Wall clock time and date at job start Mon Mar 30 2020 02:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36440 * 126.58787 * 2 1 4 4 N 1.38146 * 125.77443 * 0.02562 * 3 2 1 5 5 C 1.36922 * 119.99705 * 179.97438 * 4 3 2 6 6 H 1.08002 * 120.00642 * 359.97438 * 5 4 3 7 7 C 1.38731 * 119.99771 * 179.71898 * 5 4 3 8 8 N 1.31614 * 119.99593 * 0.27496 * 7 5 4 9 9 Si 1.86794 * 120.00007 * 180.27671 * 7 5 4 10 10 H 1.48498 * 109.47176 * 90.00191 * 9 7 5 11 11 H 1.48501 * 109.46931 * 210.00064 * 9 7 5 12 12 H 1.48494 * 109.47332 * 329.99581 * 9 7 5 13 13 N 1.31586 * 108.45375 * 180.26435 * 3 2 1 14 14 C 1.33594 * 109.22134 * 359.55161 * 13 3 2 15 15 C 1.35086 * 108.24611 * 0.47969 * 14 13 3 16 16 C 1.50681 * 124.46040 * 179.60026 * 15 14 13 17 17 C 1.53391 * 108.39127 * 343.59102 * 16 15 14 18 18 C 1.53117 * 109.43265 * 49.65252 * 17 16 15 19 19 C 1.50914 * 127.82055 * 180.22566 * 14 13 3 20 20 H 1.08998 * 109.47364 * 89.97745 * 1 2 3 21 21 H 1.09006 * 109.46727 * 209.97410 * 1 2 3 22 22 H 1.08992 * 109.47390 * 329.97069 * 1 2 3 23 23 H 0.96990 * 119.99663 * 359.97438 * 4 3 2 24 24 H 0.97005 * 119.99715 * 179.97438 * 8 7 5 25 25 H 1.09001 * 109.68084 * 103.31522 * 16 15 14 26 26 H 1.09003 * 109.67478 * 223.86432 * 16 15 14 27 27 H 1.09004 * 109.47463 * 169.64122 * 17 16 15 28 28 H 1.08999 * 109.47768 * 289.65912 * 17 16 15 29 29 H 1.09001 * 109.45668 * 49.96466 * 18 17 16 30 30 H 1.08999 * 109.46078 * 169.92528 * 18 17 16 31 31 H 1.09000 * 109.67091 * 43.86496 * 19 14 13 32 32 H 1.09002 * 109.70281 * 283.34939 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2782 1.0955 0.0000 4 7 1.8597 2.4121 0.0005 5 6 2.7823 3.4237 0.0010 6 1 3.8373 3.1926 0.0014 7 6 2.3620 4.7458 -0.0044 8 7 1.0763 5.0275 -0.0045 9 14 3.6207 6.1260 -0.0116 10 1 3.9529 6.4857 -1.4135 11 1 3.0589 7.3118 0.6838 12 1 4.8507 5.6779 0.6893 13 7 3.5287 0.6860 -0.0058 14 6 3.5541 -0.6497 0.0003 15 6 2.2794 -1.0970 -0.0005 16 6 1.8863 -2.5516 -0.0034 17 6 3.1079 -3.3822 -0.4164 18 6 4.3184 -2.9587 0.4201 19 6 4.7636 -1.5523 0.0018 20 1 -0.3634 0.0004 -1.0276 21 1 -0.3633 -0.8903 0.5135 22 1 -0.3634 0.8896 0.5142 23 1 0.9122 2.6196 0.0005 24 1 0.7824 5.9520 -0.0079 25 1 1.5624 -2.8463 0.9947 26 1 1.0761 -2.7113 -0.7149 27 1 2.9020 -4.4394 -0.2486 28 1 3.3200 -3.2164 -1.4726 29 1 4.0467 -2.9548 1.4757 30 1 5.1356 -3.6616 0.2582 31 1 5.5018 -1.1754 0.7097 32 1 5.1976 -1.5868 -0.9974 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260203628.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:40 Heat of formation + Delta-G solvation = 53.102525 kcal Electronic energy + Delta-G solvation = -14995.740134 eV Core-core repulsion = 12570.700812 eV Total energy + Delta-G solvation = -2425.039322 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.03040 -36.45275 -34.60294 -33.24668 -31.25682 -29.79231 -27.34482 -26.18846 -24.57129 -22.04526 -21.45172 -19.42982 -18.63407 -17.01814 -16.33145 -15.29347 -15.05282 -14.38498 -14.06425 -13.49373 -13.45824 -13.03844 -12.63483 -12.46114 -12.21051 -11.98973 -11.68805 -11.34472 -11.01917 -10.58346 -10.50583 -10.43491 -10.28212 -10.13214 -9.92550 -8.53583 -8.52046 -8.27923 -6.39513 -6.26507 -3.53770 3.03321 3.32751 3.33409 3.37901 3.57334 4.29709 4.32526 4.95210 5.12755 5.15833 5.22719 5.32576 5.35365 5.63200 5.69126 5.76380 5.82888 5.88935 5.93458 6.04599 6.13126 6.26248 6.28754 6.41113 6.61670 6.83960 7.40252 7.52141 7.76178 7.89422 8.37133 8.91641 9.24739 9.58432 9.95330 10.93429 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.044634 B = 0.007466 C = 0.006475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.178641 B = 3749.647436 C = 4323.190329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.502 5.502 3 C 0.483 3.517 4 N -0.560 5.560 5 C -0.264 4.264 6 H 0.105 0.895 7 C 0.007 3.993 8 N -0.919 5.919 9 Si 0.933 3.067 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.271 1.271 13 N -0.556 5.556 14 C 0.038 3.962 15 C -0.109 4.109 16 C -0.021 4.021 17 C -0.109 4.109 18 C -0.114 4.114 19 C -0.029 4.029 20 H 0.059 0.941 21 H 0.072 0.928 22 H 0.075 0.925 23 H 0.401 0.599 24 H 0.267 0.733 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.094 -13.241 0.086 13.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.199 5.199 3 C 0.132 3.868 4 N -0.188 5.188 5 C -0.394 4.394 6 H 0.123 0.877 7 C -0.192 4.192 8 N -0.562 5.562 9 Si 0.761 3.239 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.196 1.196 13 N -0.287 5.287 14 C -0.092 4.092 15 C -0.221 4.221 16 C -0.059 4.059 17 C -0.147 4.147 18 C -0.152 4.152 19 C -0.068 4.068 20 H 0.078 0.922 21 H 0.090 0.910 22 H 0.093 0.907 23 H 0.237 0.763 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.499 -12.431 0.086 12.442 hybrid contribution -0.905 0.517 -0.025 1.042 sum -0.406 -11.914 0.061 11.921 Atomic orbital electron populations 1.21636 0.78865 1.03123 1.01990 1.44464 1.05380 1.05429 1.64591 1.19848 0.84632 0.82608 0.99707 1.39477 1.08706 0.97261 1.73358 1.19599 0.90240 0.83818 1.45766 0.87742 1.25115 0.96889 0.98088 0.99143 1.69679 1.13363 1.19900 1.53281 0.85796 0.80001 0.79984 0.78159 1.20725 1.21209 1.19573 1.70214 1.15849 1.09736 1.32892 1.20061 0.92572 0.90753 1.05826 1.19938 0.90672 0.88320 1.23172 1.19721 0.97312 0.88783 1.00113 1.21490 0.94859 0.98106 1.00276 1.21545 0.97343 0.96269 0.99996 1.19819 0.94049 0.91712 1.01196 0.92247 0.90956 0.90661 0.76324 0.92288 0.92457 0.92621 0.92086 0.91823 0.91982 0.92014 0.91239 0.91565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.40 10.88 59.85 0.65 2.05 16 2 N -0.50 -10.43 3.19 -120.29 -0.38 -10.81 16 3 C 0.48 12.08 8.45 -319.06 -2.70 9.39 16 4 N -0.56 -14.87 5.41 -12.21 -0.07 -14.93 16 5 C -0.26 -7.48 9.80 -15.10 -0.15 -7.63 16 6 H 0.10 3.05 7.37 -52.49 -0.39 2.66 16 7 C 0.01 0.20 5.50 -17.46 -0.10 0.10 16 8 N -0.92 -25.95 13.05 55.49 0.72 -25.22 16 9 Si 0.93 21.76 29.55 -169.99 -5.02 16.74 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 12 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 13 N -0.56 -14.18 10.55 -9.99 -0.11 -14.28 16 14 C 0.04 0.81 6.97 -82.84 -0.58 0.23 16 15 C -0.11 -2.13 6.75 -81.59 -0.55 -2.68 16 16 C -0.02 -0.30 5.98 -27.69 -0.17 -0.46 16 17 C -0.11 -1.35 5.91 -26.47 -0.16 -1.50 16 18 C -0.11 -1.46 5.89 -26.50 -0.16 -1.61 16 19 C -0.03 -0.49 6.30 -27.60 -0.17 -0.66 16 20 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 21 H 0.07 0.95 8.00 -51.93 -0.42 0.53 16 22 H 0.07 1.20 7.53 -51.93 -0.39 0.81 16 23 H 0.40 10.37 7.17 -40.82 -0.29 10.08 16 24 H 0.27 7.18 8.31 -40.82 -0.34 6.85 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.81 8.12 -51.93 -0.42 0.39 16 29 H 0.06 0.81 8.11 -51.93 -0.42 0.39 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 267.10 15.07 4.03 4.03 Total: -1.00 -31.53 267.10 -9.32 -40.85 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -4.42 Total: 6.41 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: -4.07 Total: -2.77 kcal Atomic # 7 Polarization: -65.42 SS G_CDS: 0.17 Total: -65.25 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -31.53 -9.32 -40.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260203628.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.952 kcal (2) G-P(sol) polarization free energy of solvation -31.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds