Wall clock time and date at job start Mon Mar 30 2020 03:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99993 * 2 1 4 4 H 1.48499 * 109.47233 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.47278 * 240.00302 * 3 2 1 6 6 H 1.48501 * 109.47289 * 120.00275 * 3 2 1 7 7 C 1.37877 * 120.00328 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99749 * 342.70362 * 7 2 1 9 9 C 1.50702 * 120.00392 * 162.69986 * 7 2 1 10 10 H 1.09002 * 109.57545 * 54.13033 * 9 7 2 11 11 C 1.53378 * 109.57792 * 293.86930 * 9 7 2 12 12 C 1.53398 * 108.59427 * 181.35725 * 11 9 7 13 13 C 1.53126 * 108.95351 * 58.79788 * 12 11 9 14 14 N 1.46951 * 109.35023 * 0.02562 * 13 12 11 15 15 C 1.46948 * 110.96578 * 62.08324 * 14 13 12 16 16 C 1.53385 * 108.60053 * 299.15082 * 11 9 7 17 17 C 1.46898 * 111.05748 * 298.03742 * 14 13 12 18 18 H 1.08997 * 109.48733 * 181.95524 * 17 14 13 19 19 C 1.52996 * 109.49394 * 302.02028 * 17 14 13 20 20 C 1.53000 * 117.50202 * 253.36643 * 19 17 14 21 21 C 1.52995 * 117.50458 * 184.70117 * 19 17 14 22 22 H 0.96998 * 120.00043 * 182.29457 * 1 2 3 23 23 H 1.09003 * 110.11955 * 60.58859 * 11 9 7 24 24 H 1.09006 * 109.46193 * 298.99254 * 12 11 9 25 25 H 1.09003 * 109.68689 * 178.74047 * 12 11 9 26 26 H 1.08995 * 109.49282 * 240.05579 * 13 12 11 27 27 H 1.08997 * 109.49353 * 119.97702 * 13 12 11 28 28 H 1.08998 * 109.49196 * 57.87654 * 15 14 13 29 29 H 1.09001 * 109.48508 * 177.94375 * 15 14 13 30 30 H 1.09001 * 109.57842 * 60.80309 * 16 11 9 31 31 H 1.08999 * 109.57901 * 181.06209 * 16 11 9 32 32 H 1.09004 * 115.54374 * 39.02727 * 19 17 14 33 33 H 1.08996 * 117.49694 * 359.97438 * 20 19 17 34 34 H 1.08998 * 117.49832 * 145.01250 * 20 19 17 35 35 H 1.09000 * 117.49911 * 214.97970 * 21 19 17 36 36 H 1.09003 * 117.49866 * 359.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2842 2.7465 0.0006 5 1 3.1028 1.6965 -1.2125 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 1.5012 -2.1083 0.2771 9 6 3.4605 -1.2234 -0.3886 10 1 4.0158 -0.5121 0.2227 11 6 3.6052 -0.8512 -1.8695 12 6 5.0900 -0.9212 -2.2486 13 6 5.6050 -2.3384 -1.9822 14 7 4.5098 -3.1630 -1.4530 15 6 3.4179 -3.2767 -2.4298 16 6 2.8395 -1.8808 -2.7099 17 6 4.0204 -2.6325 -0.1736 18 1 3.2341 -3.2813 0.2122 19 6 5.1737 -2.5752 0.8301 20 6 5.1835 -3.6122 1.9550 21 6 4.8433 -2.1518 2.2627 22 1 -0.4850 -0.8394 0.0336 23 1 3.2190 0.1533 -2.0431 24 1 5.6528 -0.2087 -1.6454 25 1 5.2109 -0.6811 -3.3050 26 1 6.4157 -2.3000 -1.2548 27 1 5.9707 -2.7733 -2.9124 28 1 3.8017 -3.7038 -3.3563 29 1 2.6363 -3.9216 -2.0280 30 1 1.7843 -1.8626 -2.4374 31 1 2.9476 -1.6418 -3.7679 32 1 6.1362 -2.2653 0.4229 33 1 4.3680 -4.3349 1.9803 34 1 6.1523 -3.9842 2.2882 35 1 5.5885 -1.5636 2.7982 36 1 3.8042 -1.9135 2.4901 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260110847.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:41 Heat of formation + Delta-G solvation = 25.290729 kcal Electronic energy + Delta-G solvation = -16404.883778 eV Core-core repulsion = 14082.178789 eV Total energy + Delta-G solvation = -2322.704988 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.17615 -36.29516 -33.19120 -31.12432 -30.28746 -29.91533 -24.78620 -22.92953 -22.28493 -21.88165 -20.66099 -19.93234 -17.47038 -16.64552 -15.98141 -15.32884 -14.81740 -14.30771 -13.53006 -13.13055 -12.82586 -12.37743 -11.98447 -11.77427 -11.48541 -11.39695 -11.24161 -11.13811 -10.98806 -10.57109 -10.32193 -10.00649 -9.79286 -9.69629 -9.44427 -9.37142 -9.24959 -8.75409 -8.18586 -7.42622 -6.39393 -4.01869 3.37484 3.42843 3.60361 4.31335 4.50104 4.71501 5.16075 5.30655 5.38387 5.50356 5.59580 5.62719 5.77566 5.87422 5.90432 5.94884 6.08254 6.15150 6.20988 6.29609 6.34292 6.40694 6.44233 6.51019 6.60216 6.68033 6.74136 6.84906 7.19796 7.22211 7.27127 7.33439 7.75829 7.89899 8.23275 8.39045 8.92586 9.64077 10.96812 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.023892 B = 0.014583 C = 0.011813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.665381 B = 1919.580380 C = 2369.646068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.032 3.968 3 Si 1.042 2.958 4 H -0.289 1.289 5 H -0.276 1.276 6 H -0.284 1.284 7 C -0.584 4.584 8 H 0.053 0.947 9 C 0.005 3.995 10 H 0.026 0.974 11 C -0.096 4.096 12 C -0.153 4.153 13 C 0.054 3.946 14 N -0.530 5.530 15 C 0.064 3.936 16 C -0.132 4.132 17 C 0.127 3.873 18 H 0.077 0.923 19 C -0.134 4.134 20 C -0.183 4.183 21 C -0.175 4.175 22 H 0.266 0.734 23 H 0.072 0.928 24 H 0.053 0.947 25 H 0.049 0.951 26 H 0.069 0.931 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.039 0.961 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.226 -3.750 -1.965 11.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.173 4.173 3 Si 0.871 3.129 4 H -0.215 1.215 5 H -0.203 1.203 6 H -0.210 1.210 7 C -0.622 4.622 8 H 0.072 0.928 9 C -0.016 4.016 10 H 0.044 0.956 11 C -0.115 4.115 12 C -0.192 4.192 13 C -0.075 4.075 14 N -0.251 5.251 15 C -0.065 4.065 16 C -0.171 4.171 17 C 0.019 3.981 18 H 0.095 0.905 19 C -0.152 4.152 20 C -0.220 4.220 21 C -0.213 4.213 22 H 0.076 0.924 23 H 0.090 0.910 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.058 0.942 32 H 0.115 0.885 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 10.205 -2.617 -1.902 10.706 hybrid contribution -0.138 -0.738 -0.146 0.765 sum 10.067 -3.355 -2.048 10.808 Atomic orbital electron populations 1.70864 1.07046 1.30414 1.46016 1.25666 0.96091 1.02273 0.93275 0.84072 0.75398 0.76195 0.77209 1.21477 1.20260 1.21018 1.21961 0.94244 0.95743 1.50274 0.92847 1.19627 0.97693 0.93096 0.91136 0.95643 1.21680 0.91909 0.99144 0.98792 1.22330 0.98721 0.98077 1.00075 1.22127 0.94561 0.91615 0.99152 1.62571 1.09513 1.49067 1.03938 1.22103 0.93149 0.96614 0.94618 1.22105 1.02068 0.95556 0.97355 1.21366 0.93210 0.96598 0.86917 0.90510 1.22353 0.99838 1.03068 0.89956 1.22921 1.01919 0.92593 1.04578 1.22913 1.03006 0.96790 0.98571 0.92375 0.91009 0.92809 0.93216 0.91259 0.91999 0.92296 0.91507 0.90419 0.94239 0.88546 0.89276 0.89913 0.89741 0.87912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.46 13.70 55.43 0.76 -26.70 16 2 C 0.03 0.89 5.35 -17.82 -0.10 0.80 16 3 Si 1.04 25.26 26.39 -169.99 -4.49 20.77 16 4 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.28 -6.26 5.60 56.52 0.32 -5.94 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.58 -15.67 7.51 -34.44 -0.26 -15.93 16 8 H 0.05 1.56 7.53 -52.49 -0.40 1.17 16 9 C 0.00 0.11 1.23 -91.50 -0.11 0.00 16 10 H 0.03 0.61 6.03 -51.93 -0.31 0.29 16 11 C -0.10 -2.06 2.65 -90.02 -0.24 -2.30 16 12 C -0.15 -2.75 5.74 -26.46 -0.15 -2.90 16 13 C 0.05 0.90 5.81 -3.73 -0.02 0.88 16 14 N -0.53 -9.87 5.03 -225.97 -1.14 -11.00 16 15 C 0.06 1.17 6.12 -3.45 -0.02 1.15 16 16 C -0.13 -2.69 5.52 -26.18 -0.14 -2.83 16 17 C 0.13 2.58 2.25 -67.64 -0.15 2.43 16 18 H 0.08 1.73 7.08 -51.93 -0.37 1.36 16 19 C -0.13 -2.38 4.73 -90.62 -0.43 -2.81 16 20 C -0.18 -2.89 10.18 -26.69 -0.27 -3.16 16 21 C -0.18 -3.01 9.80 -26.69 -0.26 -3.27 16 22 H 0.27 8.03 8.72 -40.82 -0.36 7.67 16 23 H 0.07 1.68 4.93 -51.93 -0.26 1.42 16 24 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.07 1.09 5.91 -51.93 -0.31 0.78 16 27 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 30 H 0.08 1.81 7.23 -51.93 -0.38 1.43 16 31 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.10 1.62 5.98 -51.93 -0.31 1.31 16 33 H 0.09 1.43 8.08 -51.93 -0.42 1.01 16 34 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 36 H 0.10 1.99 8.14 -51.93 -0.42 1.57 16 LS Contribution 266.58 15.07 4.02 4.02 Total: -1.00 -28.23 266.58 -8.79 -37.01 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -5.79 Total: 3.84 kcal Atomic # 6 Polarization: -25.78 SS G_CDS: -2.16 Total: -27.94 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: -0.38 Total: -37.71 kcal Atomic # 14 Polarization: 25.26 SS G_CDS: -4.49 Total: 20.77 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -28.23 -8.79 -37.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260110847.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.306 kcal (2) G-P(sol) polarization free energy of solvation -28.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds