Wall clock time and date at job start Mon Mar 30 2020 02:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46857 * 110.99937 * 2 1 4 4 C 1.53551 * 109.86398 * 162.44725 * 3 2 1 5 5 C 1.50936 * 107.63705 * 49.78246 * 4 3 2 6 6 C 1.34292 * 129.19405 * 163.93616 * 5 4 3 7 7 C 1.50693 * 126.21641 * 0.36316 * 6 5 4 8 8 C 1.50700 * 109.47048 * 84.99852 * 7 6 5 9 9 H 1.07999 * 120.00563 * 359.97438 * 8 7 6 10 10 C 1.37878 * 119.99986 * 180.02562 * 8 7 6 11 11 N 1.31516 * 119.99822 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 120.00242 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.46843 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47241 * 119.99363 * 12 10 8 15 15 H 1.48498 * 109.46988 * 239.99863 * 12 10 8 16 16 N 1.35285 * 107.56972 * 180.35949 * 6 5 4 17 17 H 0.97000 * 125.99037 * 179.97438 * 16 6 5 18 18 N 1.40372 * 108.01293 * 359.95601 * 16 6 5 19 19 C 1.29913 * 108.11929 * 359.94703 * 18 16 6 20 20 C 1.47306 * 110.99823 * 235.08828 * 2 1 3 21 21 H 1.08999 * 109.46692 * 180.96152 * 1 2 3 22 22 H 1.09002 * 109.46991 * 300.95529 * 1 2 3 23 23 H 1.09000 * 109.47202 * 60.95821 * 1 2 3 24 24 H 1.09000 * 109.40667 * 282.56928 * 3 2 1 25 25 H 1.09004 * 109.40708 * 42.32362 * 3 2 1 26 26 H 1.09000 * 109.82433 * 290.24273 * 4 3 2 27 27 H 1.09011 * 109.87640 * 169.34794 * 4 3 2 28 28 H 1.09001 * 109.47217 * 204.99609 * 7 6 5 29 29 H 1.09004 * 109.47234 * 325.00055 * 7 6 5 30 30 H 0.97006 * 119.99685 * 180.02562 * 11 10 8 31 31 H 1.08990 * 109.74901 * 296.20716 * 20 2 1 32 32 H 1.08997 * 109.74507 * 56.89350 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.4678 1.3647 0.4355 5 6 4.1834 0.3208 -0.3868 6 6 5.5014 0.1479 -0.5781 7 6 6.6045 0.9861 0.0147 8 6 6.9382 0.4755 1.3927 9 1 6.4045 -0.3710 1.7989 10 6 7.9241 1.0896 2.1355 11 7 8.5737 2.1208 1.6412 12 14 8.3382 0.4563 3.8434 13 1 7.4706 -0.7054 4.1643 14 1 9.7623 0.0373 3.8841 15 1 8.1105 1.5338 4.8395 16 7 5.6588 -0.9153 -1.3996 17 1 6.5041 -1.2738 -1.7124 18 7 4.3844 -1.4091 -1.7196 19 6 3.5020 -0.6727 -1.1139 20 6 1.9969 -0.7871 -1.1277 21 1 -0.3633 -1.0275 0.0172 22 1 -0.3633 0.5286 0.8813 23 1 -0.3633 0.4989 -0.8984 24 1 1.9162 1.7893 -1.0034 25 1 1.4155 1.9816 0.6922 26 1 3.5391 1.1144 1.4940 27 1 3.9114 2.3443 0.2567 28 1 7.4888 0.9241 -0.6197 29 1 6.2769 2.0236 0.0811 30 1 9.2677 2.5526 2.1636 31 1 1.7060 -1.8315 -1.0161 32 1 1.6057 -0.3940 -2.0661 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259809849.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:42 Heat of formation + Delta-G solvation = 45.791803 kcal Electronic energy + Delta-G solvation = -14964.993723 eV Core-core repulsion = 12539.637385 eV Total energy + Delta-G solvation = -2425.356338 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.33053 -38.61201 -35.59616 -33.62203 -33.07063 -31.02197 -28.52839 -28.19069 -25.33590 -24.77368 -22.81800 -20.94845 -19.64776 -18.60471 -17.93969 -16.58504 -16.44196 -16.06908 -15.89760 -15.21119 -14.40758 -14.32781 -14.26780 -14.10304 -13.43935 -13.20620 -13.02197 -12.73816 -12.66177 -12.50780 -12.36524 -11.97042 -11.71580 -11.61304 -11.27870 -10.63557 -10.18917 -9.20590 -9.11412 -8.24443 -6.36920 1.06758 1.39100 1.41275 1.53707 1.88966 1.99757 2.40777 3.00414 3.08235 3.63710 3.99316 4.13252 4.37086 4.44005 4.52208 4.62535 4.65868 4.73939 4.84811 4.92962 5.04176 5.12975 5.16027 5.24775 5.31559 5.60742 5.68979 5.82783 6.04834 6.08612 6.24687 6.53934 6.72249 6.86014 7.32167 8.85038 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.034244 B = 0.007824 C = 0.007097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.456229 B = 3577.656336 C = 3944.352924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.561 5.561 3 C 0.069 3.931 4 C -0.028 4.028 5 C -0.263 4.263 6 C 0.122 3.878 7 C 0.086 3.914 8 C -0.526 4.526 9 H 0.048 0.952 10 C 0.015 3.985 11 N -0.923 5.923 12 Si 0.962 3.038 13 H -0.271 1.271 14 H -0.276 1.276 15 H -0.273 1.273 16 N -0.488 5.488 17 H 0.441 0.559 18 N -0.319 5.319 19 C 0.069 3.931 20 C 0.149 3.851 21 H 0.079 0.921 22 H 0.081 0.919 23 H 0.037 0.963 24 H 0.039 0.961 25 H 0.098 0.902 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.014 0.986 29 H 0.030 0.970 30 H 0.268 0.732 31 H 0.102 0.898 32 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.621 -2.103 -3.411 14.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.287 5.287 3 C -0.059 4.059 4 C -0.067 4.067 5 C -0.274 4.274 6 C -0.005 4.005 7 C 0.048 3.952 8 C -0.564 4.564 9 H 0.066 0.934 10 C -0.184 4.184 11 N -0.563 5.563 12 Si 0.787 3.213 13 H -0.196 1.196 14 H -0.201 1.201 15 H -0.198 1.198 16 N -0.197 5.197 17 H 0.286 0.714 18 N -0.142 5.142 19 C -0.100 4.100 20 C 0.020 3.980 21 H 0.097 0.903 22 H 0.100 0.900 23 H 0.055 0.945 24 H 0.057 0.943 25 H 0.116 0.884 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.032 0.968 29 H 0.048 0.952 30 H 0.077 0.923 31 H 0.121 0.879 32 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -13.175 -3.189 -3.727 14.059 hybrid contribution 1.016 0.646 0.387 1.265 sum -12.159 -2.543 -3.340 12.863 Atomic orbital electron populations 1.22424 0.84378 1.03246 1.01726 1.61680 1.09519 1.14115 1.43362 1.22081 0.94503 0.88864 1.00466 1.19947 0.93855 0.95308 0.97547 1.19907 0.91557 1.05353 1.10561 1.21256 0.97256 0.90218 0.91781 1.17717 0.89483 0.93503 0.94527 1.21168 1.19413 1.15317 1.00546 0.93406 1.25762 0.95554 0.94911 1.02182 1.70047 1.24555 1.22374 1.39310 0.85434 0.78045 0.78485 0.79327 1.19599 1.20106 1.19842 1.46306 1.07388 1.25405 1.40649 0.71439 1.76620 0.88413 1.23232 1.25886 1.22636 0.97326 0.93875 0.96131 1.20445 0.84415 1.00056 0.93073 0.90267 0.90048 0.94464 0.94311 0.88372 0.92447 0.91673 0.96803 0.95157 0.92305 0.87948 0.91388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 9.54 127.69 1.22 1.74 16 2 N -0.56 -14.91 4.84 -924.43 -4.47 -19.38 16 3 C 0.07 1.87 5.51 86.50 0.48 2.35 16 4 C -0.03 -1.01 6.35 30.11 0.19 -0.82 16 5 C -0.26 -11.01 5.95 -20.09 -0.12 -11.13 16 6 C 0.12 5.56 6.38 41.12 0.26 5.83 16 7 C 0.09 4.47 5.37 29.10 0.16 4.62 16 8 C -0.53 -29.35 9.09 25.60 0.23 -29.12 16 9 H 0.05 2.73 7.74 -2.91 -0.02 2.71 16 10 C 0.02 0.84 5.46 84.65 0.46 1.30 16 11 N -0.92 -53.34 13.29 21.45 0.28 -53.06 16 12 Si 0.96 43.60 29.54 68.60 2.03 45.62 16 13 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 14 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 15 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 16 N -0.49 -20.19 7.38 -48.40 -0.36 -20.54 16 17 H 0.44 16.00 8.96 -213.14 -1.91 14.09 16 18 N -0.32 -12.80 12.67 -47.09 -0.60 -13.39 16 19 C 0.07 2.63 7.21 43.53 0.31 2.94 16 20 C 0.15 4.19 5.86 85.56 0.50 4.70 16 21 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 22 H 0.08 1.27 8.06 -2.39 -0.02 1.25 16 23 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 24 H 0.04 1.01 8.06 -2.39 -0.02 0.99 16 25 H 0.10 2.17 7.91 -2.38 -0.02 2.16 16 26 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 27 H 0.06 2.38 8.12 -2.38 -0.02 2.36 16 28 H 0.01 0.73 8.14 -2.39 -0.02 0.72 16 29 H 0.03 1.64 8.12 -2.38 -0.02 1.62 16 30 H 0.27 14.48 8.31 -92.70 -0.77 13.71 16 31 H 0.10 2.59 8.14 -2.39 -0.02 2.58 16 32 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -64.42 269.87 -0.21 -64.63 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -0.80 Total: 13.71 kcal Atomic # 6 Polarization: -21.29 SS G_CDS: 3.70 Total: -17.60 kcal Atomic # 7 Polarization: -101.23 SS G_CDS: -5.14 Total: -106.37 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Total: -64.42 -0.21 -64.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259809849.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.423 kcal (2) G-P(sol) polarization free energy of solvation -64.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds