Wall clock time and date at job start Mon Mar 30 2020 02:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.40084 * 126.04111 * 2 1 4 4 C 1.30834 * 108.20685 * 180.23100 * 3 2 1 5 5 C 1.39873 * 108.20179 * 359.78023 * 4 3 2 6 6 C 1.34946 * 126.03362 * 179.84164 * 2 1 3 7 7 C 1.50701 * 126.13023 * 0.03640 * 6 2 1 8 8 H 1.09004 * 110.36603 * 297.83652 * 7 6 2 9 9 N 1.48556 * 110.41286 * 175.35785 * 7 6 2 10 10 C 1.48564 * 104.22192 * 201.73953 * 9 7 6 11 11 C 1.54381 * 104.59509 * 39.48287 * 10 9 7 12 12 C 1.54257 * 105.05747 * 336.14718 * 11 10 9 13 13 H 1.09000 * 110.40997 * 241.05737 * 12 11 10 14 14 C 1.50699 * 110.32134 * 118.89747 * 12 11 10 15 15 H 1.08000 * 120.00307 * 277.74218 * 14 12 11 16 16 C 1.37886 * 119.99940 * 97.74648 * 14 12 11 17 17 N 1.31512 * 119.99535 * 184.00617 * 16 14 12 18 18 Si 1.86798 * 119.99863 * 4.00285 * 16 14 12 19 19 H 1.48492 * 109.46990 * 84.72204 * 18 16 14 20 20 H 1.48500 * 109.46743 * 204.72054 * 18 16 14 21 21 H 1.48495 * 109.47445 * 324.71794 * 18 16 14 22 22 H 1.08995 * 109.47036 * 274.65362 * 1 2 3 23 23 H 1.08995 * 109.46939 * 34.65190 * 1 2 3 24 24 H 1.09002 * 109.47363 * 154.64977 * 1 2 3 25 25 H 1.08001 * 125.89805 * 179.80981 * 4 3 2 26 26 H 1.08005 * 126.04025 * 180.02562 * 5 4 3 27 27 H 1.00899 * 111.00418 * 321.28998 * 9 7 6 28 28 H 1.08998 * 110.41180 * 158.26396 * 10 9 7 29 29 H 1.09004 * 110.41224 * 280.70275 * 10 9 7 30 30 H 1.09000 * 110.32285 * 217.25537 * 11 10 9 31 31 H 1.08996 * 110.32269 * 95.04558 * 11 10 9 32 32 H 0.97005 * 119.99768 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1327 0.0000 4 6 3.5347 0.7320 -0.0050 5 6 3.5437 -0.6667 -0.0033 6 6 2.2589 -1.0913 0.0030 7 6 1.7973 -2.5258 0.0062 8 1 1.2264 -2.7386 0.9101 9 7 2.9596 -3.4444 -0.1037 10 6 2.3777 -4.7090 -0.6225 11 6 1.3300 -4.2572 -1.6625 12 6 0.9482 -2.8210 -1.2489 13 1 -0.1137 -2.7640 -1.0096 14 6 1.2883 -1.8511 -2.3509 15 1 2.2974 -1.4795 -2.4509 16 6 0.3111 -1.4379 -3.2316 17 7 0.6238 -0.6539 -4.2401 18 14 -1.4567 -1.9919 -2.9922 19 1 -2.1332 -1.0861 -2.0295 20 1 -2.1688 -1.9510 -4.2947 21 1 -1.4733 -3.3790 -2.4624 22 1 -0.3633 0.0834 1.0242 23 1 -0.3633 0.8453 -0.5843 24 1 -0.3634 -0.9287 -0.4400 25 1 4.4055 1.3709 -0.0092 26 1 4.4211 -1.2965 -0.0060 27 1 3.6518 -3.0774 -0.7395 28 1 3.1487 -5.3152 -1.0982 29 1 1.8984 -5.2655 0.1829 30 1 0.4556 -4.9069 -1.6258 31 1 1.7635 -4.2606 -2.6626 32 1 -0.0636 -0.3635 -4.8599 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260232628.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:33 Heat of formation + Delta-G solvation = 62.511085 kcal Electronic energy + Delta-G solvation = -15832.665640 eV Core-core repulsion = 13408.034304 eV Total energy + Delta-G solvation = -2424.631336 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.08843 -39.31537 -34.80065 -33.93299 -32.01123 -31.24551 -28.53601 -27.52486 -26.27377 -23.01197 -21.90171 -21.10271 -20.32902 -19.25647 -17.78544 -16.45557 -16.25401 -15.98242 -15.81310 -15.03426 -14.77082 -14.46129 -14.32670 -13.65598 -13.56653 -13.36987 -13.20220 -12.76375 -12.67957 -12.36614 -11.88684 -11.70705 -11.57677 -11.40691 -10.96960 -10.70440 -9.95274 -9.53845 -9.16063 -8.25472 -6.26373 1.21569 1.26243 1.32675 1.40254 1.87722 2.15177 2.31569 3.09263 3.40618 3.78034 3.90440 4.11129 4.35860 4.39893 4.44079 4.49230 4.60199 4.66471 4.75255 4.89997 4.98369 5.05341 5.11088 5.24431 5.41522 5.46134 5.66046 5.91302 5.99417 6.30389 6.36573 6.43905 6.78642 7.01622 7.35548 8.91355 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.022297 B = 0.016275 C = 0.011549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.471864 B = 1720.012745 C = 2423.898016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.360 5.360 3 N -0.347 5.347 4 C 0.036 3.964 5 C -0.300 4.300 6 C 0.135 3.865 7 C 0.136 3.864 8 H 0.101 0.899 9 N -0.650 5.650 10 C 0.047 3.953 11 C -0.153 4.153 12 C -0.017 4.017 13 H 0.043 0.957 14 C -0.480 4.480 15 H 0.030 0.970 16 C 0.019 3.981 17 N -0.949 5.949 18 Si 0.916 3.084 19 H -0.253 1.253 20 H -0.300 1.300 21 H -0.242 1.242 22 H 0.095 0.905 23 H 0.068 0.932 24 H 0.085 0.915 25 H 0.204 0.796 26 H 0.155 0.845 27 H 0.337 0.663 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.064 0.936 31 H 0.047 0.953 32 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.054 -5.618 9.580 11.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.141 5.141 3 N -0.169 5.169 4 C -0.149 4.149 5 C -0.330 4.330 6 C 0.005 3.995 7 C 0.024 3.976 8 H 0.118 0.882 9 N -0.278 5.278 10 C -0.082 4.082 11 C -0.193 4.193 12 C -0.038 4.038 13 H 0.061 0.939 14 C -0.518 4.518 15 H 0.048 0.952 16 C -0.178 4.178 17 N -0.589 5.589 18 Si 0.740 3.260 19 H -0.178 1.178 20 H -0.228 1.228 21 H -0.165 1.165 22 H 0.113 0.887 23 H 0.087 0.913 24 H 0.103 0.897 25 H 0.221 0.779 26 H 0.172 0.828 27 H 0.153 0.847 28 H 0.102 0.898 29 H 0.111 0.889 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.879 -4.694 10.177 11.242 hybrid contribution -0.511 -0.142 -1.816 1.892 sum -1.390 -4.836 8.361 9.758 Atomic orbital electron populations 1.21971 0.74739 1.04215 1.03223 1.48172 1.06591 1.03073 1.56284 1.77119 1.02772 1.09502 1.27535 1.24143 0.95377 0.95699 0.99638 1.21241 0.96640 0.94917 1.20173 1.20876 0.91259 0.90343 0.96983 1.21243 0.92684 0.85100 0.98594 0.88156 1.63555 1.10178 1.03774 1.50266 1.23034 0.96577 0.92322 0.96310 1.23135 0.99717 0.96803 0.99623 1.20578 0.96067 0.93832 0.93322 0.93902 1.20886 0.95699 1.24056 1.11175 0.95180 1.25762 1.02575 0.94871 0.94567 1.70069 1.34880 1.37552 1.16439 0.86248 0.80994 0.81004 0.77736 1.17770 1.22755 1.16531 0.88656 0.91318 0.89674 0.77931 0.82750 0.84680 0.89753 0.88929 0.91734 0.93442 0.93126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.70 10.91 127.77 1.39 5.09 16 2 N -0.36 -15.24 3.73 -356.03 -1.33 -16.56 16 3 N -0.35 -15.12 12.58 -57.02 -0.72 -15.84 16 4 C 0.04 1.38 12.03 85.24 1.03 2.40 16 5 C -0.30 -11.58 9.80 21.99 0.22 -11.37 16 6 C 0.13 5.45 4.32 41.41 0.18 5.63 16 7 C 0.14 4.91 3.33 44.32 0.15 5.06 16 8 H 0.10 3.26 8.14 -2.39 -0.02 3.24 16 9 N -0.65 -21.05 7.14 -482.78 -3.45 -24.50 16 10 C 0.05 1.34 7.47 86.45 0.65 1.99 16 11 C -0.15 -5.44 6.64 31.49 0.21 -5.23 16 12 C -0.02 -0.70 1.59 -10.65 -0.02 -0.71 16 13 H 0.04 1.70 4.40 -2.39 -0.01 1.69 16 14 C -0.48 -24.72 6.42 25.60 0.16 -24.55 16 15 H 0.03 1.82 7.41 -2.91 -0.02 1.80 16 16 C 0.02 1.04 5.47 84.66 0.46 1.50 16 17 N -0.95 -57.97 13.96 21.45 0.30 -57.67 16 18 Si 0.92 40.60 25.65 68.60 1.76 42.36 16 19 H -0.25 -10.30 7.10 99.48 0.71 -9.60 16 20 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 21 H -0.24 -9.73 6.85 99.48 0.68 -9.04 16 22 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 23 H 0.07 2.64 8.14 -2.39 -0.02 2.63 16 24 H 0.08 3.22 3.79 -2.39 -0.01 3.21 16 25 H 0.20 6.01 8.06 -2.91 -0.02 5.99 16 26 H 0.15 5.24 7.28 -2.91 -0.02 5.22 16 27 H 0.34 11.61 7.42 -89.69 -0.67 10.95 16 28 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.09 2.25 8.14 -2.39 -0.02 2.24 16 30 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.05 1.90 7.70 -2.39 -0.02 1.88 16 32 H 0.26 15.16 8.31 -92.70 -0.77 14.39 16 Total: -1.00 -65.54 255.29 1.43 -64.11 By element: Atomic # 1 Polarization: 27.85 SS G_CDS: 0.44 Total: 28.29 kcal Atomic # 6 Polarization: -24.62 SS G_CDS: 4.43 Total: -20.20 kcal Atomic # 7 Polarization: -109.38 SS G_CDS: -5.19 Total: -114.57 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 1.76 Total: 42.36 kcal Total: -65.54 1.43 -64.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260232628.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.623 kcal (2) G-P(sol) polarization free energy of solvation -65.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds