Wall clock time and date at job start Mon Mar 30 2020 02:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36440 * 126.58787 * 2 1 4 4 N 1.38146 * 125.77443 * 0.02562 * 3 2 1 5 5 C 1.36922 * 119.99705 * 179.97438 * 4 3 2 6 6 H 1.08002 * 120.00642 * 359.97438 * 5 4 3 7 7 C 1.38731 * 119.99771 * 179.71898 * 5 4 3 8 8 N 1.31614 * 119.99593 * 0.27496 * 7 5 4 9 9 Si 1.86794 * 120.00007 * 180.27671 * 7 5 4 10 10 H 1.48498 * 109.47176 * 90.00191 * 9 7 5 11 11 H 1.48501 * 109.46931 * 210.00064 * 9 7 5 12 12 H 1.48494 * 109.47332 * 329.99581 * 9 7 5 13 13 N 1.31586 * 108.45375 * 180.26435 * 3 2 1 14 14 C 1.33594 * 109.22134 * 359.55161 * 13 3 2 15 15 C 1.35086 * 108.24611 * 0.47969 * 14 13 3 16 16 C 1.50681 * 124.46040 * 179.60026 * 15 14 13 17 17 C 1.53391 * 108.39127 * 343.59102 * 16 15 14 18 18 C 1.53117 * 109.43265 * 49.65252 * 17 16 15 19 19 C 1.50914 * 127.82055 * 180.22566 * 14 13 3 20 20 H 1.08998 * 109.47364 * 89.97745 * 1 2 3 21 21 H 1.09006 * 109.46727 * 209.97410 * 1 2 3 22 22 H 1.08992 * 109.47390 * 329.97069 * 1 2 3 23 23 H 0.96990 * 119.99663 * 359.97438 * 4 3 2 24 24 H 0.97005 * 119.99715 * 179.97438 * 8 7 5 25 25 H 1.09001 * 109.68084 * 103.31522 * 16 15 14 26 26 H 1.09003 * 109.67478 * 223.86432 * 16 15 14 27 27 H 1.09004 * 109.47463 * 169.64122 * 17 16 15 28 28 H 1.08999 * 109.47768 * 289.65912 * 17 16 15 29 29 H 1.09001 * 109.45668 * 49.96466 * 18 17 16 30 30 H 1.08999 * 109.46078 * 169.92528 * 18 17 16 31 31 H 1.09000 * 109.67091 * 43.86496 * 19 14 13 32 32 H 1.09002 * 109.70281 * 283.34939 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2782 1.0955 0.0000 4 7 1.8597 2.4121 0.0005 5 6 2.7823 3.4237 0.0010 6 1 3.8373 3.1926 0.0014 7 6 2.3620 4.7458 -0.0044 8 7 1.0763 5.0275 -0.0045 9 14 3.6207 6.1260 -0.0116 10 1 3.9529 6.4857 -1.4135 11 1 3.0589 7.3118 0.6838 12 1 4.8507 5.6779 0.6893 13 7 3.5287 0.6860 -0.0058 14 6 3.5541 -0.6497 0.0003 15 6 2.2794 -1.0970 -0.0005 16 6 1.8863 -2.5516 -0.0034 17 6 3.1079 -3.3822 -0.4164 18 6 4.3184 -2.9587 0.4201 19 6 4.7636 -1.5523 0.0018 20 1 -0.3634 0.0004 -1.0276 21 1 -0.3633 -0.8903 0.5135 22 1 -0.3634 0.8896 0.5142 23 1 0.9122 2.6196 0.0005 24 1 0.7824 5.9520 -0.0079 25 1 1.5624 -2.8463 0.9947 26 1 1.0761 -2.7113 -0.7149 27 1 2.9020 -4.4394 -0.2486 28 1 3.3200 -3.2164 -1.4726 29 1 4.0467 -2.9548 1.4757 30 1 5.1356 -3.6616 0.2582 31 1 5.5018 -1.1754 0.7097 32 1 5.1976 -1.5868 -0.9974 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260203628.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:40 Heat of formation + Delta-G solvation = 35.416854 kcal Electronic energy + Delta-G solvation = -14996.507042 eV Core-core repulsion = 12570.700812 eV Total energy + Delta-G solvation = -2425.806230 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.69112 -37.84077 -36.37750 -34.81931 -33.24256 -31.03163 -28.87415 -27.66226 -26.49302 -23.47582 -22.71771 -21.15399 -20.25197 -18.79753 -18.05647 -16.78391 -16.69138 -16.06646 -15.61345 -15.21354 -14.64404 -14.24437 -14.07842 -13.87218 -13.62151 -13.36158 -13.23477 -13.14636 -12.72193 -12.35470 -12.07108 -11.71442 -11.64238 -11.55951 -11.53415 -10.35470 -10.26204 -10.08789 -8.33515 -8.15839 -5.64088 1.33812 1.42164 1.54790 1.57150 1.94286 2.43637 2.50049 3.26884 3.29534 3.89431 3.96630 4.13807 4.16218 4.37778 4.42060 4.48292 4.58335 4.76222 4.78504 4.86671 4.98739 5.14445 5.21644 5.28797 5.38494 5.44412 5.57193 5.79954 5.83073 6.26551 6.56380 6.92237 7.34015 7.62290 8.04981 8.87164 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.044634 B = 0.007466 C = 0.006475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.178641 B = 3749.647436 C = 4323.190329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.498 5.498 3 C 0.451 3.549 4 N -0.581 5.581 5 C -0.282 4.282 6 H 0.085 0.915 7 C -0.037 4.037 8 N -0.946 5.946 9 Si 0.996 3.004 10 H -0.275 1.275 11 H -0.277 1.277 12 H -0.272 1.272 13 N -0.596 5.596 14 C -0.009 4.009 15 C -0.086 4.086 16 C -0.022 4.022 17 C -0.106 4.106 18 C -0.106 4.106 19 C -0.030 4.030 20 H 0.075 0.925 21 H 0.109 0.891 22 H 0.069 0.931 23 H 0.399 0.601 24 H 0.270 0.730 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.099 0.901 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.093 0.907 31 H 0.060 0.940 32 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.378 -15.760 0.087 15.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.193 5.193 3 C 0.099 3.901 4 N -0.211 5.211 5 C -0.412 4.412 6 H 0.102 0.898 7 C -0.233 4.233 8 N -0.591 5.591 9 Si 0.821 3.179 10 H -0.201 1.201 11 H -0.202 1.202 12 H -0.196 1.196 13 N -0.328 5.328 14 C -0.137 4.137 15 C -0.199 4.199 16 C -0.061 4.061 17 C -0.144 4.144 18 C -0.144 4.144 19 C -0.068 4.068 20 H 0.093 0.907 21 H 0.128 0.872 22 H 0.088 0.912 23 H 0.234 0.766 24 H 0.079 0.921 25 H 0.095 0.905 26 H 0.094 0.906 27 H 0.118 0.882 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.111 0.889 31 H 0.078 0.922 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.206 -15.019 0.085 15.020 hybrid contribution -0.836 1.075 -0.028 1.362 sum -0.630 -13.944 0.057 13.958 Atomic orbital electron populations 1.21973 0.76019 1.04725 1.03530 1.44835 1.07262 1.04658 1.62595 1.19983 0.85628 0.83089 1.01425 1.39275 1.08083 0.97736 1.76017 1.19570 0.89837 0.85082 1.46748 0.89755 1.25900 0.98833 0.99764 0.98849 1.69770 1.14656 1.20338 1.54288 0.84851 0.77613 0.77158 0.78288 1.20107 1.20191 1.19632 1.70101 1.17138 1.12621 1.32931 1.20912 0.95408 0.89764 1.07619 1.20990 0.90041 0.90356 1.18490 1.20015 0.99104 0.84980 1.01966 1.21531 0.93312 0.99781 0.99753 1.21540 0.98843 0.94120 0.99918 1.19973 0.92312 0.93229 1.01282 0.90672 0.87212 0.91225 0.76626 0.92142 0.90455 0.90622 0.88241 0.92253 0.92061 0.88896 0.92160 0.91341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.40 10.88 127.77 1.39 3.79 16 2 N -0.50 -20.40 3.19 -534.49 -1.70 -22.11 16 3 C 0.45 23.20 8.45 260.18 2.20 25.40 16 4 N -0.58 -32.18 5.41 -192.54 -1.04 -33.22 16 5 C -0.28 -16.71 9.80 84.02 0.82 -15.88 16 6 H 0.08 5.20 7.37 -2.91 -0.02 5.18 16 7 C -0.04 -2.10 5.50 84.84 0.47 -1.64 16 8 N -0.95 -54.68 13.05 21.64 0.28 -54.40 16 9 Si 1.00 45.64 29.55 68.60 2.03 47.66 16 10 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 11 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 12 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 13 N -0.60 -31.45 10.55 -185.50 -1.96 -33.41 16 14 C -0.01 -0.38 6.97 41.63 0.29 -0.09 16 15 C -0.09 -3.21 6.75 41.08 0.28 -2.93 16 16 C -0.02 -0.55 5.98 29.97 0.18 -0.37 16 17 C -0.11 -2.12 5.91 30.76 0.18 -1.94 16 18 C -0.11 -2.36 5.89 30.75 0.18 -2.18 16 19 C -0.03 -0.95 6.30 30.03 0.19 -0.76 16 20 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 21 H 0.11 2.47 8.00 -2.38 -0.02 2.45 16 22 H 0.07 2.19 7.53 -2.39 -0.02 2.18 16 23 H 0.40 21.57 7.17 -92.72 -0.66 20.90 16 24 H 0.27 14.70 8.31 -92.70 -0.77 13.93 16 25 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 28 H 0.06 1.27 8.12 -2.39 -0.02 1.25 16 29 H 0.06 1.39 8.11 -2.39 -0.02 1.37 16 30 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.07 2.10 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -71.46 267.10 4.24 -67.23 By element: Atomic # 1 Polarization: 24.39 SS G_CDS: 0.45 Total: 24.84 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: 6.18 Total: 3.41 kcal Atomic # 7 Polarization: -138.72 SS G_CDS: -4.42 Total: -143.14 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.66 kcal Total: -71.46 4.24 -67.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260203628.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.642 kcal (2) G-P(sol) polarization free energy of solvation -71.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds