Wall clock time and date at job start Mon Mar 30 2020 02:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.40084 * 126.04111 * 2 1 4 4 C 1.30834 * 108.20685 * 180.23100 * 3 2 1 5 5 C 1.39873 * 108.20179 * 359.78023 * 4 3 2 6 6 C 1.34946 * 126.03362 * 179.84164 * 2 1 3 7 7 C 1.50701 * 126.13023 * 0.03640 * 6 2 1 8 8 H 1.09004 * 110.36603 * 297.83652 * 7 6 2 9 9 N 1.48556 * 110.41286 * 175.35785 * 7 6 2 10 10 C 1.48564 * 104.22192 * 201.73953 * 9 7 6 11 11 C 1.54381 * 104.59509 * 39.48287 * 10 9 7 12 12 C 1.54257 * 105.05747 * 336.14718 * 11 10 9 13 13 H 1.09000 * 110.40997 * 241.05737 * 12 11 10 14 14 C 1.50699 * 110.32134 * 118.89747 * 12 11 10 15 15 H 1.08000 * 120.00307 * 277.74218 * 14 12 11 16 16 C 1.37886 * 119.99940 * 97.74648 * 14 12 11 17 17 N 1.31512 * 119.99535 * 184.00617 * 16 14 12 18 18 Si 1.86798 * 119.99863 * 4.00285 * 16 14 12 19 19 H 1.48492 * 109.46990 * 84.72204 * 18 16 14 20 20 H 1.48500 * 109.46743 * 204.72054 * 18 16 14 21 21 H 1.48495 * 109.47445 * 324.71794 * 18 16 14 22 22 H 1.08995 * 109.47036 * 274.65362 * 1 2 3 23 23 H 1.08995 * 109.46939 * 34.65190 * 1 2 3 24 24 H 1.09002 * 109.47363 * 154.64977 * 1 2 3 25 25 H 1.08001 * 125.89805 * 179.80981 * 4 3 2 26 26 H 1.08005 * 126.04025 * 180.02562 * 5 4 3 27 27 H 1.00899 * 111.00418 * 321.28998 * 9 7 6 28 28 H 1.08998 * 110.41180 * 158.26396 * 10 9 7 29 29 H 1.09004 * 110.41224 * 280.70275 * 10 9 7 30 30 H 1.09000 * 110.32285 * 217.25537 * 11 10 9 31 31 H 1.08996 * 110.32269 * 95.04558 * 11 10 9 32 32 H 0.97005 * 119.99768 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1327 0.0000 4 6 3.5347 0.7320 -0.0050 5 6 3.5437 -0.6667 -0.0033 6 6 2.2589 -1.0913 0.0030 7 6 1.7973 -2.5258 0.0062 8 1 1.2264 -2.7386 0.9101 9 7 2.9596 -3.4444 -0.1037 10 6 2.3777 -4.7090 -0.6225 11 6 1.3300 -4.2572 -1.6625 12 6 0.9482 -2.8210 -1.2489 13 1 -0.1137 -2.7640 -1.0096 14 6 1.2883 -1.8511 -2.3509 15 1 2.2974 -1.4795 -2.4509 16 6 0.3111 -1.4379 -3.2316 17 7 0.6238 -0.6539 -4.2401 18 14 -1.4567 -1.9919 -2.9922 19 1 -2.1332 -1.0861 -2.0295 20 1 -2.1688 -1.9510 -4.2947 21 1 -1.4733 -3.3790 -2.4624 22 1 -0.3633 0.0834 1.0242 23 1 -0.3633 0.8453 -0.5843 24 1 -0.3634 -0.9287 -0.4400 25 1 4.4055 1.3709 -0.0092 26 1 4.4211 -1.2965 -0.0060 27 1 3.6518 -3.0774 -0.7395 28 1 3.1487 -5.3152 -1.0982 29 1 1.8984 -5.2655 0.1829 30 1 0.4556 -4.9069 -1.6258 31 1 1.7635 -4.2606 -2.6626 32 1 -0.0636 -0.3635 -4.8599 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260232628.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:34 Heat of formation + Delta-G solvation = 84.658161 kcal Electronic energy + Delta-G solvation = -15831.705271 eV Core-core repulsion = 13408.034304 eV Total energy + Delta-G solvation = -2423.670967 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.53041 -37.78744 -32.94950 -32.25278 -30.48894 -29.54413 -27.00089 -25.99759 -24.43020 -21.54168 -20.30850 -19.55424 -18.67675 -17.41485 -16.19158 -14.81016 -14.51270 -14.44521 -14.19224 -13.52423 -13.11787 -12.91809 -12.64203 -12.08935 -11.95739 -11.83182 -11.67516 -11.10712 -10.96971 -10.77173 -10.26797 -10.06361 -9.82687 -9.79037 -9.13505 -8.68753 -8.38144 -8.06801 -7.58483 -6.18227 -4.17008 2.79691 3.08383 3.21340 3.23146 3.38560 3.69358 4.25798 4.83608 5.09361 5.32805 5.40441 5.55517 5.75444 5.85277 5.88252 5.96521 6.09110 6.17224 6.25107 6.37005 6.47246 6.51214 6.65146 6.83765 6.92780 7.04105 7.34428 7.49810 7.60696 7.87395 7.90499 8.39031 8.58769 8.89200 9.41909 10.94682 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.022297 B = 0.016275 C = 0.011549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.471864 B = 1720.012745 C = 2423.898016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.346 5.346 3 N -0.313 5.313 4 C 0.039 3.961 5 C -0.291 4.291 6 C 0.152 3.848 7 C 0.130 3.870 8 H 0.080 0.920 9 N -0.656 5.656 10 C 0.040 3.960 11 C -0.154 4.154 12 C -0.012 4.012 13 H 0.037 0.963 14 C -0.505 4.505 15 H 0.079 0.921 16 C 0.077 3.923 17 N -0.890 5.890 18 Si 0.861 3.139 19 H -0.273 1.273 20 H -0.288 1.288 21 H -0.265 1.265 22 H 0.058 0.942 23 H 0.079 0.921 24 H 0.092 0.908 25 H 0.171 0.829 26 H 0.138 0.862 27 H 0.342 0.658 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.047 0.953 31 H 0.071 0.929 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.561 -3.870 7.683 8.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.127 5.127 3 N -0.135 5.135 4 C -0.146 4.146 5 C -0.321 4.321 6 C 0.023 3.977 7 C 0.018 3.982 8 H 0.098 0.902 9 N -0.285 5.285 10 C -0.090 4.090 11 C -0.194 4.194 12 C -0.033 4.033 13 H 0.055 0.945 14 C -0.543 4.543 15 H 0.097 0.903 16 C -0.126 4.126 17 N -0.526 5.526 18 Si 0.688 3.312 19 H -0.199 1.199 20 H -0.214 1.214 21 H -0.190 1.190 22 H 0.077 0.923 23 H 0.098 0.902 24 H 0.110 0.890 25 H 0.188 0.812 26 H 0.155 0.845 27 H 0.159 0.841 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.373 -2.921 8.241 8.751 hybrid contribution -0.790 -0.692 -1.227 1.615 sum -1.163 -3.613 7.013 7.974 Atomic orbital electron populations 1.21825 0.75490 1.05143 1.01122 1.47933 1.05834 1.02962 1.55929 1.77175 1.01702 1.08521 1.26057 1.23516 0.94979 0.95049 1.01091 1.20892 0.96137 0.94460 1.20582 1.20464 0.90744 0.89692 0.96845 1.21262 0.92385 0.85562 0.99011 0.90214 1.63508 1.10925 1.03634 1.50407 1.22942 0.96865 0.92782 0.96412 1.23251 0.98126 0.98092 0.99940 1.20556 0.95265 0.93628 0.93815 0.94485 1.20875 0.98228 1.24496 1.10656 0.90329 1.25006 0.98130 0.94557 0.94873 1.69888 1.33607 1.34591 1.14560 0.87157 0.86227 0.79879 0.77907 1.19928 1.21411 1.18984 0.92325 0.90183 0.88985 0.81232 0.84459 0.84086 0.91692 0.91466 0.93436 0.91027 0.92609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.03 10.91 59.85 0.65 2.68 16 2 N -0.35 -7.42 3.73 -63.88 -0.24 -7.66 16 3 N -0.31 -6.84 12.58 30.62 0.39 -6.46 16 4 C 0.04 0.76 12.03 -17.37 -0.21 0.55 16 5 C -0.29 -5.75 9.80 -40.01 -0.39 -6.15 16 6 C 0.15 3.15 4.32 -82.26 -0.36 2.80 16 7 C 0.13 2.50 3.33 -67.22 -0.22 2.28 16 8 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 9 N -0.66 -11.54 7.14 -103.95 -0.74 -12.28 16 10 C 0.04 0.65 7.47 -2.18 -0.02 0.63 16 11 C -0.15 -2.95 6.64 -25.35 -0.17 -3.12 16 12 C -0.01 -0.25 1.59 -90.39 -0.14 -0.40 16 13 H 0.04 0.79 4.40 -51.93 -0.23 0.56 16 14 C -0.50 -12.91 6.42 -34.44 -0.22 -13.13 16 15 H 0.08 2.31 7.41 -52.49 -0.39 1.92 16 16 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 17 N -0.89 -26.23 13.96 55.43 0.77 -25.45 16 18 Si 0.86 19.97 25.65 -169.99 -4.36 15.61 16 19 H -0.27 -6.00 7.10 56.52 0.40 -5.60 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.27 -5.88 6.85 56.52 0.39 -5.50 16 22 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 23 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 24 H 0.09 1.82 3.79 -51.93 -0.20 1.63 16 25 H 0.17 2.64 8.06 -52.49 -0.42 2.22 16 26 H 0.14 2.42 7.28 -52.48 -0.38 2.04 16 27 H 0.34 6.20 7.42 -39.29 -0.29 5.90 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.07 1.48 7.70 -51.93 -0.40 1.08 16 32 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 255.29 15.07 3.85 3.85 Total: -1.00 -29.76 255.29 -5.51 -35.27 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -4.00 Total: 9.02 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: -1.17 Total: -11.89 kcal Atomic # 7 Polarization: -52.04 SS G_CDS: 0.18 Total: -51.86 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -4.36 Total: 15.61 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -29.76 -5.51 -35.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260232628.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.925 kcal (2) G-P(sol) polarization free energy of solvation -29.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds