Wall clock time and date at job start Mon Mar 30 2020 03:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99993 * 2 1 4 4 H 1.48499 * 109.47233 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.47278 * 240.00302 * 3 2 1 6 6 H 1.48501 * 109.47289 * 120.00275 * 3 2 1 7 7 C 1.37877 * 120.00328 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99749 * 342.70362 * 7 2 1 9 9 C 1.50702 * 120.00392 * 162.69986 * 7 2 1 10 10 H 1.09002 * 109.57545 * 54.13033 * 9 7 2 11 11 C 1.53378 * 109.57792 * 293.86930 * 9 7 2 12 12 C 1.53398 * 108.59427 * 181.35725 * 11 9 7 13 13 C 1.53126 * 108.95351 * 58.79788 * 12 11 9 14 14 N 1.46951 * 109.35023 * 0.02562 * 13 12 11 15 15 C 1.46948 * 110.96578 * 62.08324 * 14 13 12 16 16 C 1.53385 * 108.60053 * 299.15082 * 11 9 7 17 17 C 1.46898 * 111.05748 * 298.03742 * 14 13 12 18 18 H 1.08997 * 109.48733 * 181.95524 * 17 14 13 19 19 C 1.52996 * 109.49394 * 302.02028 * 17 14 13 20 20 C 1.53000 * 117.50202 * 253.36643 * 19 17 14 21 21 C 1.52995 * 117.50458 * 184.70117 * 19 17 14 22 22 H 0.96998 * 120.00043 * 182.29457 * 1 2 3 23 23 H 1.09003 * 110.11955 * 60.58859 * 11 9 7 24 24 H 1.09006 * 109.46193 * 298.99254 * 12 11 9 25 25 H 1.09003 * 109.68689 * 178.74047 * 12 11 9 26 26 H 1.08995 * 109.49282 * 240.05579 * 13 12 11 27 27 H 1.08997 * 109.49353 * 119.97702 * 13 12 11 28 28 H 1.08998 * 109.49196 * 57.87654 * 15 14 13 29 29 H 1.09001 * 109.48508 * 177.94375 * 15 14 13 30 30 H 1.09001 * 109.57842 * 60.80309 * 16 11 9 31 31 H 1.08999 * 109.57901 * 181.06209 * 16 11 9 32 32 H 1.09004 * 115.54374 * 39.02727 * 19 17 14 33 33 H 1.08996 * 117.49694 * 359.97438 * 20 19 17 34 34 H 1.08998 * 117.49832 * 145.01250 * 20 19 17 35 35 H 1.09000 * 117.49911 * 214.97970 * 21 19 17 36 36 H 1.09003 * 117.49866 * 359.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2842 2.7465 0.0006 5 1 3.1028 1.6965 -1.2125 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 1.5012 -2.1083 0.2771 9 6 3.4605 -1.2234 -0.3886 10 1 4.0158 -0.5121 0.2227 11 6 3.6052 -0.8512 -1.8695 12 6 5.0900 -0.9212 -2.2486 13 6 5.6050 -2.3384 -1.9822 14 7 4.5098 -3.1630 -1.4530 15 6 3.4179 -3.2767 -2.4298 16 6 2.8395 -1.8808 -2.7099 17 6 4.0204 -2.6325 -0.1736 18 1 3.2341 -3.2813 0.2122 19 6 5.1737 -2.5752 0.8301 20 6 5.1835 -3.6122 1.9550 21 6 4.8433 -2.1518 2.2627 22 1 -0.4850 -0.8394 0.0336 23 1 3.2190 0.1533 -2.0431 24 1 5.6528 -0.2087 -1.6454 25 1 5.2109 -0.6811 -3.3050 26 1 6.4157 -2.3000 -1.2548 27 1 5.9707 -2.7733 -2.9124 28 1 3.8017 -3.7038 -3.3563 29 1 2.6363 -3.9216 -2.0280 30 1 1.7843 -1.8626 -2.4374 31 1 2.9476 -1.6418 -3.7679 32 1 6.1362 -2.2653 0.4229 33 1 4.3680 -4.3349 1.9803 34 1 6.1523 -3.9842 2.2882 35 1 5.5885 -1.5636 2.7982 36 1 3.8042 -1.9135 2.4901 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260110847.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:41 Heat of formation + Delta-G solvation = 7.324080 kcal Electronic energy + Delta-G solvation = -16405.662870 eV Core-core repulsion = 14082.178789 eV Total energy + Delta-G solvation = -2323.484081 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.74809 -37.67981 -35.24135 -32.83257 -31.78621 -31.63160 -26.69088 -24.44930 -23.78554 -23.29357 -22.39658 -21.48459 -19.54025 -18.19804 -17.45491 -16.98663 -16.41491 -15.69861 -15.43903 -14.88726 -14.45885 -13.84798 -13.64079 -13.47417 -13.15161 -12.92525 -12.85950 -12.84419 -12.33329 -12.24793 -12.05287 -11.77814 -11.43873 -11.26817 -11.02432 -10.90122 -10.84174 -10.64689 -10.33673 -9.05819 -8.59872 -6.28672 1.40146 1.47393 1.66198 2.46912 2.91307 3.08762 3.28069 3.79462 3.93295 4.11775 4.16452 4.20607 4.28862 4.39936 4.42048 4.49792 4.63885 4.67389 4.76005 4.81568 4.83998 4.97442 5.02165 5.05313 5.09559 5.22215 5.33207 5.35995 5.46676 5.54146 5.55394 5.63310 5.99376 6.10721 6.36055 6.40317 6.62506 7.45404 8.67794 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.023892 B = 0.014583 C = 0.011813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.665381 B = 1919.580380 C = 2369.646068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.020 4.020 3 Si 1.078 2.922 4 H -0.295 1.295 5 H -0.246 1.246 6 H -0.265 1.265 7 C -0.572 4.572 8 H 0.008 0.992 9 C 0.006 3.994 10 H 0.023 0.977 11 C -0.103 4.103 12 C -0.146 4.146 13 C 0.053 3.947 14 N -0.528 5.528 15 C 0.066 3.934 16 C -0.130 4.130 17 C 0.133 3.867 18 H 0.039 0.961 19 C -0.143 4.143 20 C -0.163 4.163 21 C -0.184 4.184 22 H 0.249 0.751 23 H 0.051 0.949 24 H 0.062 0.938 25 H 0.072 0.928 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.094 0.906 29 H 0.047 0.953 30 H 0.030 0.970 31 H 0.063 0.937 32 H 0.120 0.880 33 H 0.077 0.923 34 H 0.116 0.884 35 H 0.110 0.890 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.192 -3.672 -2.914 14.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.218 4.218 3 Si 0.901 3.099 4 H -0.222 1.222 5 H -0.171 1.171 6 H -0.191 1.191 7 C -0.610 4.610 8 H 0.027 0.973 9 C -0.014 4.014 10 H 0.041 0.959 11 C -0.123 4.123 12 C -0.185 4.185 13 C -0.074 4.074 14 N -0.248 5.248 15 C -0.063 4.063 16 C -0.169 4.169 17 C 0.024 3.976 18 H 0.057 0.943 19 C -0.161 4.161 20 C -0.200 4.200 21 C -0.221 4.221 22 H 0.058 0.942 23 H 0.069 0.931 24 H 0.081 0.919 25 H 0.090 0.910 26 H 0.105 0.895 27 H 0.108 0.892 28 H 0.112 0.888 29 H 0.066 0.934 30 H 0.049 0.951 31 H 0.082 0.918 32 H 0.138 0.862 33 H 0.096 0.904 34 H 0.135 0.865 35 H 0.129 0.871 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 14.193 -2.569 -2.856 14.704 hybrid contribution -1.452 -0.866 0.162 1.698 sum 12.741 -3.435 -2.694 13.468 Atomic orbital electron populations 1.70990 1.08370 1.29311 1.49552 1.26991 0.96006 1.05950 0.92808 0.83641 0.74924 0.72182 0.79193 1.22204 1.17121 1.19050 1.22106 0.96652 0.93699 1.48566 0.97319 1.19583 0.94468 0.94979 0.92389 0.95883 1.21611 0.95211 0.98079 0.97391 1.22283 0.95239 0.99365 1.01648 1.22310 0.93779 0.90401 1.00957 1.62578 1.09710 1.49378 1.03118 1.22123 0.93050 0.95090 0.95993 1.22056 0.99286 0.96922 0.98616 1.21097 0.93600 0.93979 0.88908 0.94318 1.22333 0.99424 1.04869 0.89480 1.22979 1.03118 0.91504 1.02403 1.22900 1.01800 0.98654 0.98764 0.94233 0.93109 0.91931 0.90971 0.89512 0.89154 0.88784 0.93430 0.95072 0.91796 0.86247 0.90400 0.86547 0.87136 0.91418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.30 13.70 21.45 0.29 -60.01 16 2 C -0.02 -1.18 5.35 84.66 0.45 -0.73 16 3 Si 1.08 51.18 26.39 68.60 1.81 52.99 16 4 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 5 H -0.25 -10.50 5.60 99.48 0.56 -9.94 16 6 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.57 -32.29 7.51 25.60 0.19 -32.10 16 8 H 0.01 0.54 7.53 -2.91 -0.02 0.52 16 9 C 0.01 0.28 1.23 -11.36 -0.01 0.27 16 10 H 0.02 1.07 6.03 -2.39 -0.01 1.06 16 11 C -0.10 -4.28 2.65 -10.40 -0.03 -4.31 16 12 C -0.15 -4.61 5.74 30.77 0.18 -4.43 16 13 C 0.05 1.51 5.81 86.34 0.50 2.01 16 14 N -0.53 -18.29 5.03 -868.84 -4.37 -22.66 16 15 C 0.07 2.34 6.12 86.52 0.53 2.87 16 16 C -0.13 -5.21 5.52 30.95 0.17 -5.04 16 17 C 0.13 5.33 2.25 44.96 0.10 5.43 16 18 H 0.04 1.82 7.08 -2.39 -0.02 1.81 16 19 C -0.14 -4.72 4.73 -10.80 -0.05 -4.77 16 20 C -0.16 -4.76 10.18 30.62 0.31 -4.44 16 21 C -0.18 -6.03 9.80 30.62 0.30 -5.73 16 22 H 0.25 16.19 8.72 -92.71 -0.81 15.38 16 23 H 0.05 2.30 4.93 -2.39 -0.01 2.29 16 24 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 25 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 26 H 0.09 2.21 5.91 -2.39 -0.01 2.19 16 27 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 29 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.03 1.50 7.23 -2.39 -0.02 1.49 16 31 H 0.06 2.22 8.14 -2.39 -0.02 2.21 16 32 H 0.12 3.44 5.98 -2.39 -0.01 3.43 16 33 H 0.08 2.44 8.08 -2.39 -0.02 2.42 16 34 H 0.12 2.66 8.14 -2.39 -0.02 2.64 16 35 H 0.11 3.03 8.14 -2.39 -0.02 3.01 16 36 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 Total: -1.00 -64.91 266.58 1.24 -63.67 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: 0.86 Total: 16.97 kcal Atomic # 6 Polarization: -53.61 SS G_CDS: 2.64 Total: -50.97 kcal Atomic # 7 Polarization: -78.59 SS G_CDS: -4.07 Total: -82.67 kcal Atomic # 14 Polarization: 51.18 SS G_CDS: 1.81 Total: 52.99 kcal Total: -64.91 1.24 -63.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260110847.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.996 kcal (2) G-P(sol) polarization free energy of solvation -64.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds