Wall clock time and date at job start Mon Mar 30 2020 02:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31860 * 1 3 3 N 1.39523 * 120.00331 * 2 1 4 4 N 1.40094 * 126.10305 * 359.96892 * 3 2 1 5 5 C 1.30866 * 108.25285 * 180.02562 * 4 3 2 6 6 C 1.39914 * 108.36309 * 359.74480 * 5 4 3 7 7 C 1.35330 * 107.97319 * 0.42348 * 6 5 4 8 8 C 1.50699 * 126.19503 * 179.84881 * 7 6 5 9 9 H 1.08993 * 109.47512 * 204.69204 * 8 7 6 10 10 C 1.52997 * 109.47078 * 84.68904 * 8 7 6 11 11 N 1.46894 * 109.47317 * 64.99938 * 10 8 7 12 12 C 1.53006 * 109.46866 * 324.69081 * 8 7 6 13 13 C 1.50699 * 109.46610 * 185.00088 * 12 8 7 14 14 H 1.07998 * 120.00857 * 359.97438 * 13 12 8 15 15 C 1.37886 * 119.99708 * 180.02562 * 13 12 8 16 16 N 1.31512 * 119.99820 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 119.99904 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47559 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47115 * 120.00007 * 17 15 13 20 20 H 1.48506 * 109.47085 * 239.99914 * 17 15 13 21 21 H 1.07991 * 120.00614 * 179.97438 * 1 2 3 22 22 H 1.08004 * 119.99579 * 0.02562 * 1 2 3 23 23 H 1.08005 * 119.99285 * 179.97438 * 2 1 3 24 24 H 1.07996 * 125.81648 * 180.02562 * 5 4 3 25 25 H 1.08009 * 126.01456 * 180.29378 * 6 5 4 26 26 H 1.09002 * 109.47196 * 185.00009 * 10 8 7 27 27 H 1.09001 * 109.47630 * 305.00104 * 10 8 7 28 28 H 1.00897 * 111.00659 * 179.97438 * 11 10 8 29 29 H 1.00902 * 111.00258 * 303.96014 * 11 10 8 30 30 H 1.08992 * 109.47046 * 304.99824 * 12 8 7 31 31 H 1.08997 * 109.47395 * 65.00364 * 12 8 7 32 32 H 0.97002 * 119.99655 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3186 0.0000 0.0000 3 7 2.0163 1.2083 0.0000 4 7 1.4488 2.4891 -0.0006 5 6 2.4191 3.3673 -0.0010 6 6 3.6370 2.6785 0.0053 7 6 3.3668 1.3525 0.0000 8 6 4.3808 0.2377 0.0006 9 1 3.9365 -0.6580 -0.4334 10 6 4.8169 -0.0543 1.4377 11 7 3.6727 -0.5694 2.2015 12 6 5.5982 0.6552 -0.8269 13 6 6.5573 -0.5027 -0.9288 14 1 6.3224 -1.4423 -0.4508 15 6 7.7354 -0.3623 -1.6313 16 7 8.0218 0.7819 -2.2129 17 14 8.9246 -1.7973 -1.7570 18 1 8.3734 -2.9630 -1.0205 19 1 9.1154 -2.1585 -3.1848 20 1 10.2307 -1.4111 -1.1653 21 1 -0.5401 -0.9352 -0.0004 22 1 -0.5399 0.9354 -0.0004 23 1 1.8585 -0.9354 0.0004 24 1 2.3001 4.4407 -0.0011 25 1 4.6198 3.1264 0.0111 26 1 5.6139 -0.7979 1.4316 27 1 5.1795 0.8632 1.9011 28 1 3.9352 -0.7705 3.1548 29 1 2.8963 0.0743 2.1681 30 1 5.2753 0.9485 -1.8257 31 1 6.0947 1.4967 -0.3438 32 1 8.8504 0.8806 -2.7075 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260132044.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:08 Heat of formation + Delta-G solvation = 86.097373 kcal Electronic energy + Delta-G solvation = -14944.303358 eV Core-core repulsion = 12520.694800 eV Total energy + Delta-G solvation = -2423.608558 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.08754 -36.05642 -34.52376 -32.92213 -31.36019 -29.55119 -28.46220 -25.60555 -23.02807 -22.65318 -21.68387 -19.47444 -18.42189 -16.99719 -15.95804 -15.77370 -14.73182 -14.40151 -14.31579 -14.17509 -13.95835 -12.92564 -12.50882 -12.32610 -12.25744 -11.89828 -11.27669 -11.04596 -10.79864 -10.67818 -10.66469 -10.31335 -10.14856 -9.62658 -9.13417 -8.53696 -8.42568 -8.32233 -7.89901 -6.06946 -4.09944 1.56277 2.85653 3.02904 3.20678 3.27561 3.35868 3.39348 4.40257 4.86066 4.98432 5.13045 5.29978 5.31928 5.62866 5.78478 5.85035 5.97324 6.04428 6.29983 6.36381 6.50521 6.64085 6.70721 6.82586 7.05798 7.41023 7.55832 7.61889 7.62658 7.73525 7.91142 8.04718 8.29533 8.95827 9.54510 11.04145 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.035052 B = 0.007639 C = 0.007052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.623084 B = 3664.467680 C = 3969.828154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.092 3.908 3 N -0.332 5.332 4 N -0.312 5.312 5 C 0.052 3.948 6 C -0.266 4.266 7 C 0.109 3.891 8 C -0.023 4.023 9 H 0.078 0.922 10 C 0.077 3.923 11 N -0.856 5.856 12 C 0.038 3.962 13 C -0.522 4.522 14 H 0.060 0.940 15 C 0.059 3.941 16 N -0.892 5.892 17 Si 0.891 3.109 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.284 1.284 21 H 0.118 0.882 22 H 0.109 0.891 23 H 0.160 0.840 24 H 0.181 0.819 25 H 0.152 0.848 26 H 0.095 0.905 27 H 0.025 0.975 28 H 0.335 0.665 29 H 0.329 0.671 30 H 0.022 0.978 31 H 0.024 0.976 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.363 0.480 6.255 11.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C -0.018 4.018 3 N -0.110 5.110 4 N -0.131 5.131 5 C -0.135 4.135 6 C -0.294 4.294 7 C -0.014 4.014 8 C -0.044 4.044 9 H 0.096 0.904 10 C -0.053 4.053 11 N -0.384 5.384 12 C 0.000 4.000 13 C -0.560 4.560 14 H 0.078 0.922 15 C -0.142 4.142 16 N -0.530 5.530 17 Si 0.719 3.281 18 H -0.196 1.196 19 H -0.210 1.210 20 H -0.210 1.210 21 H 0.136 0.864 22 H 0.127 0.873 23 H 0.177 0.823 24 H 0.198 0.802 25 H 0.169 0.831 26 H 0.113 0.887 27 H 0.044 0.956 28 H 0.146 0.854 29 H 0.141 0.859 30 H 0.041 0.959 31 H 0.043 0.957 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.505 -0.278 5.622 11.918 hybrid contribution 1.718 0.359 0.353 1.791 sum -8.787 0.081 5.975 10.626 Atomic orbital electron populations 1.23853 0.94446 1.03171 1.05107 1.21343 0.93687 0.85897 1.00899 1.46198 1.04204 1.04484 1.56126 1.77264 1.22539 0.87320 1.26015 1.23899 0.90883 0.99540 0.99150 1.21409 0.99599 0.92044 1.16312 1.22001 0.83918 0.97743 0.97759 1.20238 0.94264 0.93052 0.96809 0.90391 1.21865 0.92625 0.98849 0.92007 1.58930 1.10037 1.51542 1.17922 1.19100 0.89424 0.97182 0.94319 1.21218 1.03443 0.98250 1.33113 0.92173 1.24999 0.98088 0.95728 0.95420 1.69972 1.24681 1.24075 1.34318 0.86546 0.81002 0.82691 0.77846 1.19644 1.21013 1.21014 0.86377 0.87299 0.82297 0.80170 0.83076 0.88678 0.95649 0.85351 0.85901 0.95916 0.95740 0.92945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -2.92 14.35 28.83 0.41 -2.51 16 2 C 0.09 1.39 9.63 -15.95 -0.15 1.23 16 3 N -0.33 -5.82 3.56 -9.00 -0.03 -5.85 16 4 N -0.31 -5.48 11.73 30.64 0.36 -5.12 16 5 C 0.05 0.83 12.02 -17.34 -0.21 0.63 16 6 C -0.27 -4.79 10.00 -39.99 -0.40 -5.19 16 7 C 0.11 2.03 5.00 -81.86 -0.41 1.62 16 8 C -0.02 -0.45 2.18 -91.77 -0.20 -0.65 16 9 H 0.08 1.58 7.18 -51.93 -0.37 1.21 16 10 C 0.08 1.38 6.12 -3.83 -0.02 1.36 16 11 N -0.86 -12.85 9.62 -10.37 -0.10 -12.95 16 12 C 0.04 0.92 3.94 -27.88 -0.11 0.81 16 13 C -0.52 -13.83 8.34 -34.44 -0.29 -14.12 16 14 H 0.06 1.55 7.08 -52.49 -0.37 1.18 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.89 -25.83 13.29 55.43 0.74 -25.09 16 17 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 18 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 22 H 0.11 1.52 7.54 -52.48 -0.40 1.13 16 23 H 0.16 2.26 7.21 -52.48 -0.38 1.88 16 24 H 0.18 2.18 8.06 -52.49 -0.42 1.76 16 25 H 0.15 2.69 7.53 -52.48 -0.40 2.30 16 26 H 0.10 1.83 6.82 -51.93 -0.35 1.48 16 27 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.33 4.29 9.08 -39.29 -0.36 3.94 16 29 H 0.33 4.99 7.01 -39.29 -0.28 4.71 16 30 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.02 0.62 7.55 -51.93 -0.39 0.23 16 32 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 273.77 15.07 4.13 4.13 Total: -1.00 -29.48 273.77 -5.52 -35.00 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -4.12 Total: 9.27 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: -1.47 Total: -15.29 kcal Atomic # 7 Polarization: -49.97 SS G_CDS: 0.96 Total: -49.01 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -29.48 -5.52 -35.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260132044.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.098 kcal (2) G-P(sol) polarization free energy of solvation -29.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds