Wall clock time and date at job start Mon Mar 30 2020 02:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.34965 * 125.97038 * 2 1 4 4 C 1.35255 * 107.85745 * 179.72363 * 3 2 1 5 5 C 1.40416 * 107.86248 * 0.42651 * 4 3 2 6 6 N 1.39993 * 125.97280 * 179.82959 * 5 4 3 7 7 C 1.48807 * 111.18531 * 62.38297 * 6 5 4 8 8 C 1.54931 * 103.35110 * 159.50547 * 7 6 5 9 9 C 1.54601 * 102.92048 * 322.69020 * 8 7 6 10 10 C 1.47905 * 110.99986 * 179.71813 * 6 5 4 11 11 H 1.09008 * 109.91220 * 333.70411 * 10 6 5 12 12 C 1.50694 * 109.91742 * 94.80190 * 10 6 5 13 13 H 1.08000 * 120.00563 * 359.59772 * 12 10 6 14 14 C 1.37885 * 119.99902 * 179.59935 * 12 10 6 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.46985 * 179.97438 * 16 14 12 18 18 H 1.48494 * 109.47276 * 299.99832 * 16 14 12 19 19 H 1.48498 * 109.47150 * 60.00043 * 16 14 12 20 20 N 1.31227 * 108.05290 * 359.56480 * 5 4 3 21 21 H 1.08996 * 109.47114 * 269.97967 * 1 2 3 22 22 H 1.09004 * 109.46418 * 29.97931 * 1 2 3 23 23 H 1.08991 * 109.46553 * 149.97681 * 1 2 3 24 24 H 1.07998 * 126.06989 * 0.02562 * 3 2 1 25 25 H 1.08000 * 126.06399 * 180.29545 * 4 3 2 26 26 H 1.08995 * 110.52365 * 41.06713 * 7 6 5 27 27 H 1.09010 * 110.84032 * 278.08798 * 7 6 5 28 28 H 1.08998 * 110.73233 * 204.32806 * 8 7 6 29 29 H 1.09009 * 110.87832 * 81.11517 * 8 7 6 30 30 H 1.08996 * 110.30410 * 263.04115 * 9 8 7 31 31 H 1.09007 * 110.30893 * 140.87440 * 9 8 7 32 32 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2578 1.0923 0.0000 4 6 3.5433 0.6718 0.0062 5 6 3.5372 -0.7323 0.0002 6 7 4.6666 -1.5596 0.0004 7 6 5.4765 -1.3637 1.2333 8 6 6.3179 -2.6618 1.3186 9 6 5.3313 -3.7462 0.8279 10 6 4.2783 -2.9867 -0.0002 11 1 3.2940 -3.1038 0.4535 12 6 4.2584 -3.5128 -1.4122 13 1 4.5017 -2.8581 -2.2359 14 6 3.9296 -4.8301 -1.6525 15 7 3.6338 -5.6276 -0.6494 16 14 3.9043 -5.4820 -3.4028 17 1 3.5236 -6.9174 -3.3910 18 1 2.9167 -4.7141 -4.2028 19 1 5.2530 -5.3331 -4.0061 20 7 2.2878 -1.1336 0.0002 21 1 -0.3633 -0.0004 1.0276 22 1 -0.3632 0.8902 -0.5135 23 1 -0.3632 -0.8897 -0.5142 24 1 1.9248 2.1197 0.0004 25 1 4.4190 1.3039 0.0123 26 1 4.8289 -1.2671 2.1046 27 1 6.1234 -0.4915 1.1378 28 1 6.6246 -2.8560 2.3463 29 1 7.1867 -2.6055 0.6625 30 1 4.8600 -4.2409 1.6771 31 1 5.8494 -4.4748 0.2043 32 1 3.4021 -6.5542 -0.8185 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259748537.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:58 Heat of formation + Delta-G solvation = 71.731267 kcal Electronic energy + Delta-G solvation = -15230.902243 eV Core-core repulsion = 12806.670724 eV Total energy + Delta-G solvation = -2424.231519 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.00200 -39.39518 -34.87343 -34.06172 -31.59869 -30.76925 -29.94586 -26.80394 -26.24891 -22.87180 -22.29851 -21.10888 -20.31817 -18.26353 -18.11938 -16.77285 -16.45009 -16.25054 -15.74525 -14.80375 -14.61088 -14.17050 -14.10982 -13.95633 -13.30950 -13.21917 -12.94746 -12.82599 -12.58839 -12.44910 -11.97412 -11.81289 -11.63946 -11.20394 -11.03940 -10.51062 -10.41309 -9.58228 -8.80447 -8.11240 -6.18694 1.15342 1.36706 1.39923 1.47477 1.81890 2.01186 2.41838 3.17974 3.32315 3.82705 4.03069 4.17685 4.24109 4.37271 4.48204 4.63758 4.65572 4.72733 4.82110 4.96437 4.99700 5.10306 5.25072 5.25708 5.40462 5.51062 5.67442 5.80647 6.05466 6.40670 6.45262 6.64134 6.86472 7.11675 7.46421 8.97192 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.024134 B = 0.010792 C = 0.008388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.889788 B = 2593.973006 C = 3337.384211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.390 5.390 3 C 0.075 3.925 4 C -0.299 4.299 5 C 0.233 3.767 6 N -0.452 5.452 7 C 0.052 3.948 8 C -0.116 4.116 9 C -0.097 4.097 10 C 0.206 3.794 11 H -0.008 1.008 12 C -0.503 4.503 13 H 0.040 0.960 14 C 0.011 3.989 15 N -0.922 5.922 16 Si 0.958 3.042 17 H -0.279 1.279 18 H -0.280 1.280 19 H -0.267 1.267 20 N -0.372 5.372 21 H 0.084 0.916 22 H 0.125 0.875 23 H 0.068 0.932 24 H 0.226 0.774 25 H 0.162 0.838 26 H 0.036 0.964 27 H 0.106 0.894 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.029 0.971 31 H 0.046 0.954 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.192 13.516 3.721 14.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.173 5.173 3 C -0.071 4.071 4 C -0.330 4.330 5 C -0.025 4.025 6 N -0.174 5.174 7 C -0.075 4.075 8 C -0.153 4.153 9 C -0.136 4.136 10 C 0.100 3.900 11 H 0.010 0.990 12 C -0.542 4.542 13 H 0.059 0.941 14 C -0.188 4.188 15 N -0.561 5.561 16 Si 0.783 3.217 17 H -0.204 1.204 18 H -0.206 1.206 19 H -0.192 1.192 20 N -0.200 5.200 21 H 0.103 0.897 22 H 0.143 0.857 23 H 0.087 0.913 24 H 0.242 0.758 25 H 0.180 0.820 26 H 0.054 0.946 27 H 0.125 0.875 28 H 0.109 0.891 29 H 0.095 0.905 30 H 0.048 0.952 31 H 0.065 0.935 32 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.881 12.449 3.297 13.197 hybrid contribution -0.209 -0.450 -0.351 0.607 sum -3.090 12.000 2.947 12.737 Atomic orbital electron populations 1.22079 0.72479 1.05310 1.04192 1.48686 1.07639 1.03330 1.57675 1.23137 0.89770 0.94753 0.99472 1.21451 0.98875 0.91935 1.20729 1.21448 0.89269 0.93924 0.97818 1.62331 1.13747 1.06132 1.35234 1.23265 0.95423 0.99871 0.88911 1.22546 0.97729 0.93298 1.01773 1.22161 0.96767 0.97416 0.97290 1.19764 0.92827 0.81816 0.95605 0.99024 1.21139 1.45486 0.95025 0.92545 0.94123 1.25658 0.95154 0.97020 1.00922 1.70096 1.47879 1.06018 1.32147 0.85628 0.78689 0.77076 0.80307 1.20394 1.20627 1.19208 1.77741 1.02573 1.09249 1.30485 0.89733 0.85652 0.91290 0.75799 0.82002 0.94589 0.87546 0.89097 0.90461 0.95169 0.93511 0.93060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.25 11.47 127.77 1.47 3.71 16 2 N -0.39 -13.31 4.01 -369.60 -1.48 -14.79 16 3 C 0.08 2.08 11.48 83.52 0.96 3.04 16 4 C -0.30 -10.33 10.60 22.11 0.23 -10.09 16 5 C 0.23 10.65 6.41 133.38 0.86 11.51 16 6 N -0.45 -21.82 5.01 -667.83 -3.35 -25.17 16 7 C 0.05 1.98 6.35 86.59 0.55 2.53 16 8 C -0.12 -4.40 7.06 31.80 0.22 -4.17 16 9 C -0.10 -4.91 5.64 31.47 0.18 -4.73 16 10 C 0.21 11.60 2.19 44.31 0.10 11.69 16 11 H -0.01 -0.51 6.84 -2.38 -0.02 -0.53 16 12 C -0.50 -30.77 8.68 25.60 0.22 -30.55 16 13 H 0.04 2.56 7.81 -2.91 -0.02 2.53 16 14 C 0.01 0.64 5.09 84.66 0.43 1.07 16 15 N -0.92 -56.82 12.39 21.45 0.27 -56.55 16 16 Si 0.96 47.20 29.54 68.60 2.03 49.22 16 17 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 18 H -0.28 -13.77 7.11 99.48 0.71 -13.06 16 19 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 20 N -0.37 -17.89 11.05 -54.55 -0.60 -18.50 16 21 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 22 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 23 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 24 H 0.23 3.27 8.06 -2.91 -0.02 3.24 16 25 H 0.16 4.66 8.06 -2.91 -0.02 4.63 16 26 H 0.04 1.37 8.00 -2.39 -0.02 1.35 16 27 H 0.11 3.30 8.14 -2.38 -0.02 3.28 16 28 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 29 H 0.08 2.78 8.14 -2.38 -0.02 2.77 16 30 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.05 2.56 7.28 -2.38 -0.02 2.54 16 32 H 0.26 15.23 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -78.82 269.64 3.17 -75.65 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: 1.09 Total: 6.13 kcal Atomic # 6 Polarization: -21.21 SS G_CDS: 5.22 Total: -16.00 kcal Atomic # 7 Polarization: -109.84 SS G_CDS: -5.17 Total: -115.01 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 2.03 Total: 49.22 kcal Total: -78.82 3.17 -75.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259748537.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.383 kcal (2) G-P(sol) polarization free energy of solvation -78.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds