5433 0.6718 0.0062 5 6 3.5372 -0.7323 0.0002 6 7 4.6666 -1.5596 0.0004 7 6 5.4765 -1.3637 1.2333 8 6 6.3179 -2.6618 1.3186 9 6 5.3313 -3.7462 0.8279 10 6 4.2783 -2.9867 -0.0002 11 1 3.2940 -3.1038 0.4535 12 6 4.2584 -3.5128 -1.4122 13 1 4.5017 -2.8581 -2.2359 14 6 3.9296 -4.8301 -1.6525 15 7 3.6338 -5.6276 -0.6494 16 14 3.9043 -5.4820 -3.4028 17 1 3.5236 -6.9174 -3.3910 18 1 2.9167 -4.7141 -4.2028 19 1 5.2530 -5.3331 -4.0061 20 7 2.2878 -1.1336 0.0002 21 1 -0.3633 -0.0004 1.0276 22 1 -0.3632 0.8902 -0.5135 23 1 -0.3632 -0.8897 -0.5142 24 1 1.9248 2.1197 0.0004 25 1 4.4190 1.3039 0.0123 26 1 4.8289 -1.2671 2.1046 27 1 6.1234 -0.4915 1.1378 28 1 6.6246 -2.8560 2.3463 29 1 7.1867 -2.6055 0.6625 30 1 4.8600 -4.2409 1.6771 31 1 5.8494 -4.4748 0.2043 32 1 3.4021 -6.5542 -0.8185 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259748537.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:59 Heat of formation + Delta-G solvation = 95.216608 kcal Electronic energy + Delta-G solvation = -15229.883843 eV Core-core repulsion = 12806.670724 eV Total energy + Delta-G solvation = -2423.213118 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.56274 -37.67061 -33.03450 -32.31604 -30.15317 -29.17748 -28.03651 -25.49790 -24.19550 -21.18584 -20.83136 -19.49525 -18.59909 -16.74326 -16.13066 -14.97210 -14.94233 -14.66996 -13.94384 -13.40572 -13.11288 -12.74299 -12.41671 -12.22884 -11.92042 -11.79577 -11.30917 -10.93584 -10.68053 -10.45133 -10.20237 -9.95699 -9.75175 -9.50802 -9.22941 -8.66488 -8.26104 -8.12891 -7.15596 -5.88911 -3.88226 2.47782 3.05327 3.41450 3.44038 3.48062 3.49050 4.51307 4.84270 5.02481 5.24960 5.39479 5.41775 5.60081 5.65304 5.83978 5.93497 6.05412 6.19811 6.26855 6.43626 6.59365 6.63703 6.84432 7.10720 7.17131 7.35075 7.58275 7.76259 7.85686 8.09148 8.39227 8.53250 8.66138 9.15238 9.72770 11.20766 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.024134 B = 0.010792 C = 0.008388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.889788 B = 2593.973006 C = 3337.384211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.388 5.388 3 C 0.047 3.953 4 C -0.278 4.278 5 C 0.264 3.736 6 N -0.437 5.437 7 C 0.049 3.951 8 C -0.129 4.129 9 C -0.100 4.100 10 C 0.200 3.800 11 H 0.037 0.963 12 C -0.485 4.485 13 H 0.059 0.941 14 C 0.058 3.942 15 N -0.896 5.896 16 Si 0.895 3.105 17 H -0.289 1.289 18 H -0.279 1.279 19 H -0.277 1.277 20 N -0.302 5.302 21 H 0.066 0.934 22 H 0.078 0.922 23 H 0.086 0.914 24 H 0.165 0.835 25 H 0.140 0.860 26 H 0.038 0.962 27 H 0.071 0.929 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.044 0.956 31 H 0.073 0.927 32 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.234 11.181 3.848 12.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.171 5.171 3 C -0.099 4.099 4 C -0.309 4.309 5 C 0.005 3.995 6 N -0.159 5.159 7 C -0.078 4.078 8 C -0.167 4.167 9 C -0.140 4.140 10 C 0.095 3.905 11 H 0.055 0.945 12 C -0.524 4.524 13 H 0.077 0.923 14 C -0.143 4.143 15 N -0.535 5.535 16 Si 0.723 3.277 17 H -0.215 1.215 18 H -0.205 1.205 19 H -0.203 1.203 20 N -0.129 5.129 21 H 0.084 0.916 22 H 0.097 0.903 23 H 0.105 0.895 24 H 0.182 0.818 25 H 0.158 0.842 26 H 0.056 0.944 27 H 0.090 0.910 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.924 10.105 3.416 11.060 hybrid contribution -0.061 0.183 -0.419 0.461 sum -2.984 10.288 2.997 11.123 Atomic orbital electron populations 1.21664 0.75213 1.03854 1.02492 1.48301 1.06055 1.03968 1.58808 1.22279 0.91097 0.93088 1.03459 1.21145 0.96601 0.93930 1.19272 1.21125 0.89660 0.92117 0.96567 1.62377 1.12468 1.08026 1.33049 1.23138 0.95657 0.98703 0.90348 1.22573 0.98860 0.95470 0.99791 1.22372 0.96263 0.96765 0.98556 1.20093 0.94322 0.79026 0.97037 0.94522 1.20941 1.45076 0.94754 0.91658 0.92312 1.24887 0.95647 0.96877 0.96881 1.69977 1.47440 1.05847 1.30241 0.86613 0.78408 0.77459 0.85203 1.21483 1.20522 1.20307 1.77883 1.01242 1.05555 1.28216 0.91558 0.90330 0.89547 0.81813 0.84172 0.94383 0.91010 0.92473 0.91472 0.93739 0.90803 0.93158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.36 11.47 59.85 0.69 2.05 16 2 N -0.39 -6.92 4.01 -68.17 -0.27 -7.20 16 3 C 0.05 0.73 11.48 -17.24 -0.20 0.53 16 4 C -0.28 -5.08 10.60 -39.82 -0.42 -5.50 16 5 C 0.26 5.99 6.41 -154.54 -0.99 5.00 16 6 N -0.44 -10.37 5.01 -162.44 -0.81 -11.18 16 7 C 0.05 0.96 6.35 -1.75 -0.01 0.95 16 8 C -0.13 -2.51 7.06 -24.87 -0.18 -2.69 16 9 C -0.10 -2.45 5.64 -25.37 -0.14 -2.60 16 10 C 0.20 5.39 2.19 -67.80 -0.15 5.24 16 11 H 0.04 1.11 6.84 -51.92 -0.35 0.76 16 12 C -0.49 -14.25 8.68 -34.44 -0.30 -14.55 16 13 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 14 C 0.06 1.68 5.09 -17.82 -0.09 1.59 16 15 N -0.90 -26.65 12.39 55.43 0.69 -25.96 16 16 Si 0.89 22.51 29.54 -169.99 -5.02 17.49 16 17 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 18 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 N -0.30 -7.09 11.05 31.41 0.35 -6.74 16 21 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 22 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 23 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 24 H 0.16 1.72 8.06 -52.49 -0.42 1.30 16 25 H 0.14 2.22 8.06 -52.49 -0.42 1.80 16 26 H 0.04 0.73 8.00 -51.93 -0.42 0.32 16 27 H 0.07 1.21 8.14 -51.92 -0.42 0.79 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.07 1.26 8.14 -51.92 -0.42 0.84 16 30 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.07 1.95 7.28 -51.92 -0.38 1.57 16 32 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 269.64 15.07 4.06 4.06 Total: -1.00 -33.84 269.64 -7.30 -41.14 By element: Atomic # 1 Polarization: 2.87 SS G_CDS: -4.50 Total: -1.63 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: -1.79 Total: -9.99 kcal Atomic # 7 Polarization: -51.03 SS G_CDS: -0.05 Total: -51.08 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -33.84 -7.30 -41.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259748537.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.356 kcal (2) G-P(sol) polarization free energy of solvation -33.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds